data_5R69 # _model_server_result.job_id duYFjgbuxcXHhYvE_mQovQ _model_server_result.datetime_utc '2024-11-22 20:06:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":603}' # _entry.id 5R69 # _exptl.entry_id 5R69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 203.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(5-oxidanylidene-7,8-dihydro-6~{H}-naphthalen-2-yl)ethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 67.58 _cell.angle_beta 68.56 _cell.angle_gamma 69.02 _cell.entry_id 5R69 _cell.length_a 45.6 _cell.length_b 47.44 _cell.length_c 58.45 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C12 H13 N O2' _chem_comp.formula_weight 203.237 _chem_comp.id ZHA _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(5-oxidanylidene-7,8-dihydro-6~{H}-naphthalen-2-yl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 C08 ZHA doub 372 n n C08 C09 ZHA sing 373 n n C08 N07 ZHA sing 374 n n C06 C01 ZHA doub 375 n y C06 C05 ZHA sing 376 n y C01 C02 ZHA sing 377 n y O15 C14 ZHA doub 378 n n N07 C05 ZHA sing 379 n n C05 C04 ZHA doub 380 n y C02 C14 ZHA sing 381 n n C02 C03 ZHA doub 382 n y C14 C13 ZHA sing 383 n n C04 C03 ZHA sing 384 n y C03 C11 ZHA sing 385 n n C13 C12 ZHA sing 386 n n C11 C12 ZHA sing 387 n n C13 H1 ZHA sing 388 n n C13 H2 ZHA sing 389 n n C01 H3 ZHA sing 390 n n C04 H4 ZHA sing 391 n n C06 H5 ZHA sing 392 n n N07 H6 ZHA sing 393 n n C09 H7 ZHA sing 394 n n C09 H8 ZHA sing 395 n n C09 H9 ZHA sing 396 n n C11 H10 ZHA sing 397 n n C11 H11 ZHA sing 398 n n C12 H12 ZHA sing 399 n n C12 H13 ZHA sing 400 n n # _atom_sites.entry_id 5R69 _atom_sites.fract_transf_matrix[1][1] 0.02193 _atom_sites.fract_transf_matrix[1][2] -0.008409 _atom_sites.fract_transf_matrix[1][3] -0.006462 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022576 _atom_sites.fract_transf_matrix[2][3] -0.006796 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO B 1 201 201 EDO EDO . D 3 ZHA B 1 202 701 ZHA LIG . E 2 EDO A 1 601 601 EDO EDO . F 2 EDO A 1 602 401 EDO EDO . G 3 ZHA A 1 603 501 ZHA LIG . H 4 HOH B 1 301 124 HOH HOH . H 4 HOH B 2 302 167 HOH HOH . H 4 HOH B 3 303 92 HOH HOH . H 4 HOH B 4 304 43 HOH HOH . H 4 HOH B 5 305 25 HOH HOH . H 4 HOH B 6 306 20 HOH HOH . H 4 HOH B 7 307 61 HOH HOH . H 4 HOH B 8 308 46 HOH HOH . H 4 HOH B 9 309 126 HOH HOH . H 4 HOH B 10 310 123 HOH HOH . H 4 HOH B 11 311 64 HOH HOH . H 4 HOH B 12 312 33 HOH HOH . H 4 HOH B 13 313 101 HOH HOH . H 4 HOH B 14 314 62 HOH HOH . H 4 HOH B 15 315 30 HOH HOH . H 4 HOH B 16 316 58 HOH HOH . H 4 HOH B 17 317 35 HOH HOH . H 4 HOH B 18 318 69 HOH HOH . H 4 HOH B 19 319 53 HOH HOH . H 4 HOH B 20 320 164 HOH HOH . H 4 HOH B 21 321 14 HOH HOH . H 4 HOH B 22 322 37 HOH HOH . H 4 HOH B 23 323 73 HOH HOH . H 4 HOH B 24 324 125 HOH HOH . H 4 HOH B 25 325 4 HOH HOH . H 4 HOH B 26 326 119 HOH HOH . H 4 HOH B 27 327 28 HOH HOH . H 4 HOH B 28 328 11 HOH HOH . H 4 HOH B 29 329 5 HOH HOH . H 4 HOH B 30 330 50 HOH HOH . H 4 HOH B 31 331 115 HOH HOH . H 4 HOH B 32 332 55 HOH HOH . H 4 HOH B 33 333 100 HOH HOH . H 4 HOH B 34 334 44 HOH HOH . H 4 HOH B 35 335 26 HOH HOH . H 4 HOH B 36 336 24 HOH HOH . H 4 HOH B 37 337 38 HOH HOH . H 4 HOH B 38 338 156 HOH HOH . H 4 HOH B 39 339 12 HOH HOH . H 4 HOH B 40 340 45 HOH HOH . H 4 HOH B 41 341 57 HOH HOH . H 4 HOH B 42 342 161 HOH HOH . H 4 HOH B 43 343 81 HOH HOH . H 4 HOH B 44 344 1 HOH HOH . H 4 HOH B 45 345 52 HOH HOH . H 4 HOH B 46 346 142 HOH HOH . H 4 HOH B 47 347 67 HOH HOH . H 4 HOH B 48 348 49 HOH HOH . H 4 HOH B 49 349 47 HOH HOH . H 4 HOH B 50 350 48 HOH HOH . H 4 HOH B 51 351 154 HOH HOH . H 4 HOH B 52 352 68 HOH HOH . H 4 HOH B 53 353 54 HOH HOH . H 4 HOH B 54 354 32 HOH HOH . H 4 HOH B 55 355 145 HOH HOH . H 4 HOH B 56 356 95 HOH HOH . H 4 HOH B 57 357 40 HOH HOH . H 4 HOH B 58 358 143 HOH HOH . H 4 HOH B 59 359 153 HOH HOH . H 4 HOH B 60 360 148 HOH HOH . H 4 HOH B 61 361 63 HOH HOH . H 4 HOH B 62 362 56 HOH HOH . H 4 HOH B 63 363 105 HOH HOH . H 4 HOH B 64 364 146 HOH HOH . H 4 HOH B 65 365 157 HOH HOH . H 4 HOH B 66 366 96 HOH HOH . H 4 HOH B 67 367 59 HOH HOH . H 4 HOH B 68 368 150 HOH HOH . H 4 HOH B 69 369 152 HOH HOH . H 4 HOH B 70 370 151 HOH HOH . H 4 HOH B 71 371 7 HOH HOH . H 4 HOH B 72 372 147 HOH HOH . I 4 HOH A 1 701 76 HOH HOH . I 4 HOH A 2 702 88 HOH HOH . I 4 HOH A 3 703 75 HOH HOH . I 4 HOH A 4 704 71 HOH HOH . I 4 HOH A 5 705 117 HOH HOH . I 4 HOH A 6 706 29 HOH HOH . I 4 HOH A 7 707 109 HOH HOH . I 4 HOH A 8 708 162 HOH HOH . I 4 HOH A 9 709 136 HOH HOH . I 4 HOH A 10 710 165 HOH HOH . I 4 HOH A 11 711 31 HOH HOH . I 4 HOH A 12 712 168 HOH HOH . I 4 HOH A 13 713 9 HOH HOH . I 4 HOH A 14 714 39 HOH HOH . I 4 HOH A 15 715 22 HOH HOH . I 4 HOH A 16 716 87 HOH HOH . I 4 HOH A 17 717 19 HOH HOH . I 4 HOH A 18 718 127 HOH HOH . I 4 HOH A 19 719 3 HOH HOH . I 4 HOH A 20 720 130 HOH HOH . I 4 HOH A 21 721 163 HOH HOH . I 4 HOH A 22 722 36 HOH HOH . I 4 HOH A 23 723 8 HOH HOH . I 4 HOH A 24 724 21 HOH HOH . I 4 HOH A 25 725 72 HOH HOH . I 4 HOH A 26 726 70 HOH HOH . I 4 HOH A 27 727 27 HOH HOH . I 4 HOH A 28 728 17 HOH HOH . I 4 HOH A 29 729 84 HOH HOH . I 4 HOH A 30 730 159 HOH HOH . I 4 HOH A 31 731 6 HOH HOH . I 4 HOH A 32 732 108 HOH HOH . I 4 HOH A 33 733 97 HOH HOH . I 4 HOH A 34 734 60 HOH HOH . I 4 HOH A 35 735 135 HOH HOH . I 4 HOH A 36 736 111 HOH HOH . I 4 HOH A 37 737 2 HOH HOH . I 4 HOH A 38 738 166 HOH HOH . I 4 HOH A 39 739 16 HOH HOH . I 4 HOH A 40 740 13 HOH HOH . I 4 HOH A 41 741 91 HOH HOH . I 4 HOH A 42 742 18 HOH HOH . I 4 HOH A 43 743 51 HOH HOH . I 4 HOH A 44 744 110 HOH HOH . I 4 HOH A 45 745 169 HOH HOH . I 4 HOH A 46 746 23 HOH HOH . I 4 HOH A 47 747 85 HOH HOH . I 4 HOH A 48 748 80 HOH HOH . I 4 HOH A 49 749 94 HOH HOH . I 4 HOH A 50 750 99 HOH HOH . I 4 HOH A 51 751 140 HOH HOH . I 4 HOH A 52 752 160 HOH HOH . I 4 HOH A 53 753 129 HOH HOH . I 4 HOH A 54 754 41 HOH HOH . I 4 HOH A 55 755 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 ZHA . . . G 3 36.13 33.81 2.252 1 22.94 ? C13 ZHA 603 A 1 HETATM 2 C C01 ZHA . . . G 3 33.86 36.032 0.095 1 27.33 ? C01 ZHA 603 A 1 HETATM 3 C C02 ZHA . . . G 3 34.968 35.565 0.844 1 25.69 ? C02 ZHA 603 A 1 HETATM 4 C C03 ZHA . . . G 3 36.125 36.351 0.949 1 26.13 ? C03 ZHA 603 A 1 HETATM 5 C C04 ZHA . . . G 3 36.201 37.587 0.347 1 28.51 ? C04 ZHA 603 A 1 HETATM 6 C C05 ZHA . . . G 3 35.128 38.064 -0.39 1 30.57 ? C05 ZHA 603 A 1 HETATM 7 C C06 ZHA . . . G 3 33.927 37.273 -0.521 1 28.71 ? C06 ZHA 603 A 1 HETATM 8 N N07 ZHA . . . G 3 35.372 39.319 -0.983 1 32.96 ? N07 ZHA 603 A 1 HETATM 9 C C08 ZHA . . . G 3 34.491 40.003 -1.776 1 38.4 ? C08 ZHA 603 A 1 HETATM 10 C C09 ZHA . . . G 3 34.984 41.346 -2.3 1 37.05 ? C09 ZHA 603 A 1 HETATM 11 O O10 ZHA . . . G 3 33.402 39.541 -2.032 1 41.67 ? O10 ZHA 603 A 1 HETATM 12 C C11 ZHA . . . G 3 37.35 35.854 1.661 1 24.85 ? C11 ZHA 603 A 1 HETATM 13 C C12 ZHA . . . G 3 36.983 34.921 2.77 1 23.52 ? C12 ZHA 603 A 1 HETATM 14 C C14 ZHA . . . G 3 34.923 34.275 1.514 1 24.01 ? C14 ZHA 603 A 1 HETATM 15 O O15 ZHA . . . G 3 33.973 33.571 1.483 1 27.2 ? O15 ZHA 603 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #