data_5R8K # _model_server_result.job_id hl5fXnYrlEsUz5HKnpZJRg _model_server_result.datetime_utc '2024-11-14 19:05:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5R8K # _exptl.entry_id 5R8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2~{R},5~{S})-2,5-dimethylmorpholin-4-yl]-~{N}-ethyl-ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R8K _cell.length_a 54.71 _cell.length_b 54.71 _cell.length_c 75.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H20 N2 O2' _chem_comp.formula_weight 200.278 _chem_comp.id S8D _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2~{R},5~{S})-2,5-dimethylmorpholin-4-yl]-~{N}-ethyl-ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 S8D sing 277 n n C1 N S8D sing 278 n n C5 C6 S8D sing 279 n n C5 O1 S8D sing 280 n n C5 C4 S8D sing 281 n n C7 O1 S8D sing 282 n n C7 C8 S8D sing 283 n n N1 C4 S8D sing 284 n n N1 C8 S8D sing 285 n n N1 C3 S8D sing 286 n n N C2 S8D sing 287 n n C9 C8 S8D sing 288 n n C3 C2 S8D sing 289 n n C2 O S8D doub 290 n n C4 H2 S8D sing 291 n n C4 H3 S8D sing 292 n n C5 H4 S8D sing 293 n n C6 H5 S8D sing 294 n n C6 H6 S8D sing 295 n n C6 H7 S8D sing 296 n n C7 H8 S8D sing 297 n n C7 H9 S8D sing 298 n n C8 H10 S8D sing 299 n n N H11 S8D sing 300 n n C H12 S8D sing 301 n n C H13 S8D sing 302 n n C H14 S8D sing 303 n n C1 H15 S8D sing 304 n n C1 H16 S8D sing 305 n n C3 H17 S8D sing 306 n n C3 H18 S8D sing 307 n n C9 H19 S8D sing 308 n n C9 H20 S8D sing 309 n n C9 H21 S8D sing 310 n n # _atom_sites.entry_id 5R8K _atom_sites.fract_transf_matrix[1][1] 0.018278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 160 SO4 SO4 . C 2 SO4 A 1 202 161 SO4 SO4 . D 3 S8D A 1 203 401 S8D LIG . E 4 HOH A 1 301 300 HOH HOH . E 4 HOH A 2 302 17 HOH HOH . E 4 HOH A 3 303 214 HOH HOH . E 4 HOH A 4 304 21 HOH HOH . E 4 HOH A 5 305 326 HOH HOH . E 4 HOH A 6 306 29 HOH HOH . E 4 HOH A 7 307 247 HOH HOH . E 4 HOH A 8 308 216 HOH HOH . E 4 HOH A 9 309 271 HOH HOH . E 4 HOH A 10 310 276 HOH HOH . E 4 HOH A 11 311 262 HOH HOH . E 4 HOH A 12 312 303 HOH HOH . E 4 HOH A 13 313 325 HOH HOH . E 4 HOH A 14 314 240 HOH HOH . E 4 HOH A 15 315 267 HOH HOH . E 4 HOH A 16 316 213 HOH HOH . E 4 HOH A 17 317 227 HOH HOH . E 4 HOH A 18 318 200 HOH HOH . E 4 HOH A 19 319 343 HOH HOH . E 4 HOH A 20 320 294 HOH HOH . E 4 HOH A 21 321 19 HOH HOH . E 4 HOH A 22 322 220 HOH HOH . E 4 HOH A 23 323 287 HOH HOH . E 4 HOH A 24 324 257 HOH HOH . E 4 HOH A 25 325 322 HOH HOH . E 4 HOH A 26 326 211 HOH HOH . E 4 HOH A 27 327 203 HOH HOH . E 4 HOH A 28 328 208 HOH HOH . E 4 HOH A 29 329 209 HOH HOH . E 4 HOH A 30 330 232 HOH HOH . E 4 HOH A 31 331 226 HOH HOH . E 4 HOH A 32 332 34 HOH HOH . E 4 HOH A 33 333 28 HOH HOH . E 4 HOH A 34 334 244 HOH HOH . E 4 HOH A 35 335 201 HOH HOH . E 4 HOH A 36 336 314 HOH HOH . E 4 HOH A 37 337 334 HOH HOH . E 4 HOH A 38 338 204 HOH HOH . E 4 HOH A 39 339 18 HOH HOH . E 4 HOH A 40 340 246 HOH HOH . E 4 HOH A 41 341 218 HOH HOH . E 4 HOH A 42 342 238 HOH HOH . E 4 HOH A 43 343 236 HOH HOH . E 4 HOH A 44 344 327 HOH HOH . E 4 HOH A 45 345 223 HOH HOH . E 4 HOH A 46 346 206 HOH HOH . E 4 HOH A 47 347 27 HOH HOH . E 4 HOH A 48 348 229 HOH HOH . E 4 HOH A 49 349 239 HOH HOH . E 4 HOH A 50 350 255 HOH HOH . E 4 HOH A 51 351 202 HOH HOH . E 4 HOH A 52 352 323 HOH HOH . E 4 HOH A 53 353 228 HOH HOH . E 4 HOH A 54 354 245 HOH HOH . E 4 HOH A 55 355 269 HOH HOH . E 4 HOH A 56 356 283 HOH HOH . E 4 HOH A 57 357 235 HOH HOH . E 4 HOH A 58 358 248 HOH HOH . E 4 HOH A 59 359 215 HOH HOH . E 4 HOH A 60 360 321 HOH HOH . E 4 HOH A 61 361 210 HOH HOH . E 4 HOH A 62 362 346 HOH HOH . E 4 HOH A 63 363 312 HOH HOH . E 4 HOH A 64 364 23 HOH HOH . E 4 HOH A 65 365 251 HOH HOH . E 4 HOH A 66 366 207 HOH HOH . E 4 HOH A 67 367 254 HOH HOH . E 4 HOH A 68 368 348 HOH HOH . E 4 HOH A 69 369 304 HOH HOH . E 4 HOH A 70 370 225 HOH HOH . E 4 HOH A 71 371 222 HOH HOH . E 4 HOH A 72 372 331 HOH HOH . E 4 HOH A 73 373 289 HOH HOH . E 4 HOH A 74 374 284 HOH HOH . E 4 HOH A 75 375 250 HOH HOH . E 4 HOH A 76 376 298 HOH HOH . E 4 HOH A 77 377 205 HOH HOH . E 4 HOH A 78 378 221 HOH HOH . E 4 HOH A 79 379 290 HOH HOH . E 4 HOH A 80 380 302 HOH HOH . E 4 HOH A 81 381 345 HOH HOH . E 4 HOH A 82 382 305 HOH HOH . E 4 HOH A 83 383 212 HOH HOH . E 4 HOH A 84 384 270 HOH HOH . E 4 HOH A 85 385 243 HOH HOH . E 4 HOH A 86 386 12 HOH HOH . E 4 HOH A 87 387 224 HOH HOH . E 4 HOH A 88 388 242 HOH HOH . E 4 HOH A 89 389 279 HOH HOH . E 4 HOH A 90 390 280 HOH HOH . E 4 HOH A 91 391 317 HOH HOH . E 4 HOH A 92 392 217 HOH HOH . E 4 HOH A 93 393 35 HOH HOH . E 4 HOH A 94 394 266 HOH HOH . E 4 HOH A 95 395 285 HOH HOH . E 4 HOH A 96 396 219 HOH HOH . E 4 HOH A 97 397 264 HOH HOH . E 4 HOH A 98 398 31 HOH HOH . E 4 HOH A 99 399 277 HOH HOH . E 4 HOH A 100 400 268 HOH HOH . E 4 HOH A 101 401 282 HOH HOH . E 4 HOH A 102 402 234 HOH HOH . E 4 HOH A 103 403 252 HOH HOH . E 4 HOH A 104 404 14 HOH HOH . E 4 HOH A 105 405 22 HOH HOH . E 4 HOH A 106 406 258 HOH HOH . E 4 HOH A 107 407 253 HOH HOH . E 4 HOH A 108 408 16 HOH HOH . E 4 HOH A 109 409 2 HOH HOH . E 4 HOH A 110 410 256 HOH HOH . E 4 HOH A 111 411 347 HOH HOH . E 4 HOH A 112 412 311 HOH HOH . E 4 HOH A 113 413 11 HOH HOH . E 4 HOH A 114 414 231 HOH HOH . E 4 HOH A 115 415 310 HOH HOH . E 4 HOH A 116 416 337 HOH HOH . E 4 HOH A 117 417 291 HOH HOH . E 4 HOH A 118 418 340 HOH HOH . E 4 HOH A 119 419 32 HOH HOH . E 4 HOH A 120 420 26 HOH HOH . E 4 HOH A 121 421 260 HOH HOH . E 4 HOH A 122 422 335 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 S8D . . . D 3 49.754 5.475 62.615 0.37 29.65 ? N1 S8D 203 A 1 HETATM 2 C C4 S8D . . . D 3 48.236 5.582 62.693 0.37 29.2 ? C4 S8D 203 A 1 HETATM 3 C C5 S8D . . . D 3 47.726 6.868 61.988 0.37 28.48 ? C5 S8D 203 A 1 HETATM 4 C C6 S8D . . . D 3 46.235 7.125 62.166 0.37 28.94 ? C6 S8D 203 A 1 HETATM 5 C C7 S8D . . . D 3 49.734 7.994 62.371 0.37 27.75 ? C7 S8D 203 A 1 HETATM 6 C C8 S8D . . . D 3 50.393 6.779 63.04 0.37 28.66 ? C8 S8D 203 A 1 HETATM 7 N N S8D . . . D 3 49.291 2.339 64.283 0.37 36.48 ? N S8D 203 A 1 HETATM 8 C C S8D . . . D 3 48.813 0.439 65.71 0.37 34.11 ? C S8D 203 A 1 HETATM 9 O O S8D . . . D 3 49.338 2.686 61.989 0.37 36.75 ? O S8D 203 A 1 HETATM 10 C C1 S8D . . . D 3 48.586 1.071 64.333 0.37 35.83 ? C1 S8D 203 A 1 HETATM 11 C C2 S8D . . . D 3 49.622 3.03 63.136 0.37 34.98 ? C2 S8D 203 A 1 HETATM 12 C C3 S8D . . . D 3 50.386 4.336 63.39 0.37 32.48 ? C3 S8D 203 A 1 HETATM 13 C C9 S8D . . . D 3 51.893 6.791 62.691 0.37 29.38 ? C9 S8D 203 A 1 HETATM 14 O O1 S8D . . . D 3 48.353 7.952 62.624 0.37 27.17 ? O1 S8D 203 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #