data_5R8W # _model_server_result.job_id IoZTomUXn7NwxC3RJa9M7w _model_server_result.datetime_utc '2024-11-13 06:55:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5R8W # _exptl.entry_id 5R8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.227 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethylthieno[2,3-d]pyrimidin-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R8W _cell.length_a 45.78 _cell.length_b 86.1 _cell.length_c 127.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 155 A ASN 155 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc2 A OD2 ASP 168 A ASP 168 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 H MG MG . A MG 407 1_555 K O HOH . A HOH 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc4 H MG MG . A MG 407 1_555 K O HOH . A HOH 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc5 H MG MG . A MG 407 1_555 K O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc6 H MG MG . A MG 407 1_555 K O HOH . A HOH 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C8 H8 N2 O S' _chem_comp.formula_weight 180.227 _chem_comp.id JND _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethylthieno[2,3-d]pyrimidin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 JND sing 182 n n C02 C03 JND sing 183 n n C03 C04 JND doub 184 n y C03 S12 JND sing 185 n y C04 C05 JND sing 186 n y O07 C06 JND doub 187 n n C05 C06 JND sing 188 n n C05 C11 JND doub 189 n y S12 C11 JND sing 190 n y C06 N08 JND sing 191 n n C11 N10 JND sing 192 n n N08 C09 JND sing 193 n n N10 C09 JND doub 194 n n C01 H012 JND sing 195 n n C01 H013 JND sing 196 n n C01 H011 JND sing 197 n n C02 H021 JND sing 198 n n C02 H022 JND sing 199 n n C04 H041 JND sing 200 n n N08 H081 JND sing 201 n n C09 H091 JND sing 202 n n # _atom_sites.entry_id 5R8W _atom_sites.fract_transf_matrix[1][1] 0.021844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JND A 1 401 401 JND LIG . C 3 CL A 1 402 3 CL CL . D 3 CL A 1 403 4 CL CL . E 3 CL A 1 404 5 CL CL . F 3 CL A 1 405 6 CL CL . G 3 CL A 1 406 7 CL CL . H 4 MG A 1 407 1 MG MG . I 5 SO4 A 1 408 1 SO4 SO4 . J 6 DMS A 1 409 1 DMS DMS . K 7 HOH A 1 501 172 HOH HOH . K 7 HOH A 2 502 422 HOH HOH . K 7 HOH A 3 503 180 HOH HOH . K 7 HOH A 4 504 186 HOH HOH . K 7 HOH A 5 505 21 HOH HOH . K 7 HOH A 6 506 515 HOH HOH . K 7 HOH A 7 507 480 HOH HOH . K 7 HOH A 8 508 38 HOH HOH . K 7 HOH A 9 509 138 HOH HOH . K 7 HOH A 10 510 15 HOH HOH . K 7 HOH A 11 511 56 HOH HOH . K 7 HOH A 12 512 300 HOH HOH . K 7 HOH A 13 513 71 HOH HOH . K 7 HOH A 14 514 43 HOH HOH . K 7 HOH A 15 515 14 HOH HOH . K 7 HOH A 16 516 122 HOH HOH . K 7 HOH A 17 517 35 HOH HOH . K 7 HOH A 18 518 152 HOH HOH . K 7 HOH A 19 519 69 HOH HOH . K 7 HOH A 20 520 46 HOH HOH . K 7 HOH A 21 521 6 HOH HOH . K 7 HOH A 22 522 60 HOH HOH . K 7 HOH A 23 523 5 HOH HOH . K 7 HOH A 24 524 44 HOH HOH . K 7 HOH A 25 525 63 HOH HOH . K 7 HOH A 26 526 22 HOH HOH . K 7 HOH A 27 527 72 HOH HOH . K 7 HOH A 28 528 76 HOH HOH . K 7 HOH A 29 529 33 HOH HOH . K 7 HOH A 30 530 55 HOH HOH . K 7 HOH A 31 531 107 HOH HOH . K 7 HOH A 32 532 239 HOH HOH . K 7 HOH A 33 533 20 HOH HOH . K 7 HOH A 34 534 166 HOH HOH . K 7 HOH A 35 535 82 HOH HOH . K 7 HOH A 36 536 64 HOH HOH . K 7 HOH A 37 537 237 HOH HOH . K 7 HOH A 38 538 77 HOH HOH . K 7 HOH A 39 539 58 HOH HOH . K 7 HOH A 40 540 46 HOH HOH . K 7 HOH A 41 541 50 HOH HOH . K 7 HOH A 42 542 64 HOH HOH . K 7 HOH A 43 543 17 HOH HOH . K 7 HOH A 44 544 25 HOH HOH . K 7 HOH A 45 545 15 HOH HOH . K 7 HOH A 46 546 79 HOH HOH . K 7 HOH A 47 547 2 HOH HOH . K 7 HOH A 48 548 236 HOH HOH . K 7 HOH A 49 549 160 HOH HOH . K 7 HOH A 50 550 273 HOH HOH . K 7 HOH A 51 551 62 HOH HOH . K 7 HOH A 52 552 49 HOH HOH . K 7 HOH A 53 553 3 HOH HOH . K 7 HOH A 54 554 110 HOH HOH . K 7 HOH A 55 555 86 HOH HOH . K 7 HOH A 56 556 103 HOH HOH . K 7 HOH A 57 557 30 HOH HOH . K 7 HOH A 58 558 2 HOH HOH . K 7 HOH A 59 559 96 HOH HOH . K 7 HOH A 60 560 187 HOH HOH . K 7 HOH A 61 561 91 HOH HOH . K 7 HOH A 62 562 207 HOH HOH . K 7 HOH A 63 563 42 HOH HOH . K 7 HOH A 64 564 16 HOH HOH . K 7 HOH A 65 565 33 HOH HOH . K 7 HOH A 66 566 74 HOH HOH . K 7 HOH A 67 567 508 HOH HOH . K 7 HOH A 68 568 298 HOH HOH . K 7 HOH A 69 569 68 HOH HOH . K 7 HOH A 70 570 90 HOH HOH . K 7 HOH A 71 571 89 HOH HOH . K 7 HOH A 72 572 22 HOH HOH . K 7 HOH A 73 573 119 HOH HOH . K 7 HOH A 74 574 70 HOH HOH . K 7 HOH A 75 575 471 HOH HOH . K 7 HOH A 76 576 472 HOH HOH . K 7 HOH A 77 577 120 HOH HOH . K 7 HOH A 78 578 52 HOH HOH . K 7 HOH A 79 579 201 HOH HOH . K 7 HOH A 80 580 24 HOH HOH . K 7 HOH A 81 581 99 HOH HOH . K 7 HOH A 82 582 15 HOH HOH . K 7 HOH A 83 583 47 HOH HOH . K 7 HOH A 84 584 29 HOH HOH . K 7 HOH A 85 585 117 HOH HOH . K 7 HOH A 86 586 1 HOH HOH . K 7 HOH A 87 587 484 HOH HOH . K 7 HOH A 88 588 9 HOH HOH . K 7 HOH A 89 589 482 HOH HOH . K 7 HOH A 90 590 507 HOH HOH . K 7 HOH A 91 591 67 HOH HOH . K 7 HOH A 92 592 144 HOH HOH . K 7 HOH A 93 593 27 HOH HOH . K 7 HOH A 94 594 192 HOH HOH . K 7 HOH A 95 595 26 HOH HOH . K 7 HOH A 96 596 121 HOH HOH . K 7 HOH A 97 597 9 HOH HOH . K 7 HOH A 98 598 254 HOH HOH . K 7 HOH A 99 599 116 HOH HOH . K 7 HOH A 100 600 76 HOH HOH . K 7 HOH A 101 601 111 HOH HOH . K 7 HOH A 102 602 474 HOH HOH . K 7 HOH A 103 603 2 HOH HOH . K 7 HOH A 104 604 486 HOH HOH . K 7 HOH A 105 605 136 HOH HOH . K 7 HOH A 106 606 134 HOH HOH . K 7 HOH A 107 607 85 HOH HOH . K 7 HOH A 108 608 13 HOH HOH . K 7 HOH A 109 609 476 HOH HOH . K 7 HOH A 110 610 75 HOH HOH . K 7 HOH A 111 611 108 HOH HOH . K 7 HOH A 112 612 29 HOH HOH . K 7 HOH A 113 613 12 HOH HOH . K 7 HOH A 114 614 32 HOH HOH . K 7 HOH A 115 615 174 HOH HOH . K 7 HOH A 116 616 502 HOH HOH . K 7 HOH A 117 617 48 HOH HOH . K 7 HOH A 118 618 34 HOH HOH . K 7 HOH A 119 619 65 HOH HOH . K 7 HOH A 120 620 175 HOH HOH . K 7 HOH A 121 621 52 HOH HOH . K 7 HOH A 122 622 114 HOH HOH . K 7 HOH A 123 623 95 HOH HOH . K 7 HOH A 124 624 7 HOH HOH . K 7 HOH A 125 625 105 HOH HOH . K 7 HOH A 126 626 115 HOH HOH . K 7 HOH A 127 627 159 HOH HOH . K 7 HOH A 128 628 416 HOH HOH . K 7 HOH A 129 629 481 HOH HOH . K 7 HOH A 130 630 475 HOH HOH . K 7 HOH A 131 631 73 HOH HOH . K 7 HOH A 132 632 93 HOH HOH . K 7 HOH A 133 633 390 HOH HOH . K 7 HOH A 134 634 183 HOH HOH . K 7 HOH A 135 635 36 HOH HOH . K 7 HOH A 136 636 127 HOH HOH . K 7 HOH A 137 637 31 HOH HOH . K 7 HOH A 138 638 6 HOH HOH . K 7 HOH A 139 639 209 HOH HOH . K 7 HOH A 140 640 39 HOH HOH . K 7 HOH A 141 641 417 HOH HOH . K 7 HOH A 142 642 228 HOH HOH . K 7 HOH A 143 643 132 HOH HOH . K 7 HOH A 144 644 244 HOH HOH . K 7 HOH A 145 645 11 HOH HOH . K 7 HOH A 146 646 137 HOH HOH . K 7 HOH A 147 647 30 HOH HOH . K 7 HOH A 148 648 8 HOH HOH . K 7 HOH A 149 649 44 HOH HOH . K 7 HOH A 150 650 21 HOH HOH . K 7 HOH A 151 651 23 HOH HOH . K 7 HOH A 152 652 210 HOH HOH . K 7 HOH A 153 653 135 HOH HOH . K 7 HOH A 154 654 406 HOH HOH . K 7 HOH A 155 655 125 HOH HOH . K 7 HOH A 156 656 512 HOH HOH . K 7 HOH A 157 657 18 HOH HOH . K 7 HOH A 158 658 84 HOH HOH . K 7 HOH A 159 659 511 HOH HOH . K 7 HOH A 160 660 7 HOH HOH . K 7 HOH A 161 661 123 HOH HOH . K 7 HOH A 162 662 42 HOH HOH . K 7 HOH A 163 663 193 HOH HOH . K 7 HOH A 164 664 283 HOH HOH . K 7 HOH A 165 665 43 HOH HOH . K 7 HOH A 166 666 513 HOH HOH . K 7 HOH A 167 667 126 HOH HOH . K 7 HOH A 168 668 23 HOH HOH . K 7 HOH A 169 669 141 HOH HOH . K 7 HOH A 170 670 145 HOH HOH . K 7 HOH A 171 671 112 HOH HOH . K 7 HOH A 172 672 20 HOH HOH . K 7 HOH A 173 673 155 HOH HOH . K 7 HOH A 174 674 311 HOH HOH . K 7 HOH A 175 675 171 HOH HOH . K 7 HOH A 176 676 66 HOH HOH . K 7 HOH A 177 677 470 HOH HOH . K 7 HOH A 178 678 45 HOH HOH . K 7 HOH A 179 679 35 HOH HOH . K 7 HOH A 180 680 5 HOH HOH . K 7 HOH A 181 681 37 HOH HOH . K 7 HOH A 182 682 226 HOH HOH . K 7 HOH A 183 683 421 HOH HOH . K 7 HOH A 184 684 41 HOH HOH . K 7 HOH A 185 685 98 HOH HOH . K 7 HOH A 186 686 34 HOH HOH . K 7 HOH A 187 687 55 HOH HOH . K 7 HOH A 188 688 18 HOH HOH . K 7 HOH A 189 689 68 HOH HOH . K 7 HOH A 190 690 40 HOH HOH . K 7 HOH A 191 691 8 HOH HOH . K 7 HOH A 192 692 501 HOH HOH . K 7 HOH A 193 693 86 HOH HOH . K 7 HOH A 194 694 426 HOH HOH . K 7 HOH A 195 695 267 HOH HOH . K 7 HOH A 196 696 152 HOH HOH . K 7 HOH A 197 697 514 HOH HOH . K 7 HOH A 198 698 27 HOH HOH . K 7 HOH A 199 699 1 HOH HOH . K 7 HOH A 200 700 3 HOH HOH . K 7 HOH A 201 701 28 HOH HOH . K 7 HOH A 202 702 410 HOH HOH . K 7 HOH A 203 703 490 HOH HOH . K 7 HOH A 204 704 479 HOH HOH . K 7 HOH A 205 705 183 HOH HOH . K 7 HOH A 206 706 487 HOH HOH . K 7 HOH A 207 707 478 HOH HOH . K 7 HOH A 208 708 38 HOH HOH . K 7 HOH A 209 709 499 HOH HOH . K 7 HOH A 210 710 306 HOH HOH . K 7 HOH A 211 711 147 HOH HOH . K 7 HOH A 212 712 80 HOH HOH . K 7 HOH A 213 713 488 HOH HOH . K 7 HOH A 214 714 23 HOH HOH . K 7 HOH A 215 715 414 HOH HOH . K 7 HOH A 216 716 404 HOH HOH . K 7 HOH A 217 717 20 HOH HOH . K 7 HOH A 218 718 78 HOH HOH . K 7 HOH A 219 719 104 HOH HOH . K 7 HOH A 220 720 505 HOH HOH . K 7 HOH A 221 721 113 HOH HOH . K 7 HOH A 222 722 500 HOH HOH . K 7 HOH A 223 723 411 HOH HOH . K 7 HOH A 224 724 183 HOH HOH . K 7 HOH A 225 725 242 HOH HOH . K 7 HOH A 226 726 148 HOH HOH . K 7 HOH A 227 727 415 HOH HOH . K 7 HOH A 228 728 184 HOH HOH . K 7 HOH A 229 729 496 HOH HOH . K 7 HOH A 230 730 88 HOH HOH . K 7 HOH A 231 731 493 HOH HOH . K 7 HOH A 232 732 510 HOH HOH . K 7 HOH A 233 733 174 HOH HOH . K 7 HOH A 234 734 97 HOH HOH . K 7 HOH A 235 735 171 HOH HOH . K 7 HOH A 236 736 412 HOH HOH . K 7 HOH A 237 737 203 HOH HOH . K 7 HOH A 238 738 92 HOH HOH . K 7 HOH A 239 739 477 HOH HOH . K 7 HOH A 240 740 172 HOH HOH . K 7 HOH A 241 741 223 HOH HOH . K 7 HOH A 242 742 468 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 JND . . . B 2 38.488 94.99 9.351 0.38 24.06 ? C01 JND 401 A 1 HETATM 2 C C02 JND . . . B 2 39.572 95.936 9.807 0.38 22.99 ? C02 JND 401 A 1 HETATM 3 C C03 JND . . . B 2 40.849 95.753 9.045 0.38 21.83 ? C03 JND 401 A 1 HETATM 4 C C04 JND . . . B 2 41.433 96.672 8.174 0.38 21.87 ? C04 JND 401 A 1 HETATM 5 C C05 JND . . . B 2 42.658 96.132 7.642 0.38 21.17 ? C05 JND 401 A 1 HETATM 6 C C06 JND . . . B 2 43.606 96.778 6.72 0.38 23.57 ? C06 JND 401 A 1 HETATM 7 O O07 JND . . . B 2 43.581 97.922 6.255 0.38 22.41 ? O07 JND 401 A 1 HETATM 8 N N08 JND . . . B 2 44.696 95.96 6.373 0.38 22.29 ? N08 JND 401 A 1 HETATM 9 C C09 JND . . . B 2 44.809 94.684 6.896 0.38 22.22 ? C09 JND 401 A 1 HETATM 10 N N10 JND . . . B 2 44.014 94.096 7.76 0.38 22.05 ? N10 JND 401 A 1 HETATM 11 C C11 JND . . . B 2 42.915 94.861 8.115 0.38 22.39 ? C11 JND 401 A 1 HETATM 12 S S12 JND . . . B 2 41.762 94.261 9.206 0.38 20.17 ? S12 JND 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #