data_5R5Z # _model_server_result.job_id X7f6fh4U8FG21edjxYVi-A _model_server_result.datetime_utc '2024-11-22 22:02:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2401}' # _entry.id 5R5Z # _exptl.entry_id 5R5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.313 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-2-{[(3-methylthiophen-2-yl)methyl]amino}propan-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R5Z _cell.length_a 77.1 _cell.length_b 77.1 _cell.length_c 71.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 1984 1_555 A SG CYS 38 A CYS 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 160 A CYS 2136 1_555 A SG CYS 173 A CYS 2149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C10 H17 N O S' _chem_comp.formula_weight 199.313 _chem_comp.id RX7 _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-2-{[(3-methylthiophen-2-yl)methyl]amino}propan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C9 RX7 sing 277 n n C9 C6 RX7 sing 278 n n C8 C6 RX7 sing 279 n n C6 N RX7 sing 280 n n C6 C7 RX7 sing 281 n n S C3 RX7 sing 282 n y S C4 RX7 sing 283 n y N C5 RX7 sing 284 n n C3 C2 RX7 doub 285 n y C5 C4 RX7 sing 286 n n C4 C1 RX7 doub 287 n y C2 C1 RX7 sing 288 n y C1 C RX7 sing 289 n n C5 H1 RX7 sing 290 n n C5 H2 RX7 sing 291 n n C7 H3 RX7 sing 292 n n C7 H4 RX7 sing 293 n n C7 H5 RX7 sing 294 n n C8 H6 RX7 sing 295 n n C8 H7 RX7 sing 296 n n C8 H8 RX7 sing 297 n n N H9 RX7 sing 298 n n C H11 RX7 sing 299 n n C H12 RX7 sing 300 n n C H13 RX7 sing 301 n n O H14 RX7 sing 302 n n C2 H15 RX7 sing 303 n n C3 H16 RX7 sing 304 n n C9 H17 RX7 sing 305 n n C9 H18 RX7 sing 306 n n # _atom_sites.entry_id 5R5Z _atom_sites.fract_transf_matrix[1][1] 0.01297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RX7 A 1 2401 2401 RX7 LIG . C 3 HOH A 1 2501 2201 HOH HOH . C 3 HOH A 2 2502 2202 HOH HOH . C 3 HOH A 3 2503 2210 HOH HOH . C 3 HOH A 4 2504 2208 HOH HOH . C 3 HOH A 5 2505 2221 HOH HOH . C 3 HOH A 6 2506 2204 HOH HOH . C 3 HOH A 7 2507 2211 HOH HOH . C 3 HOH A 8 2508 2232 HOH HOH . C 3 HOH A 9 2509 2356 HOH HOH . C 3 HOH A 10 2510 2262 HOH HOH . C 3 HOH A 11 2511 2203 HOH HOH . C 3 HOH A 12 2512 2350 HOH HOH . C 3 HOH A 13 2513 2249 HOH HOH . C 3 HOH A 14 2514 2236 HOH HOH . C 3 HOH A 15 2515 2223 HOH HOH . C 3 HOH A 16 2516 2217 HOH HOH . C 3 HOH A 17 2517 2222 HOH HOH . C 3 HOH A 18 2518 2224 HOH HOH . C 3 HOH A 19 2519 2254 HOH HOH . C 3 HOH A 20 2520 2215 HOH HOH . C 3 HOH A 21 2521 2206 HOH HOH . C 3 HOH A 22 2522 2246 HOH HOH . C 3 HOH A 23 2523 2234 HOH HOH . C 3 HOH A 24 2524 2255 HOH HOH . C 3 HOH A 25 2525 2299 HOH HOH . C 3 HOH A 26 2526 2274 HOH HOH . C 3 HOH A 27 2527 2218 HOH HOH . C 3 HOH A 28 2528 2225 HOH HOH . C 3 HOH A 29 2529 2209 HOH HOH . C 3 HOH A 30 2530 2263 HOH HOH . C 3 HOH A 31 2531 2205 HOH HOH . C 3 HOH A 32 2532 2229 HOH HOH . C 3 HOH A 33 2533 2288 HOH HOH . C 3 HOH A 34 2534 2219 HOH HOH . C 3 HOH A 35 2535 2284 HOH HOH . C 3 HOH A 36 2536 2245 HOH HOH . C 3 HOH A 37 2537 2251 HOH HOH . C 3 HOH A 38 2538 2257 HOH HOH . C 3 HOH A 39 2539 2266 HOH HOH . C 3 HOH A 40 2540 2227 HOH HOH . C 3 HOH A 41 2541 2271 HOH HOH . C 3 HOH A 42 2542 2231 HOH HOH . C 3 HOH A 43 2543 2279 HOH HOH . C 3 HOH A 44 2544 2264 HOH HOH . C 3 HOH A 45 2545 2252 HOH HOH . C 3 HOH A 46 2546 2276 HOH HOH . C 3 HOH A 47 2547 2230 HOH HOH . C 3 HOH A 48 2548 2214 HOH HOH . C 3 HOH A 49 2549 2216 HOH HOH . C 3 HOH A 50 2550 2212 HOH HOH . C 3 HOH A 51 2551 2226 HOH HOH . C 3 HOH A 52 2552 2243 HOH HOH . C 3 HOH A 53 2553 2240 HOH HOH . C 3 HOH A 54 2554 2275 HOH HOH . C 3 HOH A 55 2555 2310 HOH HOH . C 3 HOH A 56 2556 2220 HOH HOH . C 3 HOH A 57 2557 2242 HOH HOH . C 3 HOH A 58 2558 2250 HOH HOH . C 3 HOH A 59 2559 2285 HOH HOH . C 3 HOH A 60 2560 2322 HOH HOH . C 3 HOH A 61 2561 2237 HOH HOH . C 3 HOH A 62 2562 2298 HOH HOH . C 3 HOH A 63 2563 2268 HOH HOH . C 3 HOH A 64 2564 2248 HOH HOH . C 3 HOH A 65 2565 2259 HOH HOH . C 3 HOH A 66 2566 2239 HOH HOH . C 3 HOH A 67 2567 2244 HOH HOH . C 3 HOH A 68 2568 2241 HOH HOH . C 3 HOH A 69 2569 2256 HOH HOH . C 3 HOH A 70 2570 2258 HOH HOH . C 3 HOH A 71 2571 2280 HOH HOH . C 3 HOH A 72 2572 2290 HOH HOH . C 3 HOH A 73 2573 2283 HOH HOH . C 3 HOH A 74 2574 2247 HOH HOH . C 3 HOH A 75 2575 2233 HOH HOH . C 3 HOH A 76 2576 2292 HOH HOH . C 3 HOH A 77 2577 2269 HOH HOH . C 3 HOH A 78 2578 2260 HOH HOH . C 3 HOH A 79 2579 2300 HOH HOH . C 3 HOH A 80 2580 2291 HOH HOH . C 3 HOH A 81 2581 2296 HOH HOH . C 3 HOH A 82 2582 2267 HOH HOH . C 3 HOH A 83 2583 2235 HOH HOH . C 3 HOH A 84 2584 2261 HOH HOH . C 3 HOH A 85 2585 2306 HOH HOH . C 3 HOH A 86 2586 2270 HOH HOH . C 3 HOH A 87 2587 2207 HOH HOH . C 3 HOH A 88 2588 2265 HOH HOH . C 3 HOH A 89 2589 2273 HOH HOH . C 3 HOH A 90 2590 2314 HOH HOH . C 3 HOH A 91 2591 2302 HOH HOH . C 3 HOH A 92 2592 2297 HOH HOH . C 3 HOH A 93 2593 2309 HOH HOH . C 3 HOH A 94 2594 2328 HOH HOH . C 3 HOH A 95 2595 2318 HOH HOH . C 3 HOH A 96 2596 2228 HOH HOH . C 3 HOH A 97 2597 2337 HOH HOH . C 3 HOH A 98 2598 2304 HOH HOH . C 3 HOH A 99 2599 2303 HOH HOH . C 3 HOH A 100 2600 2282 HOH HOH . C 3 HOH A 101 2601 2286 HOH HOH . C 3 HOH A 102 2602 2368 HOH HOH . C 3 HOH A 103 2603 2331 HOH HOH . C 3 HOH A 104 2604 2315 HOH HOH . C 3 HOH A 105 2605 2334 HOH HOH . C 3 HOH A 106 2606 2346 HOH HOH . C 3 HOH A 107 2607 2325 HOH HOH . C 3 HOH A 108 2608 2339 HOH HOH . C 3 HOH A 109 2609 2326 HOH HOH . C 3 HOH A 110 2610 2294 HOH HOH . C 3 HOH A 111 2611 2253 HOH HOH . C 3 HOH A 112 2612 2289 HOH HOH . C 3 HOH A 113 2613 2305 HOH HOH . C 3 HOH A 114 2614 2301 HOH HOH . C 3 HOH A 115 2615 2320 HOH HOH . C 3 HOH A 116 2616 2312 HOH HOH . C 3 HOH A 117 2617 2323 HOH HOH . C 3 HOH A 118 2618 2317 HOH HOH . C 3 HOH A 119 2619 2321 HOH HOH . C 3 HOH A 120 2620 2319 HOH HOH . C 3 HOH A 121 2621 2338 HOH HOH . C 3 HOH A 122 2622 2281 HOH HOH . C 3 HOH A 123 2623 2324 HOH HOH . C 3 HOH A 124 2624 2353 HOH HOH . C 3 HOH A 125 2625 2307 HOH HOH . C 3 HOH A 126 2626 2335 HOH HOH . C 3 HOH A 127 2627 2327 HOH HOH . C 3 HOH A 128 2628 2336 HOH HOH . C 3 HOH A 129 2629 2348 HOH HOH . C 3 HOH A 130 2630 2277 HOH HOH . C 3 HOH A 131 2631 2340 HOH HOH . C 3 HOH A 132 2632 2311 HOH HOH . C 3 HOH A 133 2633 2330 HOH HOH . C 3 HOH A 134 2634 2341 HOH HOH . C 3 HOH A 135 2635 2345 HOH HOH . C 3 HOH A 136 2636 2287 HOH HOH . C 3 HOH A 137 2637 2344 HOH HOH . C 3 HOH A 138 2638 2293 HOH HOH . C 3 HOH A 139 2639 2313 HOH HOH . C 3 HOH A 140 2640 2308 HOH HOH . C 3 HOH A 141 2641 2329 HOH HOH . C 3 HOH A 142 2642 2343 HOH HOH . C 3 HOH A 143 2643 2332 HOH HOH . C 3 HOH A 144 2644 2295 HOH HOH . C 3 HOH A 145 2645 2352 HOH HOH . C 3 HOH A 146 2646 2272 HOH HOH . C 3 HOH A 147 2647 2362 HOH HOH . C 3 HOH A 148 2648 2351 HOH HOH . C 3 HOH A 149 2649 2349 HOH HOH . C 3 HOH A 150 2650 2363 HOH HOH . C 3 HOH A 151 2651 2316 HOH HOH . C 3 HOH A 152 2652 2355 HOH HOH . C 3 HOH A 153 2653 2365 HOH HOH . C 3 HOH A 154 2654 2342 HOH HOH . C 3 HOH A 155 2655 2359 HOH HOH . C 3 HOH A 156 2656 2347 HOH HOH . C 3 HOH A 157 2657 2360 HOH HOH . C 3 HOH A 158 2658 2358 HOH HOH . C 3 HOH A 159 2659 2367 HOH HOH . C 3 HOH A 160 2660 2238 HOH HOH . C 3 HOH A 161 2661 2366 HOH HOH . C 3 HOH A 162 2662 2278 HOH HOH . C 3 HOH A 163 2663 2370 HOH HOH . C 3 HOH A 164 2664 2364 HOH HOH . C 3 HOH A 165 2665 2372 HOH HOH . C 3 HOH A 166 2666 2361 HOH HOH . C 3 HOH A 167 2667 2354 HOH HOH . C 3 HOH A 168 2668 2357 HOH HOH . C 3 HOH A 169 2669 2369 HOH HOH . C 3 HOH A 170 2670 2333 HOH HOH . C 3 HOH A 171 2671 2371 HOH HOH . C 3 HOH A 172 2672 2373 HOH HOH . C 3 HOH A 173 2673 2375 HOH HOH . C 3 HOH A 174 2674 2374 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 RX7 . . . B 2 20.197 -2.217 10.369 0.42 33.45 ? C4 RX7 2401 A 1 HETATM 2 C C5 RX7 . . . B 2 20.931 -0.923 10.353 0.42 34.36 ? C5 RX7 2401 A 1 HETATM 3 C C6 RX7 . . . B 2 22.616 0.4 9.146 0.42 31.8 ? C6 RX7 2401 A 1 HETATM 4 C C7 RX7 . . . B 2 23.236 0.828 10.476 0.42 31.9 ? C7 RX7 2401 A 1 HETATM 5 C C8 RX7 . . . B 2 21.691 1.481 8.626 0.42 31.35 ? C8 RX7 2401 A 1 HETATM 6 N N RX7 . . . B 2 21.881 -0.872 9.249 0.42 33.51 ? N RX7 2401 A 1 HETATM 7 C C RX7 . . . B 2 21.239 -3.312 12.484 0.42 33.5 ? C RX7 2401 A 1 HETATM 8 O O RX7 . . . B 2 23.35 -0.107 6.96 0.42 32.78 ? O RX7 2401 A 1 HETATM 9 C C1 RX7 . . . B 2 20.312 -3.218 11.325 0.42 34.14 ? C1 RX7 2401 A 1 HETATM 10 C C2 RX7 . . . B 2 19.345 -4.247 11.096 0.42 34.43 ? C2 RX7 2401 A 1 HETATM 11 C C3 RX7 . . . B 2 18.583 -3.974 10.011 0.42 32.01 ? C3 RX7 2401 A 1 HETATM 12 C C9 RX7 . . . B 2 23.828 0.123 8.202 0.42 31.17 ? C9 RX7 2401 A 1 HETATM 13 S S RX7 . . . B 2 18.963 -2.55 9.172 0.42 34.46 ? S RX7 2401 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #