data_5R5W # _model_server_result.job_id ls2K5XLG8Cp-S6DyILp8YQ _model_server_result.datetime_utc '2025-07-31 02:49:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2401}' # _entry.id 5R5W # _exptl.entry_id 5R5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 222.259 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(4-fluorophenyl)-2-pyrrolidin-1-yl-ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R5W _cell.length_a 77.29 _cell.length_b 77.29 _cell.length_c 71.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 1984 1_555 A SG CYS 38 A CYS 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 A SG CYS 160 A CYS 2136 1_555 A SG CYS 173 A CYS 2149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C12 H15 F N2 O' _chem_comp.formula_weight 222.259 _chem_comp.id EJQ _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(4-fluorophenyl)-2-pyrrolidin-1-yl-ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 EJQ sing 83 n n C15 N11 EJQ sing 84 n n C10 C08 EJQ sing 85 n n C10 N11 EJQ sing 86 n n N07 C08 EJQ sing 87 n n N07 C06 EJQ sing 88 n n C14 C13 EJQ sing 89 n n C08 O09 EJQ doub 90 n n C06 C05 EJQ doub 91 n y C06 C01 EJQ sing 92 n y C05 C04 EJQ sing 93 n y N11 C12 EJQ sing 94 n n C01 C02 EJQ doub 95 n y C04 C03 EJQ doub 96 n y C02 C03 EJQ sing 97 n y C03 F16 EJQ sing 98 n n C12 C13 EJQ sing 99 n n C10 H1 EJQ sing 100 n n C10 H2 EJQ sing 101 n n C13 H3 EJQ sing 102 n n C13 H4 EJQ sing 103 n n C15 H5 EJQ sing 104 n n C15 H6 EJQ sing 105 n n C01 H7 EJQ sing 106 n n C02 H8 EJQ sing 107 n n C04 H9 EJQ sing 108 n n C05 H10 EJQ sing 109 n n C12 H11 EJQ sing 110 n n C12 H12 EJQ sing 111 n n C14 H13 EJQ sing 112 n n C14 H14 EJQ sing 113 n n N07 H15 EJQ sing 114 n n # _atom_sites.entry_id 5R5W _atom_sites.fract_transf_matrix[1][1] 0.012938 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EJQ A 1 2401 2401 EJQ LIG . C 3 HOH A 1 2501 2203 HOH HOH . C 3 HOH A 2 2502 2236 HOH HOH . C 3 HOH A 3 2503 2346 HOH HOH . C 3 HOH A 4 2504 2201 HOH HOH . C 3 HOH A 5 2505 2221 HOH HOH . C 3 HOH A 6 2506 2202 HOH HOH . C 3 HOH A 7 2507 2228 HOH HOH . C 3 HOH A 8 2508 2274 HOH HOH . C 3 HOH A 9 2509 2232 HOH HOH . C 3 HOH A 10 2510 2204 HOH HOH . C 3 HOH A 11 2511 2217 HOH HOH . C 3 HOH A 12 2512 2211 HOH HOH . C 3 HOH A 13 2513 2230 HOH HOH . C 3 HOH A 14 2514 2210 HOH HOH . C 3 HOH A 15 2515 2206 HOH HOH . C 3 HOH A 16 2516 2254 HOH HOH . C 3 HOH A 17 2517 2246 HOH HOH . C 3 HOH A 18 2518 2292 HOH HOH . C 3 HOH A 19 2519 2239 HOH HOH . C 3 HOH A 20 2520 2220 HOH HOH . C 3 HOH A 21 2521 2255 HOH HOH . C 3 HOH A 22 2522 2215 HOH HOH . C 3 HOH A 23 2523 2212 HOH HOH . C 3 HOH A 24 2524 2266 HOH HOH . C 3 HOH A 25 2525 2336 HOH HOH . C 3 HOH A 26 2526 2227 HOH HOH . C 3 HOH A 27 2527 2231 HOH HOH . C 3 HOH A 28 2528 2240 HOH HOH . C 3 HOH A 29 2529 2214 HOH HOH . C 3 HOH A 30 2530 2213 HOH HOH . C 3 HOH A 31 2531 2268 HOH HOH . C 3 HOH A 32 2532 2331 HOH HOH . C 3 HOH A 33 2533 2209 HOH HOH . C 3 HOH A 34 2534 2241 HOH HOH . C 3 HOH A 35 2535 2224 HOH HOH . C 3 HOH A 36 2536 2235 HOH HOH . C 3 HOH A 37 2537 2216 HOH HOH . C 3 HOH A 38 2538 2279 HOH HOH . C 3 HOH A 39 2539 2226 HOH HOH . C 3 HOH A 40 2540 2290 HOH HOH . C 3 HOH A 41 2541 2298 HOH HOH . C 3 HOH A 42 2542 2257 HOH HOH . C 3 HOH A 43 2543 2219 HOH HOH . C 3 HOH A 44 2544 2245 HOH HOH . C 3 HOH A 45 2545 2243 HOH HOH . C 3 HOH A 46 2546 2244 HOH HOH . C 3 HOH A 47 2547 2267 HOH HOH . C 3 HOH A 48 2548 2234 HOH HOH . C 3 HOH A 49 2549 2251 HOH HOH . C 3 HOH A 50 2550 2297 HOH HOH . C 3 HOH A 51 2551 2225 HOH HOH . C 3 HOH A 52 2552 2284 HOH HOH . C 3 HOH A 53 2553 2218 HOH HOH . C 3 HOH A 54 2554 2248 HOH HOH . C 3 HOH A 55 2555 2263 HOH HOH . C 3 HOH A 56 2556 2299 HOH HOH . C 3 HOH A 57 2557 2350 HOH HOH . C 3 HOH A 58 2558 2256 HOH HOH . C 3 HOH A 59 2559 2207 HOH HOH . C 3 HOH A 60 2560 2306 HOH HOH . C 3 HOH A 61 2561 2322 HOH HOH . C 3 HOH A 62 2562 2223 HOH HOH . C 3 HOH A 63 2563 2288 HOH HOH . C 3 HOH A 64 2564 2258 HOH HOH . C 3 HOH A 65 2565 2249 HOH HOH . C 3 HOH A 66 2566 2261 HOH HOH . C 3 HOH A 67 2567 2229 HOH HOH . C 3 HOH A 68 2568 2242 HOH HOH . C 3 HOH A 69 2569 2237 HOH HOH . C 3 HOH A 70 2570 2264 HOH HOH . C 3 HOH A 71 2571 2310 HOH HOH . C 3 HOH A 72 2572 2314 HOH HOH . C 3 HOH A 73 2573 2260 HOH HOH . C 3 HOH A 74 2574 2252 HOH HOH . C 3 HOH A 75 2575 2269 HOH HOH . C 3 HOH A 76 2576 2208 HOH HOH . C 3 HOH A 77 2577 2250 HOH HOH . C 3 HOH A 78 2578 2282 HOH HOH . C 3 HOH A 79 2579 2302 HOH HOH . C 3 HOH A 80 2580 2247 HOH HOH . C 3 HOH A 81 2581 2270 HOH HOH . C 3 HOH A 82 2582 2285 HOH HOH . C 3 HOH A 83 2583 2222 HOH HOH . C 3 HOH A 84 2584 2280 HOH HOH . C 3 HOH A 85 2585 2272 HOH HOH . C 3 HOH A 86 2586 2259 HOH HOH . C 3 HOH A 87 2587 2283 HOH HOH . C 3 HOH A 88 2588 2275 HOH HOH . C 3 HOH A 89 2589 2286 HOH HOH . C 3 HOH A 90 2590 2265 HOH HOH . C 3 HOH A 91 2591 2271 HOH HOH . C 3 HOH A 92 2592 2296 HOH HOH . C 3 HOH A 93 2593 2281 HOH HOH . C 3 HOH A 94 2594 2276 HOH HOH . C 3 HOH A 95 2595 2304 HOH HOH . C 3 HOH A 96 2596 2309 HOH HOH . C 3 HOH A 97 2597 2291 HOH HOH . C 3 HOH A 98 2598 2233 HOH HOH . C 3 HOH A 99 2599 2328 HOH HOH . C 3 HOH A 100 2600 2300 HOH HOH . C 3 HOH A 101 2601 2273 HOH HOH . C 3 HOH A 102 2602 2332 HOH HOH . C 3 HOH A 103 2603 2319 HOH HOH . C 3 HOH A 104 2604 2311 HOH HOH . C 3 HOH A 105 2605 2294 HOH HOH . C 3 HOH A 106 2606 2318 HOH HOH . C 3 HOH A 107 2607 2326 HOH HOH . C 3 HOH A 108 2608 2289 HOH HOH . C 3 HOH A 109 2609 2323 HOH HOH . C 3 HOH A 110 2610 2366 HOH HOH . C 3 HOH A 111 2611 2324 HOH HOH . C 3 HOH A 112 2612 2321 HOH HOH . C 3 HOH A 113 2613 2301 HOH HOH . C 3 HOH A 114 2614 2315 HOH HOH . C 3 HOH A 115 2615 2278 HOH HOH . C 3 HOH A 116 2616 2312 HOH HOH . C 3 HOH A 117 2617 2329 HOH HOH . C 3 HOH A 118 2618 2325 HOH HOH . C 3 HOH A 119 2619 2287 HOH HOH . C 3 HOH A 120 2620 2307 HOH HOH . C 3 HOH A 121 2621 2316 HOH HOH . C 3 HOH A 122 2622 2305 HOH HOH . C 3 HOH A 123 2623 2327 HOH HOH . C 3 HOH A 124 2624 2317 HOH HOH . C 3 HOH A 125 2625 2339 HOH HOH . C 3 HOH A 126 2626 2333 HOH HOH . C 3 HOH A 127 2627 2320 HOH HOH . C 3 HOH A 128 2628 2303 HOH HOH . C 3 HOH A 129 2629 2340 HOH HOH . C 3 HOH A 130 2630 2338 HOH HOH . C 3 HOH A 131 2631 2337 HOH HOH . C 3 HOH A 132 2632 2308 HOH HOH . C 3 HOH A 133 2633 2374 HOH HOH . C 3 HOH A 134 2634 2334 HOH HOH . C 3 HOH A 135 2635 2313 HOH HOH . C 3 HOH A 136 2636 2295 HOH HOH . C 3 HOH A 137 2637 2330 HOH HOH . C 3 HOH A 138 2638 2335 HOH HOH . C 3 HOH A 139 2639 2367 HOH HOH . C 3 HOH A 140 2640 2205 HOH HOH . C 3 HOH A 141 2641 2368 HOH HOH . C 3 HOH A 142 2642 2341 HOH HOH . C 3 HOH A 143 2643 2344 HOH HOH . C 3 HOH A 144 2644 2253 HOH HOH . C 3 HOH A 145 2645 2353 HOH HOH . C 3 HOH A 146 2646 2342 HOH HOH . C 3 HOH A 147 2647 2349 HOH HOH . C 3 HOH A 148 2648 2352 HOH HOH . C 3 HOH A 149 2649 2293 HOH HOH . C 3 HOH A 150 2650 2238 HOH HOH . C 3 HOH A 151 2651 2343 HOH HOH . C 3 HOH A 152 2652 2351 HOH HOH . C 3 HOH A 153 2653 2362 HOH HOH . C 3 HOH A 154 2654 2359 HOH HOH . C 3 HOH A 155 2655 2345 HOH HOH . C 3 HOH A 156 2656 2372 HOH HOH . C 3 HOH A 157 2657 2347 HOH HOH . C 3 HOH A 158 2658 2365 HOH HOH . C 3 HOH A 159 2659 2360 HOH HOH . C 3 HOH A 160 2660 2354 HOH HOH . C 3 HOH A 161 2661 2364 HOH HOH . C 3 HOH A 162 2662 2356 HOH HOH . C 3 HOH A 163 2663 2363 HOH HOH . C 3 HOH A 164 2664 2348 HOH HOH . C 3 HOH A 165 2665 2358 HOH HOH . C 3 HOH A 166 2666 2355 HOH HOH . C 3 HOH A 167 2667 2361 HOH HOH . C 3 HOH A 168 2668 2357 HOH HOH . C 3 HOH A 169 2669 2371 HOH HOH . C 3 HOH A 170 2670 2369 HOH HOH . C 3 HOH A 171 2671 2370 HOH HOH . C 3 HOH A 172 2672 2373 HOH HOH . C 3 HOH A 173 2673 2375 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EJQ . . . B 2 12.004 -20.827 -16.837 0.64 47.32 ? C10 EJQ 2401 A 1 HETATM 2 C C13 EJQ . . . B 2 12.398 -18.143 -19.04 0.64 46.01 ? C13 EJQ 2401 A 1 HETATM 3 C C15 EJQ . . . B 2 13.927 -19.657 -17.925 0.64 46.83 ? C15 EJQ 2401 A 1 HETATM 4 C C01 EJQ . . . B 2 11.589 -18.795 -12.656 0.64 20.1 ? C01 EJQ 2401 A 1 HETATM 5 C C02 EJQ . . . B 2 11.418 -17.938 -11.624 0.64 21.06 ? C02 EJQ 2401 A 1 HETATM 6 C C03 EJQ . . . B 2 12.495 -17.174 -11.231 0.64 22.06 ? C03 EJQ 2401 A 1 HETATM 7 C C04 EJQ . . . B 2 13.727 -17.265 -11.851 0.64 19.46 ? C04 EJQ 2401 A 1 HETATM 8 C C05 EJQ . . . B 2 13.886 -18.169 -12.968 0.64 21.86 ? C05 EJQ 2401 A 1 HETATM 9 C C06 EJQ . . . B 2 12.817 -18.92 -13.374 0.64 23.84 ? C06 EJQ 2401 A 1 HETATM 10 C C08 EJQ . . . B 2 11.912 -19.817 -15.623 0.64 46.29 ? C08 EJQ 2401 A 1 HETATM 11 C C12 EJQ . . . B 2 11.711 -19.537 -18.986 0.64 44.83 ? C12 EJQ 2401 A 1 HETATM 12 C C14 EJQ . . . B 2 13.847 -18.305 -18.606 0.64 45.54 ? C14 EJQ 2401 A 1 HETATM 13 F F16 EJQ . . . B 2 12.301 -16.394 -10.228 0.64 26.31 ? F16 EJQ 2401 A 1 HETATM 14 N N07 EJQ . . . B 2 12.88 -19.849 -14.529 0.64 29.68 ? N07 EJQ 2401 A 1 HETATM 15 N N11 EJQ . . . B 2 12.609 -20.33 -18.124 0.64 45.06 ? N11 EJQ 2401 A 1 HETATM 16 O O09 EJQ . . . B 2 10.928 -19.023 -15.631 0.64 52.27 ? O09 EJQ 2401 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #