data_5R88 # _model_server_result.job_id nuc7_GaQySG118xQ3WxbkA _model_server_result.datetime_utc '2024-11-13 07:37:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5R88 # _exptl.entry_id 5R88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 234.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-~{N}-(4-aminocarbonylphenyl)oxolane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R88 _cell.length_a 54.52 _cell.length_b 54.52 _cell.length_c 75.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H14 N2 O3' _chem_comp.formula_weight 234.251 _chem_comp.id LWA _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-~{N}-(4-aminocarbonylphenyl)oxolane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C6 LWA doub 194 n n C6 N LWA sing 195 n n C6 C5 LWA sing 196 n n C C5 LWA doub 197 n y C C1 LWA sing 198 n y C5 C4 LWA sing 199 n y C1 C2 LWA doub 200 n y C4 C3 LWA doub 201 n y C2 C3 LWA sing 202 n y C2 N1 LWA sing 203 n n N1 C7 LWA sing 204 n n C11 C10 LWA sing 205 n n C11 O2 LWA sing 206 n n C10 C9 LWA sing 207 n n O2 C8 LWA sing 208 n n C7 C8 LWA sing 209 n n C7 O1 LWA doub 210 n n C9 C8 LWA sing 211 n n N1 H1 LWA sing 212 n n C4 H2 LWA sing 213 n n C8 H3 LWA sing 214 n n C10 H4 LWA sing 215 n n C10 H5 LWA sing 216 n n N H6 LWA sing 217 n n N H7 LWA sing 218 n n C H8 LWA sing 219 n n C1 H9 LWA sing 220 n n C11 H10 LWA sing 221 n n C11 H11 LWA sing 222 n n C3 H12 LWA sing 223 n n C9 H13 LWA sing 224 n n C9 H14 LWA sing 225 n n # _atom_sites.entry_id 5R88 _atom_sites.fract_transf_matrix[1][1] 0.018342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 160 SO4 SO4 . C 2 SO4 A 1 202 161 SO4 SO4 . D 3 LWA A 1 203 401 LWA LIG . E 4 HOH A 1 301 300 HOH HOH . E 4 HOH A 2 302 241 HOH HOH . E 4 HOH A 3 303 326 HOH HOH . E 4 HOH A 4 304 271 HOH HOH . E 4 HOH A 5 305 292 HOH HOH . E 4 HOH A 6 306 320 HOH HOH . E 4 HOH A 7 307 247 HOH HOH . E 4 HOH A 8 308 213 HOH HOH . E 4 HOH A 9 309 267 HOH HOH . E 4 HOH A 10 310 237 HOH HOH . E 4 HOH A 11 311 34 HOH HOH . E 4 HOH A 12 312 214 HOH HOH . E 4 HOH A 13 313 262 HOH HOH . E 4 HOH A 14 314 208 HOH HOH . E 4 HOH A 15 315 240 HOH HOH . E 4 HOH A 16 316 325 HOH HOH . E 4 HOH A 17 317 232 HOH HOH . E 4 HOH A 18 318 203 HOH HOH . E 4 HOH A 19 319 322 HOH HOH . E 4 HOH A 20 320 244 HOH HOH . E 4 HOH A 21 321 257 HOH HOH . E 4 HOH A 22 322 220 HOH HOH . E 4 HOH A 23 323 200 HOH HOH . E 4 HOH A 24 324 28 HOH HOH . E 4 HOH A 25 325 238 HOH HOH . E 4 HOH A 26 326 19 HOH HOH . E 4 HOH A 27 327 211 HOH HOH . E 4 HOH A 28 328 287 HOH HOH . E 4 HOH A 29 329 216 HOH HOH . E 4 HOH A 30 330 18 HOH HOH . E 4 HOH A 31 331 229 HOH HOH . E 4 HOH A 32 332 204 HOH HOH . E 4 HOH A 33 333 303 HOH HOH . E 4 HOH A 34 334 227 HOH HOH . E 4 HOH A 35 335 338 HOH HOH . E 4 HOH A 36 336 223 HOH HOH . E 4 HOH A 37 337 236 HOH HOH . E 4 HOH A 38 338 201 HOH HOH . E 4 HOH A 39 339 334 HOH HOH . E 4 HOH A 40 340 202 HOH HOH . E 4 HOH A 41 341 226 HOH HOH . E 4 HOH A 42 342 209 HOH HOH . E 4 HOH A 43 343 294 HOH HOH . E 4 HOH A 44 344 222 HOH HOH . E 4 HOH A 45 345 218 HOH HOH . E 4 HOH A 46 346 251 HOH HOH . E 4 HOH A 47 347 289 HOH HOH . E 4 HOH A 48 348 312 HOH HOH . E 4 HOH A 49 349 239 HOH HOH . E 4 HOH A 50 350 274 HOH HOH . E 4 HOH A 51 351 228 HOH HOH . E 4 HOH A 52 352 327 HOH HOH . E 4 HOH A 53 353 235 HOH HOH . E 4 HOH A 54 354 265 HOH HOH . E 4 HOH A 55 355 255 HOH HOH . E 4 HOH A 56 356 321 HOH HOH . E 4 HOH A 57 357 269 HOH HOH . E 4 HOH A 58 358 23 HOH HOH . E 4 HOH A 59 359 248 HOH HOH . E 4 HOH A 60 360 245 HOH HOH . E 4 HOH A 61 361 206 HOH HOH . E 4 HOH A 62 362 12 HOH HOH . E 4 HOH A 63 363 346 HOH HOH . E 4 HOH A 64 364 207 HOH HOH . E 4 HOH A 65 365 283 HOH HOH . E 4 HOH A 66 366 233 HOH HOH . E 4 HOH A 67 367 246 HOH HOH . E 4 HOH A 68 368 254 HOH HOH . E 4 HOH A 69 369 225 HOH HOH . E 4 HOH A 70 370 270 HOH HOH . E 4 HOH A 71 371 307 HOH HOH . E 4 HOH A 72 372 15 HOH HOH . E 4 HOH A 73 373 345 HOH HOH . E 4 HOH A 74 374 250 HOH HOH . E 4 HOH A 75 375 205 HOH HOH . E 4 HOH A 76 376 314 HOH HOH . E 4 HOH A 77 377 284 HOH HOH . E 4 HOH A 78 378 297 HOH HOH . E 4 HOH A 79 379 348 HOH HOH . E 4 HOH A 80 380 221 HOH HOH . E 4 HOH A 81 381 242 HOH HOH . E 4 HOH A 82 382 266 HOH HOH . E 4 HOH A 83 383 323 HOH HOH . E 4 HOH A 84 384 279 HOH HOH . E 4 HOH A 85 385 35 HOH HOH . E 4 HOH A 86 386 305 HOH HOH . E 4 HOH A 87 387 290 HOH HOH . E 4 HOH A 88 388 224 HOH HOH . E 4 HOH A 89 389 317 HOH HOH . E 4 HOH A 90 390 212 HOH HOH . E 4 HOH A 91 391 302 HOH HOH . E 4 HOH A 92 392 298 HOH HOH . E 4 HOH A 93 393 286 HOH HOH . E 4 HOH A 94 394 217 HOH HOH . E 4 HOH A 95 395 31 HOH HOH . E 4 HOH A 96 396 277 HOH HOH . E 4 HOH A 97 397 285 HOH HOH . E 4 HOH A 98 398 304 HOH HOH . E 4 HOH A 99 399 234 HOH HOH . E 4 HOH A 100 400 219 HOH HOH . E 4 HOH A 101 401 282 HOH HOH . E 4 HOH A 102 402 25 HOH HOH . E 4 HOH A 103 403 264 HOH HOH . E 4 HOH A 104 404 16 HOH HOH . E 4 HOH A 105 405 14 HOH HOH . E 4 HOH A 106 406 258 HOH HOH . E 4 HOH A 107 407 253 HOH HOH . E 4 HOH A 108 408 263 HOH HOH . E 4 HOH A 109 409 8 HOH HOH . E 4 HOH A 110 410 2 HOH HOH . E 4 HOH A 111 411 311 HOH HOH . E 4 HOH A 112 412 347 HOH HOH . E 4 HOH A 113 413 337 HOH HOH . E 4 HOH A 114 414 256 HOH HOH . E 4 HOH A 115 415 11 HOH HOH . E 4 HOH A 116 416 231 HOH HOH . E 4 HOH A 117 417 340 HOH HOH . E 4 HOH A 118 418 20 HOH HOH . E 4 HOH A 119 419 260 HOH HOH . E 4 HOH A 120 420 330 HOH HOH . E 4 HOH A 121 421 310 HOH HOH . E 4 HOH A 122 422 32 HOH HOH . E 4 HOH A 123 423 291 HOH HOH . E 4 HOH A 124 424 299 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LWA . . . D 3 39.525 1.311 73.87 0.36 37.72 ? N1 LWA 203 A 1 HETATM 2 C C4 LWA . . . D 3 40.227 -1.614 76.073 0.36 43.15 ? C4 LWA 203 A 1 HETATM 3 C C5 LWA . . . D 3 40.007 -2.624 75.131 0.36 43.94 ? C5 LWA 203 A 1 HETATM 4 C C6 LWA . . . D 3 40.001 -4.038 75.555 0.36 44.56 ? C6 LWA 203 A 1 HETATM 5 C C7 LWA . . . D 3 39.286 2.494 74.527 0.36 36.5 ? C7 LWA 203 A 1 HETATM 6 C C8 LWA . . . D 3 38.938 3.628 73.536 0.36 34.73 ? C8 LWA 203 A 1 HETATM 7 C C10 LWA . . . D 3 39.377 4.977 71.746 0.36 33.32 ? C10 LWA 203 A 1 HETATM 8 N N LWA . . . D 3 39.881 -4.296 76.902 0.36 45.81 ? N LWA 203 A 1 HETATM 9 C C LWA . . . D 3 39.752 -2.302 73.805 0.36 44.06 ? C LWA 203 A 1 HETATM 10 O O LWA . . . D 3 40.088 -4.967 74.756 0.36 45.85 ? O LWA 203 A 1 HETATM 11 C C1 LWA . . . D 3 39.684 -0.985 73.419 0.36 42.58 ? C1 LWA 203 A 1 HETATM 12 C C11 LWA . . . D 3 38.782 5.776 72.91 0.36 30.94 ? C11 LWA 203 A 1 HETATM 13 C C2 LWA . . . D 3 39.86 0.046 74.366 0.36 41.23 ? C2 LWA 203 A 1 HETATM 14 C C3 LWA . . . D 3 40.158 -0.275 75.7 0.36 43.34 ? C3 LWA 203 A 1 HETATM 15 C C9 LWA . . . D 3 40.086 3.937 72.589 0.36 33.72 ? C9 LWA 203 A 1 HETATM 16 O O1 LWA . . . D 3 39.277 2.638 75.751 0.36 33.79 ? O1 LWA 203 A 1 HETATM 17 O O2 LWA . . . D 3 38.689 4.895 74.015 0.36 33.82 ? O2 LWA 203 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #