data_5R8P # _model_server_result.job_id BiPmaSS6tckokEhmLtRyRA _model_server_result.datetime_utc '2024-11-24 20:47:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5R8P # _exptl.entry_id 5R8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 141.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[[(3~{S})-oxolan-3-yl]methyl]cyclopropanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R8P _cell.length_a 54.63 _cell.length_b 54.63 _cell.length_c 75.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H15 N O' _chem_comp.formula_weight 141.211 _chem_comp.id S8V _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[[(3~{S})-oxolan-3-yl]methyl]cyclopropanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C5 S8V sing 277 n n C6 O S8V sing 278 n n C5 C4 S8V sing 279 n n O C7 S8V sing 280 n n C4 C7 S8V sing 281 n n C4 C S8V sing 282 n n C N S8V sing 283 n n C3 C1 S8V sing 284 n n C3 C2 S8V sing 285 n n N C1 S8V sing 286 n n C1 C2 S8V sing 287 n n C4 H1 S8V sing 288 n n C5 H2 S8V sing 289 n n C6 H3 S8V sing 290 n n C7 H4 S8V sing 291 n n C7 H5 S8V sing 292 n n N H6 S8V sing 293 n n C H8 S8V sing 294 n n C H9 S8V sing 295 n n C1 H10 S8V sing 296 n n C2 H11 S8V sing 297 n n C2 H12 S8V sing 298 n n C3 H13 S8V sing 299 n n C3 H14 S8V sing 300 n n C5 H15 S8V sing 301 n n C6 H16 S8V sing 302 n n # _atom_sites.entry_id 5R8P _atom_sites.fract_transf_matrix[1][1] 0.018305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 160 SO4 SO4 . C 2 SO4 A 1 202 161 SO4 SO4 . D 3 S8V A 1 203 401 S8V LIG . E 4 HOH A 1 301 214 HOH HOH . E 4 HOH A 2 302 326 HOH HOH . E 4 HOH A 3 303 29 HOH HOH . E 4 HOH A 4 304 34 HOH HOH . E 4 HOH A 5 305 271 HOH HOH . E 4 HOH A 6 306 239 HOH HOH . E 4 HOH A 7 307 267 HOH HOH . E 4 HOH A 8 308 262 HOH HOH . E 4 HOH A 9 309 220 HOH HOH . E 4 HOH A 10 310 325 HOH HOH . E 4 HOH A 11 311 232 HOH HOH . E 4 HOH A 12 312 303 HOH HOH . E 4 HOH A 13 313 257 HOH HOH . E 4 HOH A 14 314 213 HOH HOH . E 4 HOH A 15 315 277 HOH HOH . E 4 HOH A 16 316 308 HOH HOH . E 4 HOH A 17 317 247 HOH HOH . E 4 HOH A 18 318 287 HOH HOH . E 4 HOH A 19 319 19 HOH HOH . E 4 HOH A 20 320 237 HOH HOH . E 4 HOH A 21 321 236 HOH HOH . E 4 HOH A 22 322 12 HOH HOH . E 4 HOH A 23 323 211 HOH HOH . E 4 HOH A 24 324 208 HOH HOH . E 4 HOH A 25 325 227 HOH HOH . E 4 HOH A 26 326 322 HOH HOH . E 4 HOH A 27 327 203 HOH HOH . E 4 HOH A 28 328 240 HOH HOH . E 4 HOH A 29 329 245 HOH HOH . E 4 HOH A 30 330 200 HOH HOH . E 4 HOH A 31 331 294 HOH HOH . E 4 HOH A 32 332 300 HOH HOH . E 4 HOH A 33 333 216 HOH HOH . E 4 HOH A 34 334 238 HOH HOH . E 4 HOH A 35 335 28 HOH HOH . E 4 HOH A 36 336 201 HOH HOH . E 4 HOH A 37 337 226 HOH HOH . E 4 HOH A 38 338 223 HOH HOH . E 4 HOH A 39 339 334 HOH HOH . E 4 HOH A 40 340 204 HOH HOH . E 4 HOH A 41 341 18 HOH HOH . E 4 HOH A 42 342 269 HOH HOH . E 4 HOH A 43 343 202 HOH HOH . E 4 HOH A 44 344 209 HOH HOH . E 4 HOH A 45 345 21 HOH HOH . E 4 HOH A 46 346 279 HOH HOH . E 4 HOH A 47 347 246 HOH HOH . E 4 HOH A 48 348 312 HOH HOH . E 4 HOH A 49 349 206 HOH HOH . E 4 HOH A 50 350 228 HOH HOH . E 4 HOH A 51 351 251 HOH HOH . E 4 HOH A 52 352 274 HOH HOH . E 4 HOH A 53 353 327 HOH HOH . E 4 HOH A 54 354 215 HOH HOH . E 4 HOH A 55 355 235 HOH HOH . E 4 HOH A 56 356 218 HOH HOH . E 4 HOH A 57 357 248 HOH HOH . E 4 HOH A 58 358 222 HOH HOH . E 4 HOH A 59 359 229 HOH HOH . E 4 HOH A 60 360 321 HOH HOH . E 4 HOH A 61 361 298 HOH HOH . E 4 HOH A 62 362 23 HOH HOH . E 4 HOH A 63 363 348 HOH HOH . E 4 HOH A 64 364 289 HOH HOH . E 4 HOH A 65 365 254 HOH HOH . E 4 HOH A 66 366 207 HOH HOH . E 4 HOH A 67 367 255 HOH HOH . E 4 HOH A 68 368 15 HOH HOH . E 4 HOH A 69 369 346 HOH HOH . E 4 HOH A 70 370 225 HOH HOH . E 4 HOH A 71 371 233 HOH HOH . E 4 HOH A 72 372 286 HOH HOH . E 4 HOH A 73 373 323 HOH HOH . E 4 HOH A 74 374 270 HOH HOH . E 4 HOH A 75 375 205 HOH HOH . E 4 HOH A 76 376 345 HOH HOH . E 4 HOH A 77 377 212 HOH HOH . E 4 HOH A 78 378 266 HOH HOH . E 4 HOH A 79 379 250 HOH HOH . E 4 HOH A 80 380 297 HOH HOH . E 4 HOH A 81 381 242 HOH HOH . E 4 HOH A 82 382 305 HOH HOH . E 4 HOH A 83 383 284 HOH HOH . E 4 HOH A 84 384 290 HOH HOH . E 4 HOH A 85 385 333 HOH HOH . E 4 HOH A 86 386 243 HOH HOH . E 4 HOH A 87 387 217 HOH HOH . E 4 HOH A 88 388 302 HOH HOH . E 4 HOH A 89 389 317 HOH HOH . E 4 HOH A 90 390 224 HOH HOH . E 4 HOH A 91 391 307 HOH HOH . E 4 HOH A 92 392 338 HOH HOH . E 4 HOH A 93 393 219 HOH HOH . E 4 HOH A 94 394 268 HOH HOH . E 4 HOH A 95 395 280 HOH HOH . E 4 HOH A 96 396 282 HOH HOH . E 4 HOH A 97 397 31 HOH HOH . E 4 HOH A 98 398 22 HOH HOH . E 4 HOH A 99 399 253 HOH HOH . E 4 HOH A 100 400 35 HOH HOH . E 4 HOH A 101 401 14 HOH HOH . E 4 HOH A 102 402 258 HOH HOH . E 4 HOH A 103 403 304 HOH HOH . E 4 HOH A 104 404 2 HOH HOH . E 4 HOH A 105 405 347 HOH HOH . E 4 HOH A 106 406 256 HOH HOH . E 4 HOH A 107 407 11 HOH HOH . E 4 HOH A 108 408 231 HOH HOH . E 4 HOH A 109 409 281 HOH HOH . E 4 HOH A 110 410 20 HOH HOH . E 4 HOH A 111 411 319 HOH HOH . E 4 HOH A 112 412 335 HOH HOH . E 4 HOH A 113 413 299 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 S8V . . . D 3 38.628 4.377 73.581 0.31 32.7 ? C4 S8V 203 A 1 HETATM 2 C C5 S8V . . . D 3 38.375 4.832 72.131 0.31 32.8 ? C5 S8V 203 A 1 HETATM 3 C C6 S8V . . . D 3 39.747 5.186 71.591 0.31 33.04 ? C6 S8V 203 A 1 HETATM 4 C C7 S8V . . . D 3 40.159 4.492 73.784 0.31 32.19 ? C7 S8V 203 A 1 HETATM 5 N N S8V . . . D 3 38.185 2.684 75.268 0.31 35.44 ? N S8V 203 A 1 HETATM 6 C C S8V . . . D 3 38.163 2.947 73.81 0.31 33.14 ? C S8V 203 A 1 HETATM 7 O O S8V . . . D 3 40.736 4.925 72.59 0.31 32.52 ? O S8V 203 A 1 HETATM 8 C C1 S8V . . . D 3 37.988 1.277 75.587 0.31 36.98 ? C1 S8V 203 A 1 HETATM 9 C C2 S8V . . . D 3 38.891 0.674 76.672 0.31 36.88 ? C2 S8V 203 A 1 HETATM 10 C C3 S8V . . . D 3 39.148 0.361 75.202 0.31 37.43 ? C3 S8V 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #