data_5R69
#
_model_server_result.job_id            gjLnlLWBbyIFFjDlCcu_Cg 
_model_server_result.datetime_utc      '2024-11-06 03:20:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5r69 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    5R69 
#
_exptl.entry_id    5R69 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         67.58 
_cell.angle_beta          68.56 
_cell.angle_gamma         69.02 
_cell.entry_id            5R69 
_cell.length_a            45.6 
_cell.length_b            47.44 
_cell.length_c            58.45 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5R69 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     5R69 
_atom_sites.fract_transf_matrix[1][1]    0.02193 
_atom_sites.fract_transf_matrix[1][2]    -0.008409 
_atom_sites.fract_transf_matrix[1][3]    -0.006462 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022576 
_atom_sites.fract_transf_matrix[2][3]    -0.006796 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019195 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO B 1 201 201 EDO EDO . 
D 3 ZHA B 1 202 701 ZHA LIG . 
E 2 EDO A 1 601 601 EDO EDO . 
F 2 EDO A 1 602 401 EDO EDO . 
G 3 ZHA A 1 603 501 ZHA LIG . 
H 4 HOH B 1 301 124 HOH HOH . 
H 4 HOH B 2 302 167 HOH HOH . 
H 4 HOH B 3 303 92 HOH HOH . 
H 4 HOH B 4 304 43 HOH HOH . 
H 4 HOH B 5 305 25 HOH HOH . 
H 4 HOH B 6 306 20 HOH HOH . 
H 4 HOH B 7 307 61 HOH HOH . 
H 4 HOH B 8 308 46 HOH HOH . 
H 4 HOH B 9 309 126 HOH HOH . 
H 4 HOH B 10 310 123 HOH HOH . 
H 4 HOH B 11 311 64 HOH HOH . 
H 4 HOH B 12 312 33 HOH HOH . 
H 4 HOH B 13 313 101 HOH HOH . 
H 4 HOH B 14 314 62 HOH HOH . 
H 4 HOH B 15 315 30 HOH HOH . 
H 4 HOH B 16 316 58 HOH HOH . 
H 4 HOH B 17 317 35 HOH HOH . 
H 4 HOH B 18 318 69 HOH HOH . 
H 4 HOH B 19 319 53 HOH HOH . 
H 4 HOH B 20 320 164 HOH HOH . 
H 4 HOH B 21 321 14 HOH HOH . 
H 4 HOH B 22 322 37 HOH HOH . 
H 4 HOH B 23 323 73 HOH HOH . 
H 4 HOH B 24 324 125 HOH HOH . 
H 4 HOH B 25 325 4 HOH HOH . 
H 4 HOH B 26 326 119 HOH HOH . 
H 4 HOH B 27 327 28 HOH HOH . 
H 4 HOH B 28 328 11 HOH HOH . 
H 4 HOH B 29 329 5 HOH HOH . 
H 4 HOH B 30 330 50 HOH HOH . 
H 4 HOH B 31 331 115 HOH HOH . 
H 4 HOH B 32 332 55 HOH HOH . 
H 4 HOH B 33 333 100 HOH HOH . 
H 4 HOH B 34 334 44 HOH HOH . 
H 4 HOH B 35 335 26 HOH HOH . 
H 4 HOH B 36 336 24 HOH HOH . 
H 4 HOH B 37 337 38 HOH HOH . 
H 4 HOH B 38 338 156 HOH HOH . 
H 4 HOH B 39 339 12 HOH HOH . 
H 4 HOH B 40 340 45 HOH HOH . 
H 4 HOH B 41 341 57 HOH HOH . 
H 4 HOH B 42 342 161 HOH HOH . 
H 4 HOH B 43 343 81 HOH HOH . 
H 4 HOH B 44 344 1 HOH HOH . 
H 4 HOH B 45 345 52 HOH HOH . 
H 4 HOH B 46 346 142 HOH HOH . 
H 4 HOH B 47 347 67 HOH HOH . 
H 4 HOH B 48 348 49 HOH HOH . 
H 4 HOH B 49 349 47 HOH HOH . 
H 4 HOH B 50 350 48 HOH HOH . 
H 4 HOH B 51 351 154 HOH HOH . 
H 4 HOH B 52 352 68 HOH HOH . 
H 4 HOH B 53 353 54 HOH HOH . 
H 4 HOH B 54 354 32 HOH HOH . 
H 4 HOH B 55 355 145 HOH HOH . 
H 4 HOH B 56 356 95 HOH HOH . 
H 4 HOH B 57 357 40 HOH HOH . 
H 4 HOH B 58 358 143 HOH HOH . 
H 4 HOH B 59 359 153 HOH HOH . 
H 4 HOH B 60 360 148 HOH HOH . 
H 4 HOH B 61 361 63 HOH HOH . 
H 4 HOH B 62 362 56 HOH HOH . 
H 4 HOH B 63 363 105 HOH HOH . 
H 4 HOH B 64 364 146 HOH HOH . 
H 4 HOH B 65 365 157 HOH HOH . 
H 4 HOH B 66 366 96 HOH HOH . 
H 4 HOH B 67 367 59 HOH HOH . 
H 4 HOH B 68 368 150 HOH HOH . 
H 4 HOH B 69 369 152 HOH HOH . 
H 4 HOH B 70 370 151 HOH HOH . 
H 4 HOH B 71 371 7 HOH HOH . 
H 4 HOH B 72 372 147 HOH HOH . 
I 4 HOH A 1 701 76 HOH HOH . 
I 4 HOH A 2 702 88 HOH HOH . 
I 4 HOH A 3 703 75 HOH HOH . 
I 4 HOH A 4 704 71 HOH HOH . 
I 4 HOH A 5 705 117 HOH HOH . 
I 4 HOH A 6 706 29 HOH HOH . 
I 4 HOH A 7 707 109 HOH HOH . 
I 4 HOH A 8 708 162 HOH HOH . 
I 4 HOH A 9 709 136 HOH HOH . 
I 4 HOH A 10 710 165 HOH HOH . 
I 4 HOH A 11 711 31 HOH HOH . 
I 4 HOH A 12 712 168 HOH HOH . 
I 4 HOH A 13 713 9 HOH HOH . 
I 4 HOH A 14 714 39 HOH HOH . 
I 4 HOH A 15 715 22 HOH HOH . 
I 4 HOH A 16 716 87 HOH HOH . 
I 4 HOH A 17 717 19 HOH HOH . 
I 4 HOH A 18 718 127 HOH HOH . 
I 4 HOH A 19 719 3 HOH HOH . 
I 4 HOH A 20 720 130 HOH HOH . 
I 4 HOH A 21 721 163 HOH HOH . 
I 4 HOH A 22 722 36 HOH HOH . 
I 4 HOH A 23 723 8 HOH HOH . 
I 4 HOH A 24 724 21 HOH HOH . 
I 4 HOH A 25 725 72 HOH HOH . 
I 4 HOH A 26 726 70 HOH HOH . 
I 4 HOH A 27 727 27 HOH HOH . 
I 4 HOH A 28 728 17 HOH HOH . 
I 4 HOH A 29 729 84 HOH HOH . 
I 4 HOH A 30 730 159 HOH HOH . 
I 4 HOH A 31 731 6 HOH HOH . 
I 4 HOH A 32 732 108 HOH HOH . 
I 4 HOH A 33 733 97 HOH HOH . 
I 4 HOH A 34 734 60 HOH HOH . 
I 4 HOH A 35 735 135 HOH HOH . 
I 4 HOH A 36 736 111 HOH HOH . 
I 4 HOH A 37 737 2 HOH HOH . 
I 4 HOH A 38 738 166 HOH HOH . 
I 4 HOH A 39 739 16 HOH HOH . 
I 4 HOH A 40 740 13 HOH HOH . 
I 4 HOH A 41 741 91 HOH HOH . 
I 4 HOH A 42 742 18 HOH HOH . 
I 4 HOH A 43 743 51 HOH HOH . 
I 4 HOH A 44 744 110 HOH HOH . 
I 4 HOH A 45 745 169 HOH HOH . 
I 4 HOH A 46 746 23 HOH HOH . 
I 4 HOH A 47 747 85 HOH HOH . 
I 4 HOH A 48 748 80 HOH HOH . 
I 4 HOH A 49 749 94 HOH HOH . 
I 4 HOH A 50 750 99 HOH HOH . 
I 4 HOH A 51 751 140 HOH HOH . 
I 4 HOH A 52 752 160 HOH HOH . 
I 4 HOH A 53 753 129 HOH HOH . 
I 4 HOH A 54 754 41 HOH HOH . 
I 4 HOH A 55 755 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 2 19.947 30.342 23.358 1 57.57 ? C1 EDO 601 A 1 
HETATM 2 O O1 EDO . . . E 2 19.607 29.635 24.554 1 60.26 ? O1 EDO 601 A 1 
HETATM 3 C C2 EDO . . . E 2 18.746 30.796 22.592 1 58.21 ? C2 EDO 601 A 1 
HETATM 4 O O2 EDO . . . E 2 18.992 31.043 21.21 1 55.52 ? O2 EDO 601 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#