data_5R5Y # _model_server_result.job_id qftLFTSHX97EY37CpTB2yQ _model_server_result.datetime_utc '2024-11-16 06:59:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2401}' # _entry.id 5R5Y # _exptl.entry_id 5R5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 245.277 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(4-cyanophenyl)methyl]morpholine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R5Y _cell.length_a 77.22 _cell.length_b 77.22 _cell.length_c 71.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 1984 1_555 A SG CYS 38 A CYS 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 160 A CYS 2136 1_555 A SG CYS 173 A CYS 2149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C13 H15 N3 O2' _chem_comp.formula_weight 245.277 _chem_comp.id JGG _chem_comp.mon_nstd_flag . _chem_comp.name N-[(4-cyanophenyl)methyl]morpholine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 C13 JGG sing 173 n n O14 C15 JGG sing 174 n n C13 C12 JGG sing 175 n n C15 C16 JGG sing 176 n n N18 C17 JGG trip 177 n n C17 C03 JGG sing 178 n n C02 C03 JGG doub 179 n y C02 C01 JGG sing 180 n y C16 N11 JGG sing 181 n n C12 N11 JGG sing 182 n n C03 C04 JGG sing 183 n y C01 C06 JGG doub 184 n y N11 C09 JGG sing 185 n n C09 O10 JGG doub 186 n n C09 N08 JGG sing 187 n n C04 C05 JGG doub 188 n y C06 C05 JGG sing 189 n y C06 C07 JGG sing 190 n n N08 C07 JGG sing 191 n n C13 H132 JGG sing 192 n n C13 H131 JGG sing 193 n n C15 H151 JGG sing 194 n n C15 H152 JGG sing 195 n n C01 H011 JGG sing 196 n n C02 H021 JGG sing 197 n n C04 H041 JGG sing 198 n n C05 H051 JGG sing 199 n n C07 H071 JGG sing 200 n n C07 H072 JGG sing 201 n n N08 H081 JGG sing 202 n n C12 H121 JGG sing 203 n n C12 H122 JGG sing 204 n n C16 H162 JGG sing 205 n n C16 H161 JGG sing 206 n n # _atom_sites.entry_id 5R5Y _atom_sites.fract_transf_matrix[1][1] 0.01295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JGG A 1 2401 2401 JGG LIG . C 3 HOH A 1 2501 2203 HOH HOH . C 3 HOH A 2 2502 2202 HOH HOH . C 3 HOH A 3 2503 2201 HOH HOH . C 3 HOH A 4 2504 2366 HOH HOH . C 3 HOH A 5 2505 2221 HOH HOH . C 3 HOH A 6 2506 2232 HOH HOH . C 3 HOH A 7 2507 2210 HOH HOH . C 3 HOH A 8 2508 2236 HOH HOH . C 3 HOH A 9 2509 2254 HOH HOH . C 3 HOH A 10 2510 2204 HOH HOH . C 3 HOH A 11 2511 2238 HOH HOH . C 3 HOH A 12 2512 2211 HOH HOH . C 3 HOH A 13 2513 2222 HOH HOH . C 3 HOH A 14 2514 2235 HOH HOH . C 3 HOH A 15 2515 2274 HOH HOH . C 3 HOH A 16 2516 2217 HOH HOH . C 3 HOH A 17 2517 2220 HOH HOH . C 3 HOH A 18 2518 2223 HOH HOH . C 3 HOH A 19 2519 2245 HOH HOH . C 3 HOH A 20 2520 2206 HOH HOH . C 3 HOH A 21 2521 2219 HOH HOH . C 3 HOH A 22 2522 2228 HOH HOH . C 3 HOH A 23 2523 2268 HOH HOH . C 3 HOH A 24 2524 2231 HOH HOH . C 3 HOH A 25 2525 2209 HOH HOH . C 3 HOH A 26 2526 2227 HOH HOH . C 3 HOH A 27 2527 2214 HOH HOH . C 3 HOH A 28 2528 2215 HOH HOH . C 3 HOH A 29 2529 2297 HOH HOH . C 3 HOH A 30 2530 2234 HOH HOH . C 3 HOH A 31 2531 2212 HOH HOH . C 3 HOH A 32 2532 2213 HOH HOH . C 3 HOH A 33 2533 2229 HOH HOH . C 3 HOH A 34 2534 2255 HOH HOH . C 3 HOH A 35 2535 2224 HOH HOH . C 3 HOH A 36 2536 2252 HOH HOH . C 3 HOH A 37 2537 2242 HOH HOH . C 3 HOH A 38 2538 2290 HOH HOH . C 3 HOH A 39 2539 2251 HOH HOH . C 3 HOH A 40 2540 2226 HOH HOH . C 3 HOH A 41 2541 2267 HOH HOH . C 3 HOH A 42 2542 2257 HOH HOH . C 3 HOH A 43 2543 2263 HOH HOH . C 3 HOH A 44 2544 2218 HOH HOH . C 3 HOH A 45 2545 2256 HOH HOH . C 3 HOH A 46 2546 2279 HOH HOH . C 3 HOH A 47 2547 2248 HOH HOH . C 3 HOH A 48 2548 2237 HOH HOH . C 3 HOH A 49 2549 2244 HOH HOH . C 3 HOH A 50 2550 2299 HOH HOH . C 3 HOH A 51 2551 2225 HOH HOH . C 3 HOH A 52 2552 2243 HOH HOH . C 3 HOH A 53 2553 2240 HOH HOH . C 3 HOH A 54 2554 2216 HOH HOH . C 3 HOH A 55 2555 2310 HOH HOH . C 3 HOH A 56 2556 2322 HOH HOH . C 3 HOH A 57 2557 2284 HOH HOH . C 3 HOH A 58 2558 2280 HOH HOH . C 3 HOH A 59 2559 2205 HOH HOH . C 3 HOH A 60 2560 2291 HOH HOH . C 3 HOH A 61 2561 2239 HOH HOH . C 3 HOH A 62 2562 2292 HOH HOH . C 3 HOH A 63 2563 2285 HOH HOH . C 3 HOH A 64 2564 2230 HOH HOH . C 3 HOH A 65 2565 2269 HOH HOH . C 3 HOH A 66 2566 2249 HOH HOH . C 3 HOH A 67 2567 2266 HOH HOH . C 3 HOH A 68 2568 2241 HOH HOH . C 3 HOH A 69 2569 2276 HOH HOH . C 3 HOH A 70 2570 2208 HOH HOH . C 3 HOH A 71 2571 2340 HOH HOH . C 3 HOH A 72 2572 2250 HOH HOH . C 3 HOH A 73 2573 2264 HOH HOH . C 3 HOH A 74 2574 2306 HOH HOH . C 3 HOH A 75 2575 2288 HOH HOH . C 3 HOH A 76 2576 2247 HOH HOH . C 3 HOH A 77 2577 2258 HOH HOH . C 3 HOH A 78 2578 2275 HOH HOH . C 3 HOH A 79 2579 2265 HOH HOH . C 3 HOH A 80 2580 2261 HOH HOH . C 3 HOH A 81 2581 2207 HOH HOH . C 3 HOH A 82 2582 2298 HOH HOH . C 3 HOH A 83 2583 2270 HOH HOH . C 3 HOH A 84 2584 2271 HOH HOH . C 3 HOH A 85 2585 2286 HOH HOH . C 3 HOH A 86 2586 2260 HOH HOH . C 3 HOH A 87 2587 2332 HOH HOH . C 3 HOH A 88 2588 2281 HOH HOH . C 3 HOH A 89 2589 2346 HOH HOH . C 3 HOH A 90 2590 2331 HOH HOH . C 3 HOH A 91 2591 2283 HOH HOH . C 3 HOH A 92 2592 2302 HOH HOH . C 3 HOH A 93 2593 2282 HOH HOH . C 3 HOH A 94 2594 2296 HOH HOH . C 3 HOH A 95 2595 2273 HOH HOH . C 3 HOH A 96 2596 2259 HOH HOH . C 3 HOH A 97 2597 2233 HOH HOH . C 3 HOH A 98 2598 2334 HOH HOH . C 3 HOH A 99 2599 2246 HOH HOH . C 3 HOH A 100 2600 2314 HOH HOH . C 3 HOH A 101 2601 2318 HOH HOH . C 3 HOH A 102 2602 2328 HOH HOH . C 3 HOH A 103 2603 2300 HOH HOH . C 3 HOH A 104 2604 2289 HOH HOH . C 3 HOH A 105 2605 2287 HOH HOH . C 3 HOH A 106 2606 2278 HOH HOH . C 3 HOH A 107 2607 2315 HOH HOH . C 3 HOH A 108 2608 2304 HOH HOH . C 3 HOH A 109 2609 2253 HOH HOH . C 3 HOH A 110 2610 2323 HOH HOH . C 3 HOH A 111 2611 2326 HOH HOH . C 3 HOH A 112 2612 2316 HOH HOH . C 3 HOH A 113 2613 2312 HOH HOH . C 3 HOH A 114 2614 2309 HOH HOH . C 3 HOH A 115 2615 2325 HOH HOH . C 3 HOH A 116 2616 2303 HOH HOH . C 3 HOH A 117 2617 2311 HOH HOH . C 3 HOH A 118 2618 2294 HOH HOH . C 3 HOH A 119 2619 2301 HOH HOH . C 3 HOH A 120 2620 2319 HOH HOH . C 3 HOH A 121 2621 2324 HOH HOH . C 3 HOH A 122 2622 2307 HOH HOH . C 3 HOH A 123 2623 2368 HOH HOH . C 3 HOH A 124 2624 2321 HOH HOH . C 3 HOH A 125 2625 2337 HOH HOH . C 3 HOH A 126 2626 2317 HOH HOH . C 3 HOH A 127 2627 2293 HOH HOH . C 3 HOH A 128 2628 2339 HOH HOH . C 3 HOH A 129 2629 2305 HOH HOH . C 3 HOH A 130 2630 2308 HOH HOH . C 3 HOH A 131 2631 2335 HOH HOH . C 3 HOH A 132 2632 2313 HOH HOH . C 3 HOH A 133 2633 2329 HOH HOH . C 3 HOH A 134 2634 2320 HOH HOH . C 3 HOH A 135 2635 2327 HOH HOH . C 3 HOH A 136 2636 2338 HOH HOH . C 3 HOH A 137 2637 2348 HOH HOH . C 3 HOH A 138 2638 2295 HOH HOH . C 3 HOH A 139 2639 2333 HOH HOH . C 3 HOH A 140 2640 2330 HOH HOH . C 3 HOH A 141 2641 2272 HOH HOH . C 3 HOH A 142 2642 2345 HOH HOH . C 3 HOH A 143 2643 2336 HOH HOH . C 3 HOH A 144 2644 2344 HOH HOH . C 3 HOH A 145 2645 2350 HOH HOH . C 3 HOH A 146 2646 2352 HOH HOH . C 3 HOH A 147 2647 2341 HOH HOH . C 3 HOH A 148 2648 2342 HOH HOH . C 3 HOH A 149 2649 2343 HOH HOH . C 3 HOH A 150 2650 2349 HOH HOH . C 3 HOH A 151 2651 2353 HOH HOH . C 3 HOH A 152 2652 2347 HOH HOH . C 3 HOH A 153 2653 2355 HOH HOH . C 3 HOH A 154 2654 2359 HOH HOH . C 3 HOH A 155 2655 2365 HOH HOH . C 3 HOH A 156 2656 2361 HOH HOH . C 3 HOH A 157 2657 2362 HOH HOH . C 3 HOH A 158 2658 2360 HOH HOH . C 3 HOH A 159 2659 2351 HOH HOH . C 3 HOH A 160 2660 2372 HOH HOH . C 3 HOH A 161 2661 2354 HOH HOH . C 3 HOH A 162 2662 2358 HOH HOH . C 3 HOH A 163 2663 2364 HOH HOH . C 3 HOH A 164 2664 2356 HOH HOH . C 3 HOH A 165 2665 2363 HOH HOH . C 3 HOH A 166 2666 2370 HOH HOH . C 3 HOH A 167 2667 2367 HOH HOH . C 3 HOH A 168 2668 2374 HOH HOH . C 3 HOH A 169 2669 2357 HOH HOH . C 3 HOH A 170 2670 2369 HOH HOH . C 3 HOH A 171 2671 2371 HOH HOH . C 3 HOH A 172 2672 2373 HOH HOH . C 3 HOH A 173 2673 2375 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 JGG . . . B 2 14.189 -19.516 -18.475 0.45 47.98 ? C13 JGG 2401 A 1 HETATM 2 C C15 JGG . . . B 2 15.449 -17.507 -18.168 0.45 48.29 ? C15 JGG 2401 A 1 HETATM 3 C C17 JGG . . . B 2 12.416 -15.672 -10.199 0.45 30.98 ? C17 JGG 2401 A 1 HETATM 4 C C01 JGG . . . B 2 11.187 -18.447 -12.276 0.45 27.04 ? C01 JGG 2401 A 1 HETATM 5 C C02 JGG . . . B 2 11.257 -17.519 -11.231 0.45 27.13 ? C02 JGG 2401 A 1 HETATM 6 C C03 JGG . . . B 2 12.446 -16.829 -11.005 0.45 28.02 ? C03 JGG 2401 A 1 HETATM 7 C C04 JGG . . . B 2 13.612 -17.128 -11.7 0.45 27.8 ? C04 JGG 2401 A 1 HETATM 8 C C05 JGG . . . B 2 13.533 -18.065 -12.743 0.45 28.87 ? C05 JGG 2401 A 1 HETATM 9 C C06 JGG . . . B 2 12.309 -18.719 -13.041 0.45 30.37 ? C06 JGG 2401 A 1 HETATM 10 C C07 JGG . . . B 2 12.244 -19.691 -14.207 0.45 30.19 ? C07 JGG 2401 A 1 HETATM 11 N N08 JGG . . . B 2 13.583 -19.85 -14.737 0.45 35.28 ? N08 JGG 2401 A 1 HETATM 12 C C09 JGG . . . B 2 14.068 -18.928 -15.631 0.45 38.21 ? C09 JGG 2401 A 1 HETATM 13 O O10 JGG . . . B 2 13.463 -17.869 -15.869 0.45 35.14 ? O10 JGG 2401 A 1 HETATM 14 N N11 JGG . . . B 2 15.273 -19.217 -16.311 0.45 41.61 ? N11 JGG 2401 A 1 HETATM 15 C C12 JGG . . . B 2 15.085 -20.183 -17.403 0.45 47.4 ? C12 JGG 2401 A 1 HETATM 16 O O14 JGG . . . B 2 14.926 -18.471 -19.077 0.45 49.82 ? O14 JGG 2401 A 1 HETATM 17 C C16 JGG . . . B 2 16.049 -18.114 -16.839 0.45 44.11 ? C16 JGG 2401 A 1 HETATM 18 N N18 JGG . . . B 2 12.359 -14.714 -9.552 0.45 32.25 ? N18 JGG 2401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #