data_5R68
#
_model_server_result.job_id            Agdv6Or0rrXHxRcEQjQ90A 
_model_server_result.datetime_utc      '2024-11-04 20:34:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5r68 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5R68 
#
_exptl.entry_id    5R68 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              163.177 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1-methylbenzotriazol-5-yl)methanol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         67.39 
_cell.angle_beta          68.46 
_cell.angle_gamma         69.57 
_cell.entry_id            5R68 
_cell.length_a            44.88 
_cell.length_b            46.81 
_cell.length_c            58.34 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5R68 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
_chem_comp.formula           'C8 H9 N3 O' 
_chem_comp.formula_weight    163.177 
_chem_comp.id                RYD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1-methylbenzotriazol-5-yl)methanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C5 RYD sing 273 n n 
C5 C4 RYD sing 274 n n 
C4 C6 RYD doub 275 n y 
C4 C3 RYD sing 276 n y 
C6 C7 RYD sing 277 n y 
C3 C2 RYD doub 278 n y 
C7 N1 RYD sing 279 n y 
C7 C1 RYD doub 280 n y 
C2 C1 RYD sing 281 n y 
N1 N2 RYD doub 282 n y 
C1 N RYD sing 283 n y 
N2 N RYD sing 284 n y 
N C RYD sing 285 n n 
C5 H1 RYD sing 286 n n 
C5 H2 RYD sing 287 n n 
C6 H3 RYD sing 288 n n 
O H4 RYD sing 289 n n 
C3 H5 RYD sing 290 n n 
C2 H6 RYD sing 291 n n 
C H7 RYD sing 292 n n 
C H8 RYD sing 293 n n 
C H9 RYD sing 294 n n 
#
_atom_sites.entry_id                     5R68 
_atom_sites.fract_transf_matrix[1][1]    0.022282 
_atom_sites.fract_transf_matrix[1][2]    -0.0083 
_atom_sites.fract_transf_matrix[1][3]    -0.006648 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022797 
_atom_sites.fract_transf_matrix[2][3]    -0.007013 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01928 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO B 1 201 201 EDO EDO . 
D 3 RYD B 1 202 701 RYD LIG . 
E 2 EDO B 1 203 801 EDO EDO . 
F 2 EDO A 1 601 601 EDO EDO . 
G 2 EDO A 1 602 401 EDO EDO . 
H 3 RYD A 1 603 501 RYD LIG . 
I 2 EDO A 1 604 601 EDO EDO . 
J 4 HOH B 1 301 166 HOH HOH . 
J 4 HOH B 2 302 156 HOH HOH . 
J 4 HOH B 3 303 69 HOH HOH . 
J 4 HOH B 4 304 43 HOH HOH . 
J 4 HOH B 5 305 25 HOH HOH . 
J 4 HOH B 6 306 44 HOH HOH . 
J 4 HOH B 7 307 64 HOH HOH . 
J 4 HOH B 8 308 113 HOH HOH . 
J 4 HOH B 9 309 67 HOH HOH . 
J 4 HOH B 10 310 20 HOH HOH . 
J 4 HOH B 11 311 14 HOH HOH . 
J 4 HOH B 12 312 37 HOH HOH . 
J 4 HOH B 13 313 38 HOH HOH . 
J 4 HOH B 14 314 54 HOH HOH . 
J 4 HOH B 15 315 24 HOH HOH . 
J 4 HOH B 16 316 5 HOH HOH . 
J 4 HOH B 17 317 157 HOH HOH . 
J 4 HOH B 18 318 11 HOH HOH . 
J 4 HOH B 19 319 47 HOH HOH . 
J 4 HOH B 20 320 73 HOH HOH . 
J 4 HOH B 21 321 62 HOH HOH . 
J 4 HOH B 22 322 60 HOH HOH . 
J 4 HOH B 23 323 30 HOH HOH . 
J 4 HOH B 24 324 154 HOH HOH . 
J 4 HOH B 25 325 119 HOH HOH . 
J 4 HOH B 26 326 125 HOH HOH . 
J 4 HOH B 27 327 68 HOH HOH . 
J 4 HOH B 28 328 153 HOH HOH . 
J 4 HOH B 29 329 105 HOH HOH . 
J 4 HOH B 30 330 57 HOH HOH . 
J 4 HOH B 31 331 12 HOH HOH . 
J 4 HOH B 32 332 4 HOH HOH . 
J 4 HOH B 33 333 56 HOH HOH . 
J 4 HOH B 34 334 61 HOH HOH . 
J 4 HOH B 35 335 53 HOH HOH . 
J 4 HOH B 36 336 45 HOH HOH . 
J 4 HOH B 37 337 126 HOH HOH . 
J 4 HOH B 38 338 33 HOH HOH . 
J 4 HOH B 39 339 81 HOH HOH . 
J 4 HOH B 40 340 28 HOH HOH . 
J 4 HOH B 41 341 50 HOH HOH . 
J 4 HOH B 42 342 58 HOH HOH . 
J 4 HOH B 43 343 143 HOH HOH . 
J 4 HOH B 44 344 151 HOH HOH . 
J 4 HOH B 45 345 26 HOH HOH . 
J 4 HOH B 46 346 55 HOH HOH . 
J 4 HOH B 47 347 1 HOH HOH . 
J 4 HOH B 48 348 32 HOH HOH . 
J 4 HOH B 49 349 142 HOH HOH . 
J 4 HOH B 50 350 161 HOH HOH . 
J 4 HOH B 51 351 52 HOH HOH . 
J 4 HOH B 52 352 167 HOH HOH . 
J 4 HOH B 53 353 46 HOH HOH . 
J 4 HOH B 54 354 100 HOH HOH . 
J 4 HOH B 55 355 145 HOH HOH . 
J 4 HOH B 56 356 164 HOH HOH . 
J 4 HOH B 57 357 95 HOH HOH . 
J 4 HOH B 58 358 66 HOH HOH . 
J 4 HOH B 59 359 124 HOH HOH . 
J 4 HOH B 60 360 40 HOH HOH . 
J 4 HOH B 61 361 146 HOH HOH . 
J 4 HOH B 62 362 92 HOH HOH . 
J 4 HOH B 63 363 152 HOH HOH . 
J 4 HOH B 64 364 115 HOH HOH . 
J 4 HOH B 65 365 101 HOH HOH . 
J 4 HOH B 66 366 63 HOH HOH . 
J 4 HOH B 67 367 59 HOH HOH . 
J 4 HOH B 68 368 150 HOH HOH . 
J 4 HOH B 69 369 7 HOH HOH . 
K 4 HOH A 1 701 70 HOH HOH . 
K 4 HOH A 2 702 76 HOH HOH . 
K 4 HOH A 3 703 87 HOH HOH . 
K 4 HOH A 4 704 163 HOH HOH . 
K 4 HOH A 5 705 71 HOH HOH . 
K 4 HOH A 6 706 39 HOH HOH . 
K 4 HOH A 7 707 17 HOH HOH . 
K 4 HOH A 8 708 135 HOH HOH . 
K 4 HOH A 9 709 29 HOH HOH . 
K 4 HOH A 10 710 36 HOH HOH . 
K 4 HOH A 11 711 9 HOH HOH . 
K 4 HOH A 12 712 19 HOH HOH . 
K 4 HOH A 13 713 31 HOH HOH . 
K 4 HOH A 14 714 88 HOH HOH . 
K 4 HOH A 15 715 75 HOH HOH . 
K 4 HOH A 16 716 123 HOH HOH . 
K 4 HOH A 17 717 51 HOH HOH . 
K 4 HOH A 18 718 94 HOH HOH . 
K 4 HOH A 19 719 22 HOH HOH . 
K 4 HOH A 20 720 91 HOH HOH . 
K 4 HOH A 21 721 35 HOH HOH . 
K 4 HOH A 22 722 86 HOH HOH . 
K 4 HOH A 23 723 162 HOH HOH . 
K 4 HOH A 24 724 21 HOH HOH . 
K 4 HOH A 25 725 3 HOH HOH . 
K 4 HOH A 26 726 159 HOH HOH . 
K 4 HOH A 27 727 6 HOH HOH . 
K 4 HOH A 28 728 85 HOH HOH . 
K 4 HOH A 29 729 8 HOH HOH . 
K 4 HOH A 30 730 13 HOH HOH . 
K 4 HOH A 31 731 165 HOH HOH . 
K 4 HOH A 32 732 111 HOH HOH . 
K 4 HOH A 33 733 127 HOH HOH . 
K 4 HOH A 34 734 18 HOH HOH . 
K 4 HOH A 35 735 23 HOH HOH . 
K 4 HOH A 36 736 2 HOH HOH . 
K 4 HOH A 37 737 72 HOH HOH . 
K 4 HOH A 38 738 108 HOH HOH . 
K 4 HOH A 39 739 117 HOH HOH . 
K 4 HOH A 40 740 97 HOH HOH . 
K 4 HOH A 41 741 109 HOH HOH . 
K 4 HOH A 42 742 130 HOH HOH . 
K 4 HOH A 43 743 136 HOH HOH . 
K 4 HOH A 44 744 16 HOH HOH . 
K 4 HOH A 45 745 110 HOH HOH . 
K 4 HOH A 46 746 27 HOH HOH . 
K 4 HOH A 47 747 84 HOH HOH . 
K 4 HOH A 48 748 96 HOH HOH . 
K 4 HOH A 49 749 160 HOH HOH . 
K 4 HOH A 50 750 140 HOH HOH . 
K 4 HOH A 51 751 90 HOH HOH . 
K 4 HOH A 52 752 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 RYD . . . D 3 9.835 17.284 29.733 1 23.8 ? N1 RYD 202 B 1 
HETATM 2 C C4 RYD . . . D 3 6.584 18.44 31.275 1 28.17 ? C4 RYD 202 B 1 
HETATM 3 C C5 RYD . . . D 3 5.801 19.557 31.993 1 32.13 ? C5 RYD 202 B 1 
HETATM 4 C C6 RYD . . . D 3 7.989 18.517 31.04 1 25.8 ? C6 RYD 202 B 1 
HETATM 5 C C7 RYD . . . D 3 8.55 17.48 30.249 1 22.53 ? C7 RYD 202 B 1 
HETATM 6 O O RYD . . . D 3 6.392 19.643 33.239 1 36.18 ? O RYD 202 B 1 
HETATM 7 C C3 RYD . . . D 3 5.804 17.369 30.818 1 26.51 ? C3 RYD 202 B 1 
HETATM 8 C C2 RYD . . . D 3 6.33 16.377 30.076 1 25.36 ? C2 RYD 202 B 1 
HETATM 9 C C1 RYD . . . D 3 7.749 16.449 29.756 1 26.01 ? C1 RYD 202 B 1 
HETATM 10 N N2 RYD . . . D 3 9.842 16.244 28.946 1 24.84 ? N2 RYD 202 B 1 
HETATM 11 N N RYD . . . D 3 8.592 15.681 28.942 1 26.1 ? N RYD 202 B 1 
HETATM 12 C C RYD . . . D 3 8.238 14.493 28.193 1 24.76 ? C RYD 202 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#