data_5R8D # _model_server_result.job_id fZYY5ZILM1nUZmYHjsURdg _model_server_result.datetime_utc '2024-11-21 23:56:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5R8D # _exptl.entry_id 5R8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 191.111 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(trifluoromethyl)pyrimidine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R8D _cell.length_a 54.63 _cell.length_b 54.63 _cell.length_c 75.13 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H4 F3 N3 O' _chem_comp.formula_weight 191.111 _chem_comp.id S7J _chem_comp.mon_nstd_flag . _chem_comp.name 2-(trifluoromethyl)pyrimidine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C5 S7J sing 277 n n F C5 S7J sing 278 n n C5 F2 S7J sing 279 n n C5 C3 S7J sing 280 n n C3 N1 S7J doub 281 n y C3 N2 S7J sing 282 n y N1 C2 S7J sing 283 n y N2 C4 S7J doub 284 n y C2 C1 S7J doub 285 n y C4 C1 S7J sing 286 n y C1 C S7J sing 287 n n C N S7J sing 288 n n C O S7J doub 289 n n C4 H1 S7J sing 290 n n N H2 S7J sing 291 n n N H3 S7J sing 292 n n C2 H4 S7J sing 293 n n # _atom_sites.entry_id 5R8D _atom_sites.fract_transf_matrix[1][1] 0.018305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 160 SO4 SO4 . C 2 SO4 A 1 202 161 SO4 SO4 . D 3 S7J A 1 203 401 S7J LIG . E 4 HOH A 1 301 300 HOH HOH . E 4 HOH A 2 302 326 HOH HOH . E 4 HOH A 3 303 17 HOH HOH . E 4 HOH A 4 304 241 HOH HOH . E 4 HOH A 5 305 268 HOH HOH . E 4 HOH A 6 306 247 HOH HOH . E 4 HOH A 7 307 276 HOH HOH . E 4 HOH A 8 308 292 HOH HOH . E 4 HOH A 9 309 325 HOH HOH . E 4 HOH A 10 310 271 HOH HOH . E 4 HOH A 11 311 317 HOH HOH . E 4 HOH A 12 312 287 HOH HOH . E 4 HOH A 13 313 214 HOH HOH . E 4 HOH A 14 314 237 HOH HOH . E 4 HOH A 15 315 213 HOH HOH . E 4 HOH A 16 316 262 HOH HOH . E 4 HOH A 17 317 208 HOH HOH . E 4 HOH A 18 318 19 HOH HOH . E 4 HOH A 19 319 257 HOH HOH . E 4 HOH A 20 320 35 HOH HOH . E 4 HOH A 21 321 18 HOH HOH . E 4 HOH A 22 322 322 HOH HOH . E 4 HOH A 23 323 34 HOH HOH . E 4 HOH A 24 324 296 HOH HOH . E 4 HOH A 25 325 200 HOH HOH . E 4 HOH A 26 326 203 HOH HOH . E 4 HOH A 27 327 303 HOH HOH . E 4 HOH A 28 328 267 HOH HOH . E 4 HOH A 29 329 211 HOH HOH . E 4 HOH A 30 330 216 HOH HOH . E 4 HOH A 31 331 12 HOH HOH . E 4 HOH A 32 332 236 HOH HOH . E 4 HOH A 33 333 220 HOH HOH . E 4 HOH A 34 334 204 HOH HOH . E 4 HOH A 35 335 245 HOH HOH . E 4 HOH A 36 336 238 HOH HOH . E 4 HOH A 37 337 209 HOH HOH . E 4 HOH A 38 338 223 HOH HOH . E 4 HOH A 39 339 334 HOH HOH . E 4 HOH A 40 340 294 HOH HOH . E 4 HOH A 41 341 232 HOH HOH . E 4 HOH A 42 342 28 HOH HOH . E 4 HOH A 43 343 240 HOH HOH . E 4 HOH A 44 344 201 HOH HOH . E 4 HOH A 45 345 227 HOH HOH . E 4 HOH A 46 346 255 HOH HOH . E 4 HOH A 47 347 218 HOH HOH . E 4 HOH A 48 348 226 HOH HOH . E 4 HOH A 49 349 229 HOH HOH . E 4 HOH A 50 350 246 HOH HOH . E 4 HOH A 51 351 202 HOH HOH . E 4 HOH A 52 352 239 HOH HOH . E 4 HOH A 53 353 215 HOH HOH . E 4 HOH A 54 354 228 HOH HOH . E 4 HOH A 55 355 348 HOH HOH . E 4 HOH A 56 356 312 HOH HOH . E 4 HOH A 57 357 248 HOH HOH . E 4 HOH A 58 358 222 HOH HOH . E 4 HOH A 59 359 206 HOH HOH . E 4 HOH A 60 360 233 HOH HOH . E 4 HOH A 61 361 235 HOH HOH . E 4 HOH A 62 362 327 HOH HOH . E 4 HOH A 63 363 338 HOH HOH . E 4 HOH A 64 364 283 HOH HOH . E 4 HOH A 65 365 23 HOH HOH . E 4 HOH A 66 366 251 HOH HOH . E 4 HOH A 67 367 207 HOH HOH . E 4 HOH A 68 368 345 HOH HOH . E 4 HOH A 69 369 274 HOH HOH . E 4 HOH A 70 370 321 HOH HOH . E 4 HOH A 71 371 15 HOH HOH . E 4 HOH A 72 372 254 HOH HOH . E 4 HOH A 73 373 31 HOH HOH . E 4 HOH A 74 374 284 HOH HOH . E 4 HOH A 75 375 304 HOH HOH . E 4 HOH A 76 376 270 HOH HOH . E 4 HOH A 77 377 307 HOH HOH . E 4 HOH A 78 378 329 HOH HOH . E 4 HOH A 79 379 297 HOH HOH . E 4 HOH A 80 380 346 HOH HOH . E 4 HOH A 81 381 225 HOH HOH . E 4 HOH A 82 382 298 HOH HOH . E 4 HOH A 83 383 289 HOH HOH . E 4 HOH A 84 384 323 HOH HOH . E 4 HOH A 85 385 221 HOH HOH . E 4 HOH A 86 386 13 HOH HOH . E 4 HOH A 87 387 250 HOH HOH . E 4 HOH A 88 388 308 HOH HOH . E 4 HOH A 89 389 290 HOH HOH . E 4 HOH A 90 390 305 HOH HOH . E 4 HOH A 91 391 279 HOH HOH . E 4 HOH A 92 392 333 HOH HOH . E 4 HOH A 93 393 205 HOH HOH . E 4 HOH A 94 394 266 HOH HOH . E 4 HOH A 95 395 224 HOH HOH . E 4 HOH A 96 396 243 HOH HOH . E 4 HOH A 97 397 242 HOH HOH . E 4 HOH A 98 398 302 HOH HOH . E 4 HOH A 99 399 217 HOH HOH . E 4 HOH A 100 400 280 HOH HOH . E 4 HOH A 101 401 21 HOH HOH . E 4 HOH A 102 402 212 HOH HOH . E 4 HOH A 103 403 277 HOH HOH . E 4 HOH A 104 404 25 HOH HOH . E 4 HOH A 105 405 219 HOH HOH . E 4 HOH A 106 406 285 HOH HOH . E 4 HOH A 107 407 282 HOH HOH . E 4 HOH A 108 408 234 HOH HOH . E 4 HOH A 109 409 314 HOH HOH . E 4 HOH A 110 410 14 HOH HOH . E 4 HOH A 111 411 337 HOH HOH . E 4 HOH A 112 412 22 HOH HOH . E 4 HOH A 113 413 258 HOH HOH . E 4 HOH A 114 414 16 HOH HOH . E 4 HOH A 115 415 253 HOH HOH . E 4 HOH A 116 416 2 HOH HOH . E 4 HOH A 117 417 347 HOH HOH . E 4 HOH A 118 418 316 HOH HOH . E 4 HOH A 119 419 311 HOH HOH . E 4 HOH A 120 420 256 HOH HOH . E 4 HOH A 121 421 319 HOH HOH . E 4 HOH A 122 422 231 HOH HOH . E 4 HOH A 123 423 20 HOH HOH . E 4 HOH A 124 424 332 HOH HOH . E 4 HOH A 125 425 32 HOH HOH . E 4 HOH A 126 426 335 HOH HOH . E 4 HOH A 127 427 299 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 S7J . . . D 3 40.163 4.264 73.416 0.32 21.08 ? N1 S7J 203 A 1 HETATM 2 C C4 S7J . . . D 3 37.759 4.55 74.881 0.32 24.56 ? C4 S7J 203 A 1 HETATM 3 C C5 S7J . . . D 3 39.132 5.588 71.653 0.32 20.93 ? C5 S7J 203 A 1 HETATM 4 N N S7J . . . D 3 39.504 2.241 77.082 0.32 27.8 ? N S7J 203 A 1 HETATM 5 C C S7J . . . D 3 38.805 3.389 76.829 0.32 27.36 ? C S7J 203 A 1 HETATM 6 O O S7J . . . D 3 38.194 3.996 77.72 0.32 30.38 ? O S7J 203 A 1 HETATM 7 C C1 S7J . . . D 3 38.84 3.877 75.437 0.32 25.26 ? C1 S7J 203 A 1 HETATM 8 C C2 S7J . . . D 3 40.037 3.733 74.663 0.32 24.08 ? C2 S7J 203 A 1 HETATM 9 C C3 S7J . . . D 3 39.044 4.923 73.008 0.32 21.19 ? C3 S7J 203 A 1 HETATM 10 F F S7J . . . D 3 37.964 5.642 71.034 0.32 21.48 ? F S7J 203 A 1 HETATM 11 F F1 S7J . . . D 3 39.902 4.976 70.774 0.32 20.14 ? F1 S7J 203 A 1 HETATM 12 F F2 S7J . . . D 3 39.662 6.806 71.79 0.32 21.67 ? F2 S7J 203 A 1 HETATM 13 N N2 S7J . . . D 3 37.848 5.098 73.637 0.32 23.74 ? N2 S7J 203 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #