data_5R8G # _model_server_result.job_id A6ZB6SFTJHYotxyDSqPs7A _model_server_result.datetime_utc '2024-10-11 02:18:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5R8G # _exptl.entry_id 5R8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.269 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-4-(phenylmethyl)morpholin-2-yl]methanol' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R8G _cell.length_a 54.82 _cell.length_b 54.82 _cell.length_c 75.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H17 N O2' _chem_comp.formula_weight 207.269 _chem_comp.id S7V _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-4-(phenylmethyl)morpholin-2-yl]methanol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 S7V doub 277 n y C8 C9 S7V sing 278 n y C7 C6 S7V sing 279 n y C9 C4 S7V doub 280 n y C6 C5 S7V doub 281 n y C11 O1 S7V sing 282 n n C11 C10 S7V sing 283 n n O1 C1 S7V sing 284 n n C4 C5 S7V sing 285 n y C4 C3 S7V sing 286 n n N C10 S7V sing 287 n n N C3 S7V sing 288 n n N C2 S7V sing 289 n n C2 C1 S7V sing 290 n n C1 C S7V sing 291 n n C O S7V sing 292 n n C5 H1 S7V sing 293 n n C6 H2 S7V sing 294 n n C7 H3 S7V sing 295 n n C8 H4 S7V sing 296 n n C10 H5 S7V sing 297 n n C10 H6 S7V sing 298 n n C H8 S7V sing 299 n n C H9 S7V sing 300 n n O H10 S7V sing 301 n n C1 H11 S7V sing 302 n n C11 H12 S7V sing 303 n n C11 H13 S7V sing 304 n n C2 H14 S7V sing 305 n n C2 H15 S7V sing 306 n n C3 H16 S7V sing 307 n n C3 H17 S7V sing 308 n n C9 H18 S7V sing 309 n n # _atom_sites.entry_id 5R8G _atom_sites.fract_transf_matrix[1][1] 0.018242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 160 SO4 SO4 . C 2 SO4 A 1 202 161 SO4 SO4 . D 3 S7V A 1 203 401 S7V LIG . E 4 HOH A 1 301 271 HOH HOH . E 4 HOH A 2 302 257 HOH HOH . E 4 HOH A 3 303 239 HOH HOH . E 4 HOH A 4 304 276 HOH HOH . E 4 HOH A 5 305 241 HOH HOH . E 4 HOH A 6 306 320 HOH HOH . E 4 HOH A 7 307 18 HOH HOH . E 4 HOH A 8 308 29 HOH HOH . E 4 HOH A 9 309 3 HOH HOH . E 4 HOH A 10 310 322 HOH HOH . E 4 HOH A 11 311 247 HOH HOH . E 4 HOH A 12 312 243 HOH HOH . E 4 HOH A 13 313 214 HOH HOH . E 4 HOH A 14 314 326 HOH HOH . E 4 HOH A 15 315 287 HOH HOH . E 4 HOH A 16 316 213 HOH HOH . E 4 HOH A 17 317 325 HOH HOH . E 4 HOH A 18 318 262 HOH HOH . E 4 HOH A 19 319 211 HOH HOH . E 4 HOH A 20 320 208 HOH HOH . E 4 HOH A 21 321 200 HOH HOH . E 4 HOH A 22 322 19 HOH HOH . E 4 HOH A 23 323 203 HOH HOH . E 4 HOH A 24 324 246 HOH HOH . E 4 HOH A 25 325 294 HOH HOH . E 4 HOH A 26 326 238 HOH HOH . E 4 HOH A 27 327 237 HOH HOH . E 4 HOH A 28 328 204 HOH HOH . E 4 HOH A 29 329 34 HOH HOH . E 4 HOH A 30 330 267 HOH HOH . E 4 HOH A 31 331 201 HOH HOH . E 4 HOH A 32 332 334 HOH HOH . E 4 HOH A 33 333 216 HOH HOH . E 4 HOH A 34 334 209 HOH HOH . E 4 HOH A 35 335 220 HOH HOH . E 4 HOH A 36 336 343 HOH HOH . E 4 HOH A 37 337 255 HOH HOH . E 4 HOH A 38 338 300 HOH HOH . E 4 HOH A 39 339 251 HOH HOH . E 4 HOH A 40 340 240 HOH HOH . E 4 HOH A 41 341 28 HOH HOH . E 4 HOH A 42 342 232 HOH HOH . E 4 HOH A 43 343 218 HOH HOH . E 4 HOH A 44 344 226 HOH HOH . E 4 HOH A 45 345 206 HOH HOH . E 4 HOH A 46 346 229 HOH HOH . E 4 HOH A 47 347 327 HOH HOH . E 4 HOH A 48 348 331 HOH HOH . E 4 HOH A 49 349 223 HOH HOH . E 4 HOH A 50 350 235 HOH HOH . E 4 HOH A 51 351 269 HOH HOH . E 4 HOH A 52 352 248 HOH HOH . E 4 HOH A 53 353 244 HOH HOH . E 4 HOH A 54 354 274 HOH HOH . E 4 HOH A 55 355 202 HOH HOH . E 4 HOH A 56 356 215 HOH HOH . E 4 HOH A 57 357 227 HOH HOH . E 4 HOH A 58 358 228 HOH HOH . E 4 HOH A 59 359 2 HOH HOH . E 4 HOH A 60 360 36 HOH HOH . E 4 HOH A 61 361 275 HOH HOH . E 4 HOH A 62 362 296 HOH HOH . E 4 HOH A 63 363 23 HOH HOH . E 4 HOH A 64 364 283 HOH HOH . E 4 HOH A 65 365 207 HOH HOH . E 4 HOH A 66 366 323 HOH HOH . E 4 HOH A 67 367 346 HOH HOH . E 4 HOH A 68 368 321 HOH HOH . E 4 HOH A 69 369 222 HOH HOH . E 4 HOH A 70 370 245 HOH HOH . E 4 HOH A 71 371 21 HOH HOH . E 4 HOH A 72 372 254 HOH HOH . E 4 HOH A 73 373 250 HOH HOH . E 4 HOH A 74 374 298 HOH HOH . E 4 HOH A 75 375 338 HOH HOH . E 4 HOH A 76 376 15 HOH HOH . E 4 HOH A 77 377 270 HOH HOH . E 4 HOH A 78 378 233 HOH HOH . E 4 HOH A 79 379 348 HOH HOH . E 4 HOH A 80 380 305 HOH HOH . E 4 HOH A 81 381 225 HOH HOH . E 4 HOH A 82 382 205 HOH HOH . E 4 HOH A 83 383 221 HOH HOH . E 4 HOH A 84 384 308 HOH HOH . E 4 HOH A 85 385 317 HOH HOH . E 4 HOH A 86 386 284 HOH HOH . E 4 HOH A 87 387 304 HOH HOH . E 4 HOH A 88 388 290 HOH HOH . E 4 HOH A 89 389 279 HOH HOH . E 4 HOH A 90 390 13 HOH HOH . E 4 HOH A 91 391 224 HOH HOH . E 4 HOH A 92 392 266 HOH HOH . E 4 HOH A 93 393 217 HOH HOH . E 4 HOH A 94 394 210 HOH HOH . E 4 HOH A 95 395 212 HOH HOH . E 4 HOH A 96 396 242 HOH HOH . E 4 HOH A 97 397 345 HOH HOH . E 4 HOH A 98 398 252 HOH HOH . E 4 HOH A 99 399 285 HOH HOH . E 4 HOH A 100 400 280 HOH HOH . E 4 HOH A 101 401 219 HOH HOH . E 4 HOH A 102 402 312 HOH HOH . E 4 HOH A 103 403 282 HOH HOH . E 4 HOH A 104 404 289 HOH HOH . E 4 HOH A 105 405 25 HOH HOH . E 4 HOH A 106 406 277 HOH HOH . E 4 HOH A 107 407 314 HOH HOH . E 4 HOH A 108 408 302 HOH HOH . E 4 HOH A 109 409 14 HOH HOH . E 4 HOH A 110 410 337 HOH HOH . E 4 HOH A 111 411 16 HOH HOH . E 4 HOH A 112 412 268 HOH HOH . E 4 HOH A 113 413 253 HOH HOH . E 4 HOH A 114 414 22 HOH HOH . E 4 HOH A 115 415 258 HOH HOH . E 4 HOH A 116 416 27 HOH HOH . E 4 HOH A 117 417 35 HOH HOH . E 4 HOH A 118 418 30 HOH HOH . E 4 HOH A 119 419 347 HOH HOH . E 4 HOH A 120 420 319 HOH HOH . E 4 HOH A 121 421 311 HOH HOH . E 4 HOH A 122 422 231 HOH HOH . E 4 HOH A 123 423 310 HOH HOH . E 4 HOH A 124 424 32 HOH HOH . E 4 HOH A 125 425 26 HOH HOH . E 4 HOH A 126 426 291 HOH HOH . E 4 HOH A 127 427 260 HOH HOH . E 4 HOH A 128 428 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 S7V . . . D 3 49.11 6.589 62.938 0.38 27.65 ? C4 S7V 203 A 1 HETATM 2 C C5 S7V . . . D 3 47.885 5.961 63.185 0.38 28.09 ? C5 S7V 203 A 1 HETATM 3 C C6 S7V . . . D 3 46.751 6.272 62.417 0.38 27.51 ? C6 S7V 203 A 1 HETATM 4 C C7 S7V . . . D 3 46.821 7.207 61.385 0.38 25.79 ? C7 S7V 203 A 1 HETATM 5 C C8 S7V . . . D 3 48.039 7.82 61.119 0.38 25.23 ? C8 S7V 203 A 1 HETATM 6 C C10 S7V . . . D 3 50.462 3.832 63.366 0.38 32.83 ? C10 S7V 203 A 1 HETATM 7 N N S7V . . . D 3 51.154 5.163 63.26 0.38 31.48 ? N S7V 203 A 1 HETATM 8 C C S7V . . . D 3 54.552 3.537 64.183 0.38 35.85 ? C S7V 203 A 1 HETATM 9 O O S7V . . . D 3 55.224 4.747 64.369 0.38 37.8 ? O S7V 203 A 1 HETATM 10 C C1 S7V . . . D 3 52.995 3.654 64.092 0.38 34.79 ? C1 S7V 203 A 1 HETATM 11 C C11 S7V . . . D 3 51.321 2.771 62.654 0.38 34.94 ? C11 S7V 203 A 1 HETATM 12 C C2 S7V . . . D 3 52.494 5.126 63.949 0.38 31.71 ? C2 S7V 203 A 1 HETATM 13 C C3 S7V . . . D 3 50.32 6.309 63.812 0.38 29.57 ? C3 S7V 203 A 1 HETATM 14 C C9 S7V . . . D 3 49.187 7.517 61.894 0.38 27.58 ? C9 S7V 203 A 1 HETATM 15 O O1 S7V . . . D 3 52.697 2.953 62.912 0.38 35.39 ? O1 S7V 203 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #