data_5R8M # _model_server_result.job_id RhavQylvAaAUVihJZKJIUA _model_server_result.datetime_utc '2024-11-22 17:29:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5R8M # _exptl.entry_id 5R8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 224.223 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3~{R})-3-azanylpiperidin-1-yl]-4,4,4-tris(fluoranyl)butan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R8M _cell.length_a 54.56 _cell.length_b 54.56 _cell.length_c 75.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H15 F3 N2 O' _chem_comp.formula_weight 224.223 _chem_comp.id S8G _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3~{R})-3-azanylpiperidin-1-yl]-4,4,4-tris(fluoranyl)butan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C8 S8G sing 277 n n F1 C8 S8G sing 278 n n C8 C7 S8G sing 279 n n C8 F2 S8G sing 280 n n C7 C6 S8G sing 281 n n C6 C5 S8G sing 282 n n O C5 S8G doub 283 n n C5 N1 S8G sing 284 n n N1 C3 S8G sing 285 n n N1 C4 S8G sing 286 n n C3 C2 S8G sing 287 n n C4 C S8G sing 288 n n C2 C1 S8G sing 289 n n C1 C S8G sing 290 n n C N S8G sing 291 n n C4 H1 S8G sing 292 n n C4 H2 S8G sing 293 n n C6 H3 S8G sing 294 n n C6 H4 S8G sing 295 n n C7 H5 S8G sing 296 n n C7 H6 S8G sing 297 n n N H7 S8G sing 298 n n N H8 S8G sing 299 n n C H10 S8G sing 300 n n C1 H11 S8G sing 301 n n C1 H12 S8G sing 302 n n C2 H13 S8G sing 303 n n C2 H14 S8G sing 304 n n C3 H15 S8G sing 305 n n C3 H16 S8G sing 306 n n # _atom_sites.entry_id 5R8M _atom_sites.fract_transf_matrix[1][1] 0.018328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 160 SO4 SO4 . C 2 SO4 A 1 202 161 SO4 SO4 . D 3 S8G A 1 203 401 S8G LIG . E 4 HOH A 1 301 296 HOH HOH . E 4 HOH A 2 302 17 HOH HOH . E 4 HOH A 3 303 29 HOH HOH . E 4 HOH A 4 304 271 HOH HOH . E 4 HOH A 5 305 324 HOH HOH . E 4 HOH A 6 306 268 HOH HOH . E 4 HOH A 7 307 35 HOH HOH . E 4 HOH A 8 308 34 HOH HOH . E 4 HOH A 9 309 326 HOH HOH . E 4 HOH A 10 310 243 HOH HOH . E 4 HOH A 11 311 292 HOH HOH . E 4 HOH A 12 312 325 HOH HOH . E 4 HOH A 13 313 300 HOH HOH . E 4 HOH A 14 314 247 HOH HOH . E 4 HOH A 15 315 213 HOH HOH . E 4 HOH A 16 316 336 HOH HOH . E 4 HOH A 17 317 203 HOH HOH . E 4 HOH A 18 318 257 HOH HOH . E 4 HOH A 19 319 322 HOH HOH . E 4 HOH A 20 320 214 HOH HOH . E 4 HOH A 21 321 241 HOH HOH . E 4 HOH A 22 322 208 HOH HOH . E 4 HOH A 23 323 18 HOH HOH . E 4 HOH A 24 324 216 HOH HOH . E 4 HOH A 25 325 200 HOH HOH . E 4 HOH A 26 326 204 HOH HOH . E 4 HOH A 27 327 262 HOH HOH . E 4 HOH A 28 328 338 HOH HOH . E 4 HOH A 29 329 19 HOH HOH . E 4 HOH A 30 330 276 HOH HOH . E 4 HOH A 31 331 287 HOH HOH . E 4 HOH A 32 332 267 HOH HOH . E 4 HOH A 33 333 211 HOH HOH . E 4 HOH A 34 334 294 HOH HOH . E 4 HOH A 35 335 238 HOH HOH . E 4 HOH A 36 336 218 HOH HOH . E 4 HOH A 37 337 28 HOH HOH . E 4 HOH A 38 338 235 HOH HOH . E 4 HOH A 39 339 303 HOH HOH . E 4 HOH A 40 340 232 HOH HOH . E 4 HOH A 41 341 334 HOH HOH . E 4 HOH A 42 342 251 HOH HOH . E 4 HOH A 43 343 202 HOH HOH . E 4 HOH A 44 344 226 HOH HOH . E 4 HOH A 45 345 220 HOH HOH . E 4 HOH A 46 346 222 HOH HOH . E 4 HOH A 47 347 13 HOH HOH . E 4 HOH A 48 348 236 HOH HOH . E 4 HOH A 49 349 255 HOH HOH . E 4 HOH A 50 350 209 HOH HOH . E 4 HOH A 51 351 223 HOH HOH . E 4 HOH A 52 352 12 HOH HOH . E 4 HOH A 53 353 244 HOH HOH . E 4 HOH A 54 354 201 HOH HOH . E 4 HOH A 55 355 246 HOH HOH . E 4 HOH A 56 356 240 HOH HOH . E 4 HOH A 57 357 312 HOH HOH . E 4 HOH A 58 358 281 HOH HOH . E 4 HOH A 59 359 269 HOH HOH . E 4 HOH A 60 360 227 HOH HOH . E 4 HOH A 61 361 15 HOH HOH . E 4 HOH A 62 362 206 HOH HOH . E 4 HOH A 63 363 228 HOH HOH . E 4 HOH A 64 364 23 HOH HOH . E 4 HOH A 65 365 248 HOH HOH . E 4 HOH A 66 366 233 HOH HOH . E 4 HOH A 67 367 229 HOH HOH . E 4 HOH A 68 368 346 HOH HOH . E 4 HOH A 69 369 221 HOH HOH . E 4 HOH A 70 370 215 HOH HOH . E 4 HOH A 71 371 348 HOH HOH . E 4 HOH A 72 372 239 HOH HOH . E 4 HOH A 73 373 327 HOH HOH . E 4 HOH A 74 374 289 HOH HOH . E 4 HOH A 75 375 207 HOH HOH . E 4 HOH A 76 376 308 HOH HOH . E 4 HOH A 77 377 254 HOH HOH . E 4 HOH A 78 378 274 HOH HOH . E 4 HOH A 79 379 304 HOH HOH . E 4 HOH A 80 380 270 HOH HOH . E 4 HOH A 81 381 259 HOH HOH . E 4 HOH A 82 382 321 HOH HOH . E 4 HOH A 83 383 333 HOH HOH . E 4 HOH A 84 384 284 HOH HOH . E 4 HOH A 85 385 265 HOH HOH . E 4 HOH A 86 386 245 HOH HOH . E 4 HOH A 87 387 225 HOH HOH . E 4 HOH A 88 388 205 HOH HOH . E 4 HOH A 89 389 307 HOH HOH . E 4 HOH A 90 390 31 HOH HOH . E 4 HOH A 91 391 297 HOH HOH . E 4 HOH A 92 392 345 HOH HOH . E 4 HOH A 93 393 323 HOH HOH . E 4 HOH A 94 394 250 HOH HOH . E 4 HOH A 95 395 279 HOH HOH . E 4 HOH A 96 396 298 HOH HOH . E 4 HOH A 97 397 234 HOH HOH . E 4 HOH A 98 398 290 HOH HOH . E 4 HOH A 99 399 280 HOH HOH . E 4 HOH A 100 400 224 HOH HOH . E 4 HOH A 101 401 266 HOH HOH . E 4 HOH A 102 402 217 HOH HOH . E 4 HOH A 103 403 277 HOH HOH . E 4 HOH A 104 404 305 HOH HOH . E 4 HOH A 105 405 25 HOH HOH . E 4 HOH A 106 406 242 HOH HOH . E 4 HOH A 107 407 212 HOH HOH . E 4 HOH A 108 408 317 HOH HOH . E 4 HOH A 109 409 21 HOH HOH . E 4 HOH A 110 410 219 HOH HOH . E 4 HOH A 111 411 302 HOH HOH . E 4 HOH A 112 412 283 HOH HOH . E 4 HOH A 113 413 285 HOH HOH . E 4 HOH A 114 414 282 HOH HOH . E 4 HOH A 115 415 272 HOH HOH . E 4 HOH A 116 416 16 HOH HOH . E 4 HOH A 117 417 14 HOH HOH . E 4 HOH A 118 418 22 HOH HOH . E 4 HOH A 119 419 258 HOH HOH . E 4 HOH A 120 420 263 HOH HOH . E 4 HOH A 121 421 337 HOH HOH . E 4 HOH A 122 422 253 HOH HOH . E 4 HOH A 123 423 311 HOH HOH . E 4 HOH A 124 424 8 HOH HOH . E 4 HOH A 125 425 2 HOH HOH . E 4 HOH A 126 426 347 HOH HOH . E 4 HOH A 127 427 256 HOH HOH . E 4 HOH A 128 428 316 HOH HOH . E 4 HOH A 129 429 330 HOH HOH . E 4 HOH A 130 430 11 HOH HOH . E 4 HOH A 131 431 20 HOH HOH . E 4 HOH A 132 432 231 HOH HOH . E 4 HOH A 133 433 310 HOH HOH . E 4 HOH A 134 434 332 HOH HOH . E 4 HOH A 135 435 32 HOH HOH . E 4 HOH A 136 436 260 HOH HOH . E 4 HOH A 137 437 291 HOH HOH . E 4 HOH A 138 438 299 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 S8G . . . D 3 39.927 1.415 75.652 0.34 30.02 ? N1 S8G 203 A 1 HETATM 2 C C4 S8G . . . D 3 40.996 0.657 76.357 0.34 28.54 ? C4 S8G 203 A 1 HETATM 3 C C5 S8G . . . D 3 40.295 2.461 74.784 0.34 27.91 ? C5 S8G 203 A 1 HETATM 4 C C6 S8G . . . D 3 39.242 3.246 74.023 0.34 25.61 ? C6 S8G 203 A 1 HETATM 5 C C7 S8G . . . D 3 39.934 4.496 73.528 0.34 25.23 ? C7 S8G 203 A 1 HETATM 6 C C8 S8G . . . D 3 38.891 5.389 72.832 0.34 24.22 ? C8 S8G 203 A 1 HETATM 7 N N S8G . . . D 3 41.768 -0.382 78.42 0.34 29.67 ? N S8G 203 A 1 HETATM 8 C C S8G . . . D 3 40.613 0.274 77.814 0.34 30.18 ? C S8G 203 A 1 HETATM 9 O O S8G . . . D 3 41.489 2.768 74.647 0.34 27.73 ? O S8G 203 A 1 HETATM 10 C C1 S8G . . . D 3 39.342 -0.58 77.702 0.34 30.27 ? C1 S8G 203 A 1 HETATM 11 C C2 S8G . . . D 3 38.217 0.333 77.228 0.34 30.82 ? C2 S8G 203 A 1 HETATM 12 C C3 S8G . . . D 3 38.519 0.93 75.826 0.34 30.83 ? C3 S8G 203 A 1 HETATM 13 F F S8G . . . D 3 38.313 4.726 71.787 0.34 23.83 ? F S8G 203 A 1 HETATM 14 F F1 S8G . . . D 3 39.424 6.526 72.361 0.34 26.82 ? F1 S8G 203 A 1 HETATM 15 F F2 S8G . . . D 3 37.851 5.753 73.592 0.34 25.15 ? F2 S8G 203 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #