data_5R8Q # _model_server_result.job_id MRhct8VtfPXe561lz4pg6Q _model_server_result.datetime_utc '2024-11-22 06:43:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5R8Q # _exptl.entry_id 5R8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.245 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methyl-N-{[(2S)-oxolan-2-yl]methyl}-1H-pyrazole-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R8Q _cell.length_a 54.51 _cell.length_b 54.51 _cell.length_c 75.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N3 O2' _chem_comp.formula_weight 209.245 _chem_comp.id JGY _chem_comp.mon_nstd_flag . _chem_comp.name 1-methyl-N-{[(2S)-oxolan-2-yl]methyl}-1H-pyrazole-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C04 C03 JGY doub 173 n y C04 C05 JGY sing 174 n y C03 N02 JGY sing 175 n y O08 C07 JGY doub 176 n n C05 C07 JGY sing 177 n n C05 N06 JGY doub 178 n y N02 C01 JGY sing 179 n n N02 N06 JGY sing 180 n y C07 N09 JGY sing 181 n n N09 C10 JGY sing 182 n n C10 C11 JGY sing 183 n n C11 C12 JGY sing 184 n n C11 O15 JGY sing 185 n n C12 C13 JGY sing 186 n n O15 C14 JGY sing 187 n n C13 C14 JGY sing 188 n n C10 H101 JGY sing 189 n n C10 H102 JGY sing 190 n n C13 H131 JGY sing 191 n n C13 H132 JGY sing 192 n n C01 H013 JGY sing 193 n n C01 H011 JGY sing 194 n n C01 H012 JGY sing 195 n n C03 H031 JGY sing 196 n n C04 H041 JGY sing 197 n n N09 H091 JGY sing 198 n n C11 H111 JGY sing 199 n n C12 H122 JGY sing 200 n n C12 H121 JGY sing 201 n n C14 H142 JGY sing 202 n n C14 H141 JGY sing 203 n n # _atom_sites.entry_id 5R8Q _atom_sites.fract_transf_matrix[1][1] 0.018345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 160 SO4 SO4 . C 2 SO4 A 1 202 161 SO4 SO4 . D 3 JGY A 1 203 401 JGY LIG . E 4 HOH A 1 301 300 HOH HOH . E 4 HOH A 2 302 271 HOH HOH . E 4 HOH A 3 303 241 HOH HOH . E 4 HOH A 4 304 220 HOH HOH . E 4 HOH A 5 305 262 HOH HOH . E 4 HOH A 6 306 303 HOH HOH . E 4 HOH A 7 307 308 HOH HOH . E 4 HOH A 8 308 29 HOH HOH . E 4 HOH A 9 309 263 HOH HOH . E 4 HOH A 10 310 272 HOH HOH . E 4 HOH A 11 311 292 HOH HOH . E 4 HOH A 12 312 326 HOH HOH . E 4 HOH A 13 313 247 HOH HOH . E 4 HOH A 14 314 317 HOH HOH . E 4 HOH A 15 315 267 HOH HOH . E 4 HOH A 16 316 336 HOH HOH . E 4 HOH A 17 317 28 HOH HOH . E 4 HOH A 18 318 237 HOH HOH . E 4 HOH A 19 319 334 HOH HOH . E 4 HOH A 20 320 325 HOH HOH . E 4 HOH A 21 321 208 HOH HOH . E 4 HOH A 22 322 213 HOH HOH . E 4 HOH A 23 323 19 HOH HOH . E 4 HOH A 24 324 21 HOH HOH . E 4 HOH A 25 325 18 HOH HOH . E 4 HOH A 26 326 214 HOH HOH . E 4 HOH A 27 327 321 HOH HOH . E 4 HOH A 28 328 33 HOH HOH . E 4 HOH A 29 329 322 HOH HOH . E 4 HOH A 30 330 257 HOH HOH . E 4 HOH A 31 331 338 HOH HOH . E 4 HOH A 32 332 204 HOH HOH . E 4 HOH A 33 333 201 HOH HOH . E 4 HOH A 34 334 236 HOH HOH . E 4 HOH A 35 335 238 HOH HOH . E 4 HOH A 36 336 216 HOH HOH . E 4 HOH A 37 337 274 HOH HOH . E 4 HOH A 38 338 211 HOH HOH . E 4 HOH A 39 339 244 HOH HOH . E 4 HOH A 40 340 200 HOH HOH . E 4 HOH A 41 341 232 HOH HOH . E 4 HOH A 42 342 313 HOH HOH . E 4 HOH A 43 343 239 HOH HOH . E 4 HOH A 44 344 343 HOH HOH . E 4 HOH A 45 345 203 HOH HOH . E 4 HOH A 46 346 255 HOH HOH . E 4 HOH A 47 347 281 HOH HOH . E 4 HOH A 48 348 287 HOH HOH . E 4 HOH A 49 349 240 HOH HOH . E 4 HOH A 50 350 17 HOH HOH . E 4 HOH A 51 351 283 HOH HOH . E 4 HOH A 52 352 218 HOH HOH . E 4 HOH A 53 353 209 HOH HOH . E 4 HOH A 54 354 229 HOH HOH . E 4 HOH A 55 355 323 HOH HOH . E 4 HOH A 56 356 251 HOH HOH . E 4 HOH A 57 357 245 HOH HOH . E 4 HOH A 58 358 329 HOH HOH . E 4 HOH A 59 359 294 HOH HOH . E 4 HOH A 60 360 226 HOH HOH . E 4 HOH A 61 361 312 HOH HOH . E 4 HOH A 62 362 222 HOH HOH . E 4 HOH A 63 363 235 HOH HOH . E 4 HOH A 64 364 223 HOH HOH . E 4 HOH A 65 365 228 HOH HOH . E 4 HOH A 66 366 227 HOH HOH . E 4 HOH A 67 367 307 HOH HOH . E 4 HOH A 68 368 206 HOH HOH . E 4 HOH A 69 369 324 HOH HOH . E 4 HOH A 70 370 276 HOH HOH . E 4 HOH A 71 371 345 HOH HOH . E 4 HOH A 72 372 269 HOH HOH . E 4 HOH A 73 373 254 HOH HOH . E 4 HOH A 74 374 202 HOH HOH . E 4 HOH A 75 375 243 HOH HOH . E 4 HOH A 76 376 318 HOH HOH . E 4 HOH A 77 377 207 HOH HOH . E 4 HOH A 78 378 346 HOH HOH . E 4 HOH A 79 379 289 HOH HOH . E 4 HOH A 80 380 268 HOH HOH . E 4 HOH A 81 381 248 HOH HOH . E 4 HOH A 82 382 217 HOH HOH . E 4 HOH A 83 383 280 HOH HOH . E 4 HOH A 84 384 249 HOH HOH . E 4 HOH A 85 385 331 HOH HOH . E 4 HOH A 86 386 15 HOH HOH . E 4 HOH A 87 387 348 HOH HOH . E 4 HOH A 88 388 13 HOH HOH . E 4 HOH A 89 389 233 HOH HOH . E 4 HOH A 90 390 270 HOH HOH . E 4 HOH A 91 391 205 HOH HOH . E 4 HOH A 92 392 279 HOH HOH . E 4 HOH A 93 393 290 HOH HOH . E 4 HOH A 94 394 327 HOH HOH . E 4 HOH A 95 395 221 HOH HOH . E 4 HOH A 96 396 302 HOH HOH . E 4 HOH A 97 397 250 HOH HOH . E 4 HOH A 98 398 224 HOH HOH . E 4 HOH A 99 399 275 HOH HOH . E 4 HOH A 100 400 225 HOH HOH . E 4 HOH A 101 401 277 HOH HOH . E 4 HOH A 102 402 297 HOH HOH . E 4 HOH A 103 403 305 HOH HOH . E 4 HOH A 104 404 23 HOH HOH . E 4 HOH A 105 405 333 HOH HOH . E 4 HOH A 106 406 265 HOH HOH . E 4 HOH A 107 407 212 HOH HOH . E 4 HOH A 108 408 264 HOH HOH . E 4 HOH A 109 409 34 HOH HOH . E 4 HOH A 110 410 286 HOH HOH . E 4 HOH A 111 411 266 HOH HOH . E 4 HOH A 112 412 31 HOH HOH . E 4 HOH A 113 413 242 HOH HOH . E 4 HOH A 114 414 282 HOH HOH . E 4 HOH A 115 415 219 HOH HOH . E 4 HOH A 116 416 298 HOH HOH . E 4 HOH A 117 417 215 HOH HOH . E 4 HOH A 118 418 246 HOH HOH . E 4 HOH A 119 419 9 HOH HOH . E 4 HOH A 120 420 285 HOH HOH . E 4 HOH A 121 421 12 HOH HOH . E 4 HOH A 122 422 22 HOH HOH . E 4 HOH A 123 423 304 HOH HOH . E 4 HOH A 124 424 35 HOH HOH . E 4 HOH A 125 425 296 HOH HOH . E 4 HOH A 126 426 234 HOH HOH . E 4 HOH A 127 427 258 HOH HOH . E 4 HOH A 128 428 284 HOH HOH . E 4 HOH A 129 429 16 HOH HOH . E 4 HOH A 130 430 259 HOH HOH . E 4 HOH A 131 431 8 HOH HOH . E 4 HOH A 132 432 319 HOH HOH . E 4 HOH A 133 433 342 HOH HOH . E 4 HOH A 134 434 320 HOH HOH . E 4 HOH A 135 435 14 HOH HOH . E 4 HOH A 136 436 337 HOH HOH . E 4 HOH A 137 437 24 HOH HOH . E 4 HOH A 138 438 25 HOH HOH . E 4 HOH A 139 439 309 HOH HOH . E 4 HOH A 140 440 253 HOH HOH . E 4 HOH A 141 441 30 HOH HOH . E 4 HOH A 142 442 328 HOH HOH . E 4 HOH A 143 443 2 HOH HOH . E 4 HOH A 144 444 288 HOH HOH . E 4 HOH A 145 445 256 HOH HOH . E 4 HOH A 146 446 316 HOH HOH . E 4 HOH A 147 447 11 HOH HOH . E 4 HOH A 148 448 311 HOH HOH . E 4 HOH A 149 449 231 HOH HOH . E 4 HOH A 150 450 340 HOH HOH . E 4 HOH A 151 451 347 HOH HOH . E 4 HOH A 152 452 20 HOH HOH . E 4 HOH A 153 453 260 HOH HOH . E 4 HOH A 154 454 330 HOH HOH . E 4 HOH A 155 455 26 HOH HOH . E 4 HOH A 156 456 310 HOH HOH . E 4 HOH A 157 457 32 HOH HOH . E 4 HOH A 158 458 10 HOH HOH . E 4 HOH A 159 459 332 HOH HOH . E 4 HOH A 160 460 335 HOH HOH . E 4 HOH A 161 461 299 HOH HOH . E 4 HOH A 162 462 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JGY . . . D 3 38.286 3.194 73.748 0.61 13.08 ? C10 JGY 203 A 1 HETATM 2 C C13 JGY . . . D 3 38.484 5.849 71.736 0.61 11.68 ? C13 JGY 203 A 1 HETATM 3 C C01 JGY . . . D 3 41.312 -2.634 74.129 0.61 26.46 ? C01 JGY 203 A 1 HETATM 4 N N02 JGY . . . D 3 40.899 -1.511 74.928 0.61 25.3 ? N02 JGY 203 A 1 HETATM 5 C C03 JGY . . . D 3 41.134 -1.351 76.3 0.61 24.18 ? C03 JGY 203 A 1 HETATM 6 C C04 JGY . . . D 3 40.55 -0.164 76.642 0.61 23.96 ? C04 JGY 203 A 1 HETATM 7 C C05 JGY . . . D 3 40.022 0.332 75.435 0.61 20.63 ? C05 JGY 203 A 1 HETATM 8 N N06 JGY . . . D 3 40.191 -0.458 74.381 0.61 21.26 ? N06 JGY 203 A 1 HETATM 9 C C07 JGY . . . D 3 39.335 1.615 75.28 0.61 16.53 ? C07 JGY 203 A 1 HETATM 10 O O08 JGY . . . D 3 39.057 2.245 76.261 0.61 15.97 ? O08 JGY 203 A 1 HETATM 11 N N09 JGY . . . D 3 39.023 1.974 74.033 0.61 15.14 ? N09 JGY 203 A 1 HETATM 12 C C11 JGY . . . D 3 39.163 4.446 73.568 0.61 11.51 ? C11 JGY 203 A 1 HETATM 13 C C12 JGY . . . D 3 38.262 5.634 73.22 0.61 12.3 ? C12 JGY 203 A 1 HETATM 14 C C14 JGY . . . D 3 39.335 4.661 71.338 0.61 11.29 ? C14 JGY 203 A 1 HETATM 15 O O15 JGY . . . D 3 39.984 4.16 72.469 0.61 14.65 ? O15 JGY 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 1049 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 15 #