data_5R64 # _model_server_result.job_id 2H36dpVy6cDnUO_43VLxuA _model_server_result.datetime_utc '2024-12-26 20:34:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5R64 # _exptl.entry_id 5R64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5R64 _cell.length_a 59.85 _cell.length_b 59.85 _cell.length_c 215.19 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1,2 B,H,I,J,K,L,N 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -71.73 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 59 A HIS 89 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 A NE2 HIS 59 A HIS 89 1_555 H ZN ZN . B ZN 301 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc3 A NE2 HIS 63 A HIS 93 1_555 I ZN ZN . B ZN 302 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 M O HOH . A HOH 401 4_545 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc5 M O HOH . A HOH 510 2_544 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc6 M O HOH . A HOH 512 4_545 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc7 B OE1 GLU 58 B GLU 88 1_555 H ZN ZN . B ZN 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc8 B NE2 HIS 63 B HIS 93 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc9 B NE1 TRP 119 B TRP 149 1_555 K ZN ZN . B ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc10 B NE2 HIS 134 B HIS 164 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5R64 _atom_sites.fract_transf_matrix[1][1] 0.016708 _atom_sites.fract_transf_matrix[1][2] 0.009647 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 4 ZN ZN . D 2 ZN A 1 302 6 ZN ZN . E 3 ACT A 1 303 1 ACT ACT . F 3 ACT A 1 304 2 ACT ACT . G 4 M0J A 1 305 1 M0J LIG . H 2 ZN B 1 301 1 ZN ZN . I 2 ZN B 1 302 2 ZN ZN . J 2 ZN B 1 303 3 ZN ZN . K 2 ZN B 1 304 5 ZN ZN . L 3 ACT B 1 305 3 ACT ACT . M 5 HOH A 1 401 173 HOH HOH . M 5 HOH A 2 402 268 HOH HOH . M 5 HOH A 3 403 241 HOH HOH . M 5 HOH A 4 404 197 HOH HOH . M 5 HOH A 5 405 134 HOH HOH . M 5 HOH A 6 406 137 HOH HOH . M 5 HOH A 7 407 46 HOH HOH . M 5 HOH A 8 408 90 HOH HOH . M 5 HOH A 9 409 140 HOH HOH . M 5 HOH A 10 410 99 HOH HOH . M 5 HOH A 11 411 187 HOH HOH . M 5 HOH A 12 412 64 HOH HOH . M 5 HOH A 13 413 44 HOH HOH . M 5 HOH A 14 414 165 HOH HOH . M 5 HOH A 15 415 253 HOH HOH . M 5 HOH A 16 416 167 HOH HOH . M 5 HOH A 17 417 91 HOH HOH . M 5 HOH A 18 418 31 HOH HOH . M 5 HOH A 19 419 235 HOH HOH . M 5 HOH A 20 420 124 HOH HOH . M 5 HOH A 21 421 142 HOH HOH . M 5 HOH A 22 422 34 HOH HOH . M 5 HOH A 23 423 42 HOH HOH . M 5 HOH A 24 424 136 HOH HOH . M 5 HOH A 25 425 109 HOH HOH . M 5 HOH A 26 426 130 HOH HOH . M 5 HOH A 27 427 20 HOH HOH . M 5 HOH A 28 428 255 HOH HOH . M 5 HOH A 29 429 81 HOH HOH . M 5 HOH A 30 430 57 HOH HOH . M 5 HOH A 31 431 18 HOH HOH . M 5 HOH A 32 432 210 HOH HOH . M 5 HOH A 33 433 129 HOH HOH . M 5 HOH A 34 434 155 HOH HOH . M 5 HOH A 35 435 86 HOH HOH . M 5 HOH A 36 436 54 HOH HOH . M 5 HOH A 37 437 45 HOH HOH . M 5 HOH A 38 438 232 HOH HOH . M 5 HOH A 39 439 166 HOH HOH . M 5 HOH A 40 440 89 HOH HOH . M 5 HOH A 41 441 126 HOH HOH . M 5 HOH A 42 442 208 HOH HOH . M 5 HOH A 43 443 8 HOH HOH . M 5 HOH A 44 444 41 HOH HOH . M 5 HOH A 45 445 122 HOH HOH . M 5 HOH A 46 446 43 HOH HOH . M 5 HOH A 47 447 132 HOH HOH . M 5 HOH A 48 448 202 HOH HOH . M 5 HOH A 49 449 121 HOH HOH . M 5 HOH A 50 450 23 HOH HOH . M 5 HOH A 51 451 17 HOH HOH . M 5 HOH A 52 452 4 HOH HOH . M 5 HOH A 53 453 12 HOH HOH . M 5 HOH A 54 454 32 HOH HOH . M 5 HOH A 55 455 15 HOH HOH . M 5 HOH A 56 456 222 HOH HOH . M 5 HOH A 57 457 22 HOH HOH . M 5 HOH A 58 458 69 HOH HOH . M 5 HOH A 59 459 30 HOH HOH . M 5 HOH A 60 460 162 HOH HOH . M 5 HOH A 61 461 144 HOH HOH . M 5 HOH A 62 462 146 HOH HOH . M 5 HOH A 63 463 6 HOH HOH . M 5 HOH A 64 464 79 HOH HOH . M 5 HOH A 65 465 70 HOH HOH . M 5 HOH A 66 466 78 HOH HOH . M 5 HOH A 67 467 111 HOH HOH . M 5 HOH A 68 468 11 HOH HOH . M 5 HOH A 69 469 72 HOH HOH . M 5 HOH A 70 470 207 HOH HOH . M 5 HOH A 71 471 219 HOH HOH . M 5 HOH A 72 472 158 HOH HOH . M 5 HOH A 73 473 60 HOH HOH . M 5 HOH A 74 474 88 HOH HOH . M 5 HOH A 75 475 53 HOH HOH . M 5 HOH A 76 476 148 HOH HOH . M 5 HOH A 77 477 2 HOH HOH . M 5 HOH A 78 478 58 HOH HOH . M 5 HOH A 79 479 59 HOH HOH . M 5 HOH A 80 480 201 HOH HOH . M 5 HOH A 81 481 101 HOH HOH . M 5 HOH A 82 482 108 HOH HOH . M 5 HOH A 83 483 51 HOH HOH . M 5 HOH A 84 484 156 HOH HOH . M 5 HOH A 85 485 110 HOH HOH . M 5 HOH A 86 486 50 HOH HOH . M 5 HOH A 87 487 157 HOH HOH . M 5 HOH A 88 488 185 HOH HOH . M 5 HOH A 89 489 38 HOH HOH . M 5 HOH A 90 490 3 HOH HOH . M 5 HOH A 91 491 84 HOH HOH . M 5 HOH A 92 492 174 HOH HOH . M 5 HOH A 93 493 115 HOH HOH . M 5 HOH A 94 494 36 HOH HOH . M 5 HOH A 95 495 138 HOH HOH . M 5 HOH A 96 496 246 HOH HOH . M 5 HOH A 97 497 114 HOH HOH . M 5 HOH A 98 498 238 HOH HOH . M 5 HOH A 99 499 223 HOH HOH . M 5 HOH A 100 500 183 HOH HOH . M 5 HOH A 101 501 179 HOH HOH . M 5 HOH A 102 502 24 HOH HOH . M 5 HOH A 103 503 76 HOH HOH . M 5 HOH A 104 504 102 HOH HOH . M 5 HOH A 105 505 10 HOH HOH . M 5 HOH A 106 506 145 HOH HOH . M 5 HOH A 107 507 16 HOH HOH . M 5 HOH A 108 508 73 HOH HOH . M 5 HOH A 109 509 13 HOH HOH . M 5 HOH A 110 510 150 HOH HOH . M 5 HOH A 111 511 175 HOH HOH . M 5 HOH A 112 512 171 HOH HOH . M 5 HOH A 113 513 184 HOH HOH . M 5 HOH A 114 514 172 HOH HOH . M 5 HOH A 115 515 239 HOH HOH . M 5 HOH A 116 516 262 HOH HOH . M 5 HOH A 117 517 198 HOH HOH . M 5 HOH A 118 518 254 HOH HOH . M 5 HOH A 119 519 252 HOH HOH . M 5 HOH A 120 520 263 HOH HOH . M 5 HOH A 121 521 213 HOH HOH . M 5 HOH A 122 522 149 HOH HOH . M 5 HOH A 123 523 206 HOH HOH . M 5 HOH A 124 524 189 HOH HOH . M 5 HOH A 125 525 237 HOH HOH . M 5 HOH A 126 526 194 HOH HOH . M 5 HOH A 127 527 205 HOH HOH . M 5 HOH A 128 528 227 HOH HOH . N 5 HOH B 1 401 200 HOH HOH . N 5 HOH B 2 402 152 HOH HOH . N 5 HOH B 3 403 85 HOH HOH . N 5 HOH B 4 404 190 HOH HOH . N 5 HOH B 5 405 195 HOH HOH . N 5 HOH B 6 406 153 HOH HOH . N 5 HOH B 7 407 258 HOH HOH . N 5 HOH B 8 408 118 HOH HOH . N 5 HOH B 9 409 82 HOH HOH . N 5 HOH B 10 410 228 HOH HOH . N 5 HOH B 11 411 135 HOH HOH . N 5 HOH B 12 412 100 HOH HOH . N 5 HOH B 13 413 116 HOH HOH . N 5 HOH B 14 414 103 HOH HOH . N 5 HOH B 15 415 225 HOH HOH . N 5 HOH B 16 416 5 HOH HOH . N 5 HOH B 17 417 196 HOH HOH . N 5 HOH B 18 418 244 HOH HOH . N 5 HOH B 19 419 112 HOH HOH . N 5 HOH B 20 420 87 HOH HOH . N 5 HOH B 21 421 247 HOH HOH . N 5 HOH B 22 422 26 HOH HOH . N 5 HOH B 23 423 143 HOH HOH . N 5 HOH B 24 424 161 HOH HOH . N 5 HOH B 25 425 83 HOH HOH . N 5 HOH B 26 426 104 HOH HOH . N 5 HOH B 27 427 139 HOH HOH . N 5 HOH B 28 428 154 HOH HOH . N 5 HOH B 29 429 107 HOH HOH . N 5 HOH B 30 430 7 HOH HOH . N 5 HOH B 31 431 52 HOH HOH . N 5 HOH B 32 432 27 HOH HOH . N 5 HOH B 33 433 1 HOH HOH . N 5 HOH B 34 434 178 HOH HOH . N 5 HOH B 35 435 234 HOH HOH . N 5 HOH B 36 436 226 HOH HOH . N 5 HOH B 37 437 256 HOH HOH . N 5 HOH B 38 438 125 HOH HOH . N 5 HOH B 39 439 9 HOH HOH . N 5 HOH B 40 440 25 HOH HOH . N 5 HOH B 41 441 35 HOH HOH . N 5 HOH B 42 442 33 HOH HOH . N 5 HOH B 43 443 65 HOH HOH . N 5 HOH B 44 444 141 HOH HOH . N 5 HOH B 45 445 92 HOH HOH . N 5 HOH B 46 446 47 HOH HOH . N 5 HOH B 47 447 29 HOH HOH . N 5 HOH B 48 448 147 HOH HOH . N 5 HOH B 49 449 67 HOH HOH . N 5 HOH B 50 450 94 HOH HOH . N 5 HOH B 51 451 19 HOH HOH . N 5 HOH B 52 452 77 HOH HOH . N 5 HOH B 53 453 56 HOH HOH . N 5 HOH B 54 454 120 HOH HOH . N 5 HOH B 55 455 48 HOH HOH . N 5 HOH B 56 456 127 HOH HOH . N 5 HOH B 57 457 221 HOH HOH . N 5 HOH B 58 458 68 HOH HOH . N 5 HOH B 59 459 49 HOH HOH . N 5 HOH B 60 460 66 HOH HOH . N 5 HOH B 61 461 75 HOH HOH . N 5 HOH B 62 462 215 HOH HOH . N 5 HOH B 63 463 191 HOH HOH . N 5 HOH B 64 464 55 HOH HOH . N 5 HOH B 65 465 98 HOH HOH . N 5 HOH B 66 466 151 HOH HOH . N 5 HOH B 67 467 80 HOH HOH . N 5 HOH B 68 468 97 HOH HOH . N 5 HOH B 69 469 28 HOH HOH . N 5 HOH B 70 470 74 HOH HOH . N 5 HOH B 71 471 176 HOH HOH . N 5 HOH B 72 472 267 HOH HOH . N 5 HOH B 73 473 21 HOH HOH . N 5 HOH B 74 474 61 HOH HOH . N 5 HOH B 75 475 119 HOH HOH . N 5 HOH B 76 476 123 HOH HOH . N 5 HOH B 77 477 180 HOH HOH . N 5 HOH B 78 478 218 HOH HOH . N 5 HOH B 79 479 14 HOH HOH . N 5 HOH B 80 480 39 HOH HOH . N 5 HOH B 81 481 113 HOH HOH . N 5 HOH B 82 482 96 HOH HOH . N 5 HOH B 83 483 177 HOH HOH . N 5 HOH B 84 484 163 HOH HOH . N 5 HOH B 85 485 236 HOH HOH . N 5 HOH B 86 486 211 HOH HOH . N 5 HOH B 87 487 212 HOH HOH . N 5 HOH B 88 488 265 HOH HOH . N 5 HOH B 89 489 240 HOH HOH . N 5 HOH B 90 490 245 HOH HOH . N 5 HOH B 91 491 93 HOH HOH . N 5 HOH B 92 492 159 HOH HOH . N 5 HOH B 93 493 233 HOH HOH . N 5 HOH B 94 494 63 HOH HOH . N 5 HOH B 95 495 229 HOH HOH . N 5 HOH B 96 496 261 HOH HOH . N 5 HOH B 97 497 181 HOH HOH . N 5 HOH B 98 498 224 HOH HOH . N 5 HOH B 99 499 186 HOH HOH . N 5 HOH B 100 500 250 HOH HOH . N 5 HOH B 101 501 242 HOH HOH . N 5 HOH B 102 502 182 HOH HOH . N 5 HOH B 103 503 266 HOH HOH . N 5 HOH B 104 504 128 HOH HOH . N 5 HOH B 105 505 217 HOH HOH . N 5 HOH B 106 506 133 HOH HOH . N 5 HOH B 107 507 168 HOH HOH . N 5 HOH B 108 508 260 HOH HOH . N 5 HOH B 109 509 193 HOH HOH . N 5 HOH B 110 510 257 HOH HOH . N 5 HOH B 111 511 95 HOH HOH . N 5 HOH B 112 512 259 HOH HOH . N 5 HOH B 113 513 220 HOH HOH . N 5 HOH B 114 514 248 HOH HOH . N 5 HOH B 115 515 230 HOH HOH . N 5 HOH B 116 516 251 HOH HOH . N 5 HOH B 117 517 204 HOH HOH . N 5 HOH B 118 518 37 HOH HOH . N 5 HOH B 119 519 199 HOH HOH . N 5 HOH B 120 520 62 HOH HOH . N 5 HOH B 121 521 249 HOH HOH . N 5 HOH B 122 522 264 HOH HOH . N 5 HOH B 123 523 216 HOH HOH . N 5 HOH B 124 524 105 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -1.811 _atom_site.Cartn_y -6.23 _atom_site.Cartn_z -17.88 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 136.85 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #