data_5R5X # _model_server_result.job_id aT8DiEa12fg7mOH5d983bQ _model_server_result.datetime_utc '2024-10-19 16:42:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2401}' # _entry.id 5R5X # _exptl.entry_id 5R5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.354 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{1-[(2-methyl-1,3-thiazol-4-yl)methyl]piperidin-4-yl}methanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R5X _cell.length_a 77.16 _cell.length_b 77.16 _cell.length_c 71.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 1984 1_555 A SG CYS 38 A CYS 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 160 A CYS 2136 1_555 A SG CYS 173 A CYS 2149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'C11 H19 N3 S' _chem_comp.formula_weight 225.354 _chem_comp.id RWV _chem_comp.mon_nstd_flag . _chem_comp.name 1-{1-[(2-methyl-1,3-thiazol-4-yl)methyl]piperidin-4-yl}methanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 RWV sing 277 n n S C1 RWV sing 278 n y S C10 RWV sing 279 n y C1 N RWV doub 280 n y N C2 RWV sing 281 n y C10 C2 RWV doub 282 n y C2 C3 RWV sing 283 n n C3 N1 RWV sing 284 n n C5 C4 RWV sing 285 n n C5 C6 RWV sing 286 n n C4 N1 RWV sing 287 n n N1 C9 RWV sing 288 n n C9 C8 RWV sing 289 n n C6 C7 RWV sing 290 n n C6 C8 RWV sing 291 n n N2 C7 RWV sing 292 n n C4 H2 RWV sing 293 n n C4 H3 RWV sing 294 n n C5 H4 RWV sing 295 n n C5 H5 RWV sing 296 n n C6 H6 RWV sing 297 n n C7 H7 RWV sing 298 n n C7 H8 RWV sing 299 n n C8 H9 RWV sing 300 n n C8 H10 RWV sing 301 n n C10 H11 RWV sing 302 n n C H12 RWV sing 303 n n C H13 RWV sing 304 n n C H14 RWV sing 305 n n C3 H15 RWV sing 306 n n C3 H16 RWV sing 307 n n C9 H17 RWV sing 308 n n C9 H18 RWV sing 309 n n N2 H19 RWV sing 310 n n N2 H20 RWV sing 311 n n # _atom_sites.entry_id 5R5X _atom_sites.fract_transf_matrix[1][1] 0.01296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RWV A 1 2401 2401 RWV LIG . C 3 HOH A 1 2501 2203 HOH HOH . C 3 HOH A 2 2502 2228 HOH HOH . C 3 HOH A 3 2503 2355 HOH HOH . C 3 HOH A 4 2504 2201 HOH HOH . C 3 HOH A 5 2505 2366 HOH HOH . C 3 HOH A 6 2506 2202 HOH HOH . C 3 HOH A 7 2507 2204 HOH HOH . C 3 HOH A 8 2508 2221 HOH HOH . C 3 HOH A 9 2509 2348 HOH HOH . C 3 HOH A 10 2510 2230 HOH HOH . C 3 HOH A 11 2511 2235 HOH HOH . C 3 HOH A 12 2512 2232 HOH HOH . C 3 HOH A 13 2513 2211 HOH HOH . C 3 HOH A 14 2514 2217 HOH HOH . C 3 HOH A 15 2515 2206 HOH HOH . C 3 HOH A 16 2516 2210 HOH HOH . C 3 HOH A 17 2517 2227 HOH HOH . C 3 HOH A 18 2518 2254 HOH HOH . C 3 HOH A 19 2519 2350 HOH HOH . C 3 HOH A 20 2520 2209 HOH HOH . C 3 HOH A 21 2521 2208 HOH HOH . C 3 HOH A 22 2522 2212 HOH HOH . C 3 HOH A 23 2523 2215 HOH HOH . C 3 HOH A 24 2524 2223 HOH HOH . C 3 HOH A 25 2525 2205 HOH HOH . C 3 HOH A 26 2526 2239 HOH HOH . C 3 HOH A 27 2527 2214 HOH HOH . C 3 HOH A 28 2528 2299 HOH HOH . C 3 HOH A 29 2529 2249 HOH HOH . C 3 HOH A 30 2530 2255 HOH HOH . C 3 HOH A 31 2531 2256 HOH HOH . C 3 HOH A 32 2532 2245 HOH HOH . C 3 HOH A 33 2533 2331 HOH HOH . C 3 HOH A 34 2534 2322 HOH HOH . C 3 HOH A 35 2535 2234 HOH HOH . C 3 HOH A 36 2536 2279 HOH HOH . C 3 HOH A 37 2537 2241 HOH HOH . C 3 HOH A 38 2538 2220 HOH HOH . C 3 HOH A 39 2539 2216 HOH HOH . C 3 HOH A 40 2540 2266 HOH HOH . C 3 HOH A 41 2541 2246 HOH HOH . C 3 HOH A 42 2542 2240 HOH HOH . C 3 HOH A 43 2543 2231 HOH HOH . C 3 HOH A 44 2544 2268 HOH HOH . C 3 HOH A 45 2545 2225 HOH HOH . C 3 HOH A 46 2546 2251 HOH HOH . C 3 HOH A 47 2547 2236 HOH HOH . C 3 HOH A 48 2548 2252 HOH HOH . C 3 HOH A 49 2549 2244 HOH HOH . C 3 HOH A 50 2550 2272 HOH HOH . C 3 HOH A 51 2551 2288 HOH HOH . C 3 HOH A 52 2552 2218 HOH HOH . C 3 HOH A 53 2553 2242 HOH HOH . C 3 HOH A 54 2554 2263 HOH HOH . C 3 HOH A 55 2555 2284 HOH HOH . C 3 HOH A 56 2556 2243 HOH HOH . C 3 HOH A 57 2557 2248 HOH HOH . C 3 HOH A 58 2558 2310 HOH HOH . C 3 HOH A 59 2559 2257 HOH HOH . C 3 HOH A 60 2560 2237 HOH HOH . C 3 HOH A 61 2561 2270 HOH HOH . C 3 HOH A 62 2562 2213 HOH HOH . C 3 HOH A 63 2563 2222 HOH HOH . C 3 HOH A 64 2564 2297 HOH HOH . C 3 HOH A 65 2565 2226 HOH HOH . C 3 HOH A 66 2566 2233 HOH HOH . C 3 HOH A 67 2567 2292 HOH HOH . C 3 HOH A 68 2568 2229 HOH HOH . C 3 HOH A 69 2569 2224 HOH HOH . C 3 HOH A 70 2570 2285 HOH HOH . C 3 HOH A 71 2571 2261 HOH HOH . C 3 HOH A 72 2572 2267 HOH HOH . C 3 HOH A 73 2573 2271 HOH HOH . C 3 HOH A 74 2574 2258 HOH HOH . C 3 HOH A 75 2575 2250 HOH HOH . C 3 HOH A 76 2576 2264 HOH HOH . C 3 HOH A 77 2577 2265 HOH HOH . C 3 HOH A 78 2578 2306 HOH HOH . C 3 HOH A 79 2579 2274 HOH HOH . C 3 HOH A 80 2580 2276 HOH HOH . C 3 HOH A 81 2581 2280 HOH HOH . C 3 HOH A 82 2582 2247 HOH HOH . C 3 HOH A 83 2583 2302 HOH HOH . C 3 HOH A 84 2584 2328 HOH HOH . C 3 HOH A 85 2585 2298 HOH HOH . C 3 HOH A 86 2586 2207 HOH HOH . C 3 HOH A 87 2587 2260 HOH HOH . C 3 HOH A 88 2588 2286 HOH HOH . C 3 HOH A 89 2589 2314 HOH HOH . C 3 HOH A 90 2590 2296 HOH HOH . C 3 HOH A 91 2591 2332 HOH HOH . C 3 HOH A 92 2592 2259 HOH HOH . C 3 HOH A 93 2593 2275 HOH HOH . C 3 HOH A 94 2594 2273 HOH HOH . C 3 HOH A 95 2595 2282 HOH HOH . C 3 HOH A 96 2596 2253 HOH HOH . C 3 HOH A 97 2597 2291 HOH HOH . C 3 HOH A 98 2598 2304 HOH HOH . C 3 HOH A 99 2599 2321 HOH HOH . C 3 HOH A 100 2600 2303 HOH HOH . C 3 HOH A 101 2601 2315 HOH HOH . C 3 HOH A 102 2602 2283 HOH HOH . C 3 HOH A 103 2603 2269 HOH HOH . C 3 HOH A 104 2604 2318 HOH HOH . C 3 HOH A 105 2605 2287 HOH HOH . C 3 HOH A 106 2606 2308 HOH HOH . C 3 HOH A 107 2607 2346 HOH HOH . C 3 HOH A 108 2608 2319 HOH HOH . C 3 HOH A 109 2609 2300 HOH HOH . C 3 HOH A 110 2610 2340 HOH HOH . C 3 HOH A 111 2611 2323 HOH HOH . C 3 HOH A 112 2612 2294 HOH HOH . C 3 HOH A 113 2613 2289 HOH HOH . C 3 HOH A 114 2614 2309 HOH HOH . C 3 HOH A 115 2615 2326 HOH HOH . C 3 HOH A 116 2616 2316 HOH HOH . C 3 HOH A 117 2617 2281 HOH HOH . C 3 HOH A 118 2618 2317 HOH HOH . C 3 HOH A 119 2619 2301 HOH HOH . C 3 HOH A 120 2620 2312 HOH HOH . C 3 HOH A 121 2621 2307 HOH HOH . C 3 HOH A 122 2622 2324 HOH HOH . C 3 HOH A 123 2623 2325 HOH HOH . C 3 HOH A 124 2624 2337 HOH HOH . C 3 HOH A 125 2625 2311 HOH HOH . C 3 HOH A 126 2626 2334 HOH HOH . C 3 HOH A 127 2627 2335 HOH HOH . C 3 HOH A 128 2628 2327 HOH HOH . C 3 HOH A 129 2629 2330 HOH HOH . C 3 HOH A 130 2630 2305 HOH HOH . C 3 HOH A 131 2631 2320 HOH HOH . C 3 HOH A 132 2632 2339 HOH HOH . C 3 HOH A 133 2633 2338 HOH HOH . C 3 HOH A 134 2634 2333 HOH HOH . C 3 HOH A 135 2635 2329 HOH HOH . C 3 HOH A 136 2636 2336 HOH HOH . C 3 HOH A 137 2637 2278 HOH HOH . C 3 HOH A 138 2638 2293 HOH HOH . C 3 HOH A 139 2639 2313 HOH HOH . C 3 HOH A 140 2640 2344 HOH HOH . C 3 HOH A 141 2641 2295 HOH HOH . C 3 HOH A 142 2642 2352 HOH HOH . C 3 HOH A 143 2643 2341 HOH HOH . C 3 HOH A 144 2644 2353 HOH HOH . C 3 HOH A 145 2645 2345 HOH HOH . C 3 HOH A 146 2646 2342 HOH HOH . C 3 HOH A 147 2647 2368 HOH HOH . C 3 HOH A 148 2648 2362 HOH HOH . C 3 HOH A 149 2649 2365 HOH HOH . C 3 HOH A 150 2650 2349 HOH HOH . C 3 HOH A 151 2651 2372 HOH HOH . C 3 HOH A 152 2652 2347 HOH HOH . C 3 HOH A 153 2653 2343 HOH HOH . C 3 HOH A 154 2654 2238 HOH HOH . C 3 HOH A 155 2655 2370 HOH HOH . C 3 HOH A 156 2656 2360 HOH HOH . C 3 HOH A 157 2657 2363 HOH HOH . C 3 HOH A 158 2658 2359 HOH HOH . C 3 HOH A 159 2659 2351 HOH HOH . C 3 HOH A 160 2660 2364 HOH HOH . C 3 HOH A 161 2661 2361 HOH HOH . C 3 HOH A 162 2662 2358 HOH HOH . C 3 HOH A 163 2663 2356 HOH HOH . C 3 HOH A 164 2664 2354 HOH HOH . C 3 HOH A 165 2665 2290 HOH HOH . C 3 HOH A 166 2666 2357 HOH HOH . C 3 HOH A 167 2667 2367 HOH HOH . C 3 HOH A 168 2668 2371 HOH HOH . C 3 HOH A 169 2669 2374 HOH HOH . C 3 HOH A 170 2670 2369 HOH HOH . C 3 HOH A 171 2671 2373 HOH HOH . C 3 HOH A 172 2672 2375 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RWV . . . B 2 12.46 -19.317 -13.406 0.51 42.62 ? N1 RWV 2401 A 1 HETATM 2 C C4 RWV . . . B 2 13.748 -18.625 -13.693 0.51 42.92 ? C4 RWV 2401 A 1 HETATM 3 C C5 RWV . . . B 2 13.346 -17.211 -13.743 0.51 44.81 ? C5 RWV 2401 A 1 HETATM 4 C C6 RWV . . . B 2 13.091 -16.806 -12.266 0.51 39.68 ? C6 RWV 2401 A 1 HETATM 5 C C7 RWV . . . B 2 14.499 -16.849 -11.604 0.51 43.73 ? C7 RWV 2401 A 1 HETATM 6 C C8 RWV . . . B 2 12.015 -17.663 -11.561 0.51 39.12 ? C8 RWV 2401 A 1 HETATM 7 C C10 RWV . . . B 2 13.324 -19.154 -16.517 0.51 43.28 ? C10 RWV 2401 A 1 HETATM 8 N N RWV . . . B 2 11.361 -20.386 -16.997 0.51 44.2 ? N RWV 2401 A 1 HETATM 9 C C RWV . . . B 2 11.133 -20.375 -19.444 0.51 45.75 ? C RWV 2401 A 1 HETATM 10 C C1 RWV . . . B 2 11.791 -20.063 -18.199 0.51 42.56 ? C1 RWV 2401 A 1 HETATM 11 C C2 RWV . . . B 2 12.257 -19.85 -15.984 0.51 42.45 ? C2 RWV 2401 A 1 HETATM 12 C C3 RWV . . . B 2 11.959 -20.144 -14.538 0.51 40.17 ? C3 RWV 2401 A 1 HETATM 13 C C9 RWV . . . B 2 11.35 -18.493 -12.669 0.51 40.38 ? C9 RWV 2401 A 1 HETATM 14 N N2 RWV . . . B 2 15.453 -15.924 -12.253 0.51 43 ? N2 RWV 2401 A 1 HETATM 15 S S RWV . . . B 2 13.252 -19.137 -18.201 0.51 48.61 ? S RWV 2401 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #