data_5R8L # _model_server_result.job_id 2p_Gi7Nn2H-VWgViD3499Q _model_server_result.datetime_utc '2025-01-14 04:18:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5R8L # _exptl.entry_id 5R8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.268 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(1S)-1-aminoethyl]phenyl}cyclopropanecarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R8L _cell.length_a 54.63 _cell.length_b 54.63 _cell.length_c 75.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H16 N2 O' _chem_comp.formula_weight 204.268 _chem_comp.id NY4 _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(1S)-1-aminoethyl]phenyl}cyclopropanecarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 NY4 sing 237 n n C9 C10 NY4 sing 238 n n C8 C10 NY4 sing 239 n n C8 C7 NY4 sing 240 n n C7 N2 NY4 sing 241 n n C7 O1 NY4 doub 242 n n N2 C6 NY4 sing 243 n n C6 C11 NY4 doub 244 n y C6 C5 NY4 sing 245 n y C11 C12 NY4 sing 246 n y C5 C4 NY4 doub 247 n y C12 C3 NY4 doub 248 n y C4 C3 NY4 sing 249 n y C3 C2 NY4 sing 250 n n C2 N1 NY4 sing 251 n n C2 C1 NY4 sing 252 n n N1 H1 NY4 sing 253 n n N1 H2 NY4 sing 254 n n C4 H4 NY4 sing 255 n n C5 H5 NY4 sing 256 n n C8 H6 NY4 sing 257 n n C10 H7 NY4 sing 258 n n C10 H8 NY4 sing 259 n n C1 H9 NY4 sing 260 n n C1 H10 NY4 sing 261 n n C1 H11 NY4 sing 262 n n C11 H12 NY4 sing 263 n n C12 H13 NY4 sing 264 n n C2 H14 NY4 sing 265 n n C9 H15 NY4 sing 266 n n C9 H16 NY4 sing 267 n n N2 H17 NY4 sing 268 n n # _atom_sites.entry_id 5R8L _atom_sites.fract_transf_matrix[1][1] 0.018305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 160 SO4 SO4 . C 2 SO4 A 1 202 161 SO4 SO4 . D 3 NY4 A 1 203 401 NY4 LIG . E 4 HOH A 1 301 326 HOH HOH . E 4 HOH A 2 302 29 HOH HOH . E 4 HOH A 3 303 271 HOH HOH . E 4 HOH A 4 304 276 HOH HOH . E 4 HOH A 5 305 216 HOH HOH . E 4 HOH A 6 306 239 HOH HOH . E 4 HOH A 7 307 270 HOH HOH . E 4 HOH A 8 308 227 HOH HOH . E 4 HOH A 9 309 232 HOH HOH . E 4 HOH A 10 310 237 HOH HOH . E 4 HOH A 11 311 257 HOH HOH . E 4 HOH A 12 312 233 HOH HOH . E 4 HOH A 13 313 262 HOH HOH . E 4 HOH A 14 314 322 HOH HOH . E 4 HOH A 15 315 240 HOH HOH . E 4 HOH A 16 316 267 HOH HOH . E 4 HOH A 17 317 213 HOH HOH . E 4 HOH A 18 318 203 HOH HOH . E 4 HOH A 19 319 21 HOH HOH . E 4 HOH A 20 320 200 HOH HOH . E 4 HOH A 21 321 214 HOH HOH . E 4 HOH A 22 322 325 HOH HOH . E 4 HOH A 23 323 208 HOH HOH . E 4 HOH A 24 324 229 HOH HOH . E 4 HOH A 25 325 238 HOH HOH . E 4 HOH A 26 326 226 HOH HOH . E 4 HOH A 27 327 5 HOH HOH . E 4 HOH A 28 328 211 HOH HOH . E 4 HOH A 29 329 334 HOH HOH . E 4 HOH A 30 330 201 HOH HOH . E 4 HOH A 31 331 294 HOH HOH . E 4 HOH A 32 332 204 HOH HOH . E 4 HOH A 33 333 247 HOH HOH . E 4 HOH A 34 334 223 HOH HOH . E 4 HOH A 35 335 202 HOH HOH . E 4 HOH A 36 336 222 HOH HOH . E 4 HOH A 37 337 245 HOH HOH . E 4 HOH A 38 338 251 HOH HOH . E 4 HOH A 39 339 23 HOH HOH . E 4 HOH A 40 340 346 HOH HOH . E 4 HOH A 41 341 303 HOH HOH . E 4 HOH A 42 342 19 HOH HOH . E 4 HOH A 43 343 218 HOH HOH . E 4 HOH A 44 344 248 HOH HOH . E 4 HOH A 45 345 228 HOH HOH . E 4 HOH A 46 346 327 HOH HOH . E 4 HOH A 47 347 235 HOH HOH . E 4 HOH A 48 348 209 HOH HOH . E 4 HOH A 49 349 206 HOH HOH . E 4 HOH A 50 350 274 HOH HOH . E 4 HOH A 51 351 321 HOH HOH . E 4 HOH A 52 352 225 HOH HOH . E 4 HOH A 53 353 207 HOH HOH . E 4 HOH A 54 354 348 HOH HOH . E 4 HOH A 55 355 243 HOH HOH . E 4 HOH A 56 356 254 HOH HOH . E 4 HOH A 57 357 255 HOH HOH . E 4 HOH A 58 358 304 HOH HOH . E 4 HOH A 59 359 290 HOH HOH . E 4 HOH A 60 360 242 HOH HOH . E 4 HOH A 61 361 212 HOH HOH . E 4 HOH A 62 362 268 HOH HOH . E 4 HOH A 63 363 246 HOH HOH . E 4 HOH A 64 364 323 HOH HOH . E 4 HOH A 65 365 302 HOH HOH . E 4 HOH A 66 366 266 HOH HOH . E 4 HOH A 67 367 298 HOH HOH . E 4 HOH A 68 368 284 HOH HOH . E 4 HOH A 69 369 250 HOH HOH . E 4 HOH A 70 370 224 HOH HOH . E 4 HOH A 71 371 221 HOH HOH . E 4 HOH A 72 372 279 HOH HOH . E 4 HOH A 73 373 205 HOH HOH . E 4 HOH A 74 374 277 HOH HOH . E 4 HOH A 75 375 317 HOH HOH . E 4 HOH A 76 376 338 HOH HOH . E 4 HOH A 77 377 305 HOH HOH . E 4 HOH A 78 378 219 HOH HOH . E 4 HOH A 79 379 217 HOH HOH . E 4 HOH A 80 380 285 HOH HOH . E 4 HOH A 81 381 253 HOH HOH . E 4 HOH A 82 382 282 HOH HOH . E 4 HOH A 83 383 35 HOH HOH . E 4 HOH A 84 384 22 HOH HOH . E 4 HOH A 85 385 258 HOH HOH . E 4 HOH A 86 386 14 HOH HOH . E 4 HOH A 87 387 27 HOH HOH . E 4 HOH A 88 388 311 HOH HOH . E 4 HOH A 89 389 340 HOH HOH . E 4 HOH A 90 390 256 HOH HOH . E 4 HOH A 91 391 347 HOH HOH . E 4 HOH A 92 392 231 HOH HOH . E 4 HOH A 93 393 319 HOH HOH . E 4 HOH A 94 394 335 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NY4 . . . D 3 38.987 5.862 73.747 0.37 26.83 ? N1 NY4 203 A 1 HETATM 2 C C4 NY4 . . . D 3 38.861 2.728 75.085 0.37 29.37 ? C4 NY4 203 A 1 HETATM 3 C C5 NY4 . . . D 3 39.399 1.822 75.947 0.37 31.7 ? C5 NY4 203 A 1 HETATM 4 C C6 NY4 . . . D 3 40.792 1.723 76.11 0.37 31.98 ? C6 NY4 203 A 1 HETATM 5 C C7 NY4 . . . D 3 40.777 -0.274 77.689 0.37 39.86 ? C7 NY4 203 A 1 HETATM 6 C C8 NY4 . . . D 3 41.672 -1.18 78.472 0.37 41.76 ? C8 NY4 203 A 1 HETATM 7 C C10 NY4 . . . D 3 41.011 -2.031 79.559 0.37 41.81 ? C10 NY4 203 A 1 HETATM 8 C C1 NY4 . . . D 3 39.573 4.496 71.954 0.37 28.01 ? C1 NY4 203 A 1 HETATM 9 C C11 NY4 . . . D 3 41.61 2.639 75.377 0.37 33.05 ? C11 NY4 203 A 1 HETATM 10 C C12 NY4 . . . D 3 40.998 3.566 74.504 0.37 26.54 ? C12 NY4 203 A 1 HETATM 11 C C2 NY4 . . . D 3 38.923 4.495 73.341 0.37 28.55 ? C2 NY4 203 A 1 HETATM 12 C C3 NY4 . . . D 3 39.628 3.587 74.341 0.37 28.69 ? C3 NY4 203 A 1 HETATM 13 C C9 NY4 . . . D 3 41.897 -0.865 79.938 0.37 42.63 ? C9 NY4 203 A 1 HETATM 14 N N2 NY4 . . . D 3 41.419 0.735 76.933 0.37 35.57 ? N2 NY4 203 A 1 HETATM 15 O O1 NY4 . . . D 3 39.567 -0.438 77.719 0.37 41.97 ? O1 NY4 203 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #