data_5R89 # _model_server_result.job_id Gs8hIoFgnjYx8WZGzeBvpQ _model_server_result.datetime_utc '2024-11-22 00:04:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r89 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5R89 # _exptl.entry_id 5R89 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.245 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(2~{S})-2-methylmorpholin-4-yl]-2-pyrazol-1-yl-ethanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R89 _cell.length_a 54.47 _cell.length_b 54.47 _cell.length_c 75.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N3 O2' _chem_comp.formula_weight 209.245 _chem_comp.id S7D _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(2~{S})-2-methylmorpholin-4-yl]-2-pyrazol-1-yl-ethanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 S7D sing 277 n n C1 O S7D sing 278 n n C1 C2 S7D sing 279 n n O C4 S7D sing 280 n n C2 N S7D sing 281 n n C4 C3 S7D sing 282 n n N C3 S7D sing 283 n n N C5 S7D sing 284 n n C6 C5 S7D sing 285 n n C6 N1 S7D sing 286 n n C5 O1 S7D doub 287 n n N1 N2 S7D sing 288 n y N1 C7 S7D sing 289 n y N2 C9 S7D doub 290 n y C7 C8 S7D doub 291 n y C9 C8 S7D sing 292 n y C4 H1 S7D sing 293 n n C4 H2 S7D sing 294 n n C6 H3 S7D sing 295 n n C6 H4 S7D sing 296 n n C7 H5 S7D sing 297 n n C8 H6 S7D sing 298 n n C H7 S7D sing 299 n n C H8 S7D sing 300 n n C H9 S7D sing 301 n n C1 H10 S7D sing 302 n n C2 H11 S7D sing 303 n n C2 H12 S7D sing 304 n n C3 H13 S7D sing 305 n n C3 H14 S7D sing 306 n n C9 H15 S7D sing 307 n n # _atom_sites.entry_id 5R89 _atom_sites.fract_transf_matrix[1][1] 0.018359 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018359 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 160 SO4 SO4 . C 2 SO4 A 1 202 161 SO4 SO4 . D 3 S7D A 1 203 401 S7D LIG . E 4 HOH A 1 301 303 HOH HOH . E 4 HOH A 2 302 326 HOH HOH . E 4 HOH A 3 303 276 HOH HOH . E 4 HOH A 4 304 268 HOH HOH . E 4 HOH A 5 305 262 HOH HOH . E 4 HOH A 6 306 338 HOH HOH . E 4 HOH A 7 307 267 HOH HOH . E 4 HOH A 8 308 247 HOH HOH . E 4 HOH A 9 309 226 HOH HOH . E 4 HOH A 10 310 232 HOH HOH . E 4 HOH A 11 311 214 HOH HOH . E 4 HOH A 12 312 334 HOH HOH . E 4 HOH A 13 313 237 HOH HOH . E 4 HOH A 14 314 294 HOH HOH . E 4 HOH A 15 315 240 HOH HOH . E 4 HOH A 16 316 238 HOH HOH . E 4 HOH A 17 317 239 HOH HOH . E 4 HOH A 18 318 213 HOH HOH . E 4 HOH A 19 319 203 HOH HOH . E 4 HOH A 20 320 220 HOH HOH . E 4 HOH A 21 321 200 HOH HOH . E 4 HOH A 22 322 287 HOH HOH . E 4 HOH A 23 323 23 HOH HOH . E 4 HOH A 24 324 19 HOH HOH . E 4 HOH A 25 325 202 HOH HOH . E 4 HOH A 26 326 257 HOH HOH . E 4 HOH A 27 327 322 HOH HOH . E 4 HOH A 28 328 211 HOH HOH . E 4 HOH A 29 329 223 HOH HOH . E 4 HOH A 30 330 251 HOH HOH . E 4 HOH A 31 331 208 HOH HOH . E 4 HOH A 32 332 245 HOH HOH . E 4 HOH A 33 333 201 HOH HOH . E 4 HOH A 34 334 218 HOH HOH . E 4 HOH A 35 335 216 HOH HOH . E 4 HOH A 36 336 228 HOH HOH . E 4 HOH A 37 337 204 HOH HOH . E 4 HOH A 38 338 34 HOH HOH . E 4 HOH A 39 339 222 HOH HOH . E 4 HOH A 40 340 206 HOH HOH . E 4 HOH A 41 341 265 HOH HOH . E 4 HOH A 42 342 255 HOH HOH . E 4 HOH A 43 343 209 HOH HOH . E 4 HOH A 44 344 236 HOH HOH . E 4 HOH A 45 345 346 HOH HOH . E 4 HOH A 46 346 274 HOH HOH . E 4 HOH A 47 347 235 HOH HOH . E 4 HOH A 48 348 248 HOH HOH . E 4 HOH A 49 349 339 HOH HOH . E 4 HOH A 50 350 283 HOH HOH . E 4 HOH A 51 351 229 HOH HOH . E 4 HOH A 52 352 207 HOH HOH . E 4 HOH A 53 353 348 HOH HOH . E 4 HOH A 54 354 233 HOH HOH . E 4 HOH A 55 355 215 HOH HOH . E 4 HOH A 56 356 327 HOH HOH . E 4 HOH A 57 357 221 HOH HOH . E 4 HOH A 58 358 250 HOH HOH . E 4 HOH A 59 359 243 HOH HOH . E 4 HOH A 60 360 323 HOH HOH . E 4 HOH A 61 361 290 HOH HOH . E 4 HOH A 62 362 212 HOH HOH . E 4 HOH A 63 363 305 HOH HOH . E 4 HOH A 64 364 15 HOH HOH . E 4 HOH A 65 365 270 HOH HOH . E 4 HOH A 66 366 321 HOH HOH . E 4 HOH A 67 367 297 HOH HOH . E 4 HOH A 68 368 279 HOH HOH . E 4 HOH A 69 369 307 HOH HOH . E 4 HOH A 70 370 317 HOH HOH . E 4 HOH A 71 371 254 HOH HOH . E 4 HOH A 72 372 242 HOH HOH . E 4 HOH A 73 373 285 HOH HOH . E 4 HOH A 74 374 224 HOH HOH . E 4 HOH A 75 375 286 HOH HOH . E 4 HOH A 76 376 284 HOH HOH . E 4 HOH A 77 377 302 HOH HOH . E 4 HOH A 78 378 219 HOH HOH . E 4 HOH A 79 379 277 HOH HOH . E 4 HOH A 80 380 25 HOH HOH . E 4 HOH A 81 381 282 HOH HOH . E 4 HOH A 82 382 264 HOH HOH . E 4 HOH A 83 383 31 HOH HOH . E 4 HOH A 84 384 217 HOH HOH . E 4 HOH A 85 385 234 HOH HOH . E 4 HOH A 86 386 258 HOH HOH . E 4 HOH A 87 387 14 HOH HOH . E 4 HOH A 88 388 22 HOH HOH . E 4 HOH A 89 389 320 HOH HOH . E 4 HOH A 90 390 260 HOH HOH . E 4 HOH A 91 391 8 HOH HOH . E 4 HOH A 92 392 253 HOH HOH . E 4 HOH A 93 393 35 HOH HOH . E 4 HOH A 94 394 11 HOH HOH . E 4 HOH A 95 395 347 HOH HOH . E 4 HOH A 96 396 319 HOH HOH . E 4 HOH A 97 397 231 HOH HOH . E 4 HOH A 98 398 311 HOH HOH . E 4 HOH A 99 399 256 HOH HOH . E 4 HOH A 100 400 32 HOH HOH . E 4 HOH A 101 401 335 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 S7D . . . D 3 35.087 1.953 76.867 0.35 33.63 ? N1 S7D 203 A 1 HETATM 2 C C4 S7D . . . D 3 40.604 3.887 75.027 0.35 25.43 ? C4 S7D 203 A 1 HETATM 3 C C5 S7D . . . D 3 37.378 2.33 76.081 0.35 31.47 ? C5 S7D 203 A 1 HETATM 4 C C6 S7D . . . D 3 35.893 2.342 75.697 0.35 33.46 ? C6 S7D 203 A 1 HETATM 5 C C7 S7D . . . D 3 34.816 2.784 77.966 0.35 34.25 ? C7 S7D 203 A 1 HETATM 6 C C8 S7D . . . D 3 34.025 2.042 78.816 0.35 36.02 ? C8 S7D 203 A 1 HETATM 7 N N S7D . . . D 3 38.349 2.839 75.187 0.35 28.09 ? N S7D 203 A 1 HETATM 8 C C S7D . . . D 3 38.67 5.086 72.117 0.35 24.1 ? C S7D 203 A 1 HETATM 9 O O S7D . . . D 3 40.294 4.331 73.732 0.35 23.7 ? O S7D 203 A 1 HETATM 10 C C1 S7D . . . D 3 38.883 4.615 73.569 0.35 24.64 ? C1 S7D 203 A 1 HETATM 11 C C2 S7D . . . D 3 38.088 3.298 73.79 0.35 25.64 ? C2 S7D 203 A 1 HETATM 12 C C3 S7D . . . D 3 39.779 2.65 75.446 0.35 26.56 ? C3 S7D 203 A 1 HETATM 13 C C9 S7D . . . D 3 33.849 0.762 78.183 0.35 35.84 ? C9 S7D 203 A 1 HETATM 14 N N2 S7D . . . D 3 34.504 0.715 76.98 0.35 35.58 ? N2 S7D 203 A 1 HETATM 15 O O1 S7D . . . D 3 37.707 1.886 77.176 0.35 34.82 ? O1 S7D 203 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #