data_5R9P # _model_server_result.job_id Wq5O-EgVKGP1naIi4-1fAg _model_server_result.datetime_utc '2024-11-23 15:49:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 5R9P # _exptl.entry_id 5R9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R9P _cell.length_a 45.951 _cell.length_b 86.183 _cell.length_c 126.899 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 155 A ASN 155 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 A OD2 ASP 168 A ASP 168 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc3 H MG MG . A MG 407 1_555 K O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc4 H MG MG . A MG 407 1_555 K O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc5 H MG MG . A MG 407 1_555 K O HOH . A HOH 667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc6 H MG MG . A MG 407 1_555 K O HOH . A HOH 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5R9P _atom_sites.fract_transf_matrix[1][1] 0.021762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SFY A 1 401 401 SFY LIG . C 3 CL A 1 402 3 CL CL . D 3 CL A 1 403 4 CL CL . E 3 CL A 1 404 5 CL CL . F 3 CL A 1 405 6 CL CL . G 3 CL A 1 406 7 CL CL . H 4 MG A 1 407 1 MG MG . I 5 SO4 A 1 408 1 SO4 SO4 . J 6 DMS A 1 409 1 DMS DMS . K 7 HOH A 1 501 422 HOH HOH . K 7 HOH A 2 502 506 HOH HOH . K 7 HOH A 3 503 100 HOH HOH . K 7 HOH A 4 504 21 HOH HOH . K 7 HOH A 5 505 201 HOH HOH . K 7 HOH A 6 506 480 HOH HOH . K 7 HOH A 7 507 138 HOH HOH . K 7 HOH A 8 508 43 HOH HOH . K 7 HOH A 9 509 122 HOH HOH . K 7 HOH A 10 510 24 HOH HOH . K 7 HOH A 11 511 178 HOH HOH . K 7 HOH A 12 512 152 HOH HOH . K 7 HOH A 13 513 77 HOH HOH . K 7 HOH A 14 514 16 HOH HOH . K 7 HOH A 15 515 117 HOH HOH . K 7 HOH A 16 516 123 HOH HOH . K 7 HOH A 17 517 236 HOH HOH . K 7 HOH A 18 518 71 HOH HOH . K 7 HOH A 19 519 63 HOH HOH . K 7 HOH A 20 520 160 HOH HOH . K 7 HOH A 21 521 15 HOH HOH . K 7 HOH A 22 522 298 HOH HOH . K 7 HOH A 23 523 25 HOH HOH . K 7 HOH A 24 524 90 HOH HOH . K 7 HOH A 25 525 14 HOH HOH . K 7 HOH A 26 526 38 HOH HOH . K 7 HOH A 27 527 133 HOH HOH . K 7 HOH A 28 528 64 HOH HOH . K 7 HOH A 29 529 58 HOH HOH . K 7 HOH A 30 530 56 HOH HOH . K 7 HOH A 31 531 239 HOH HOH . K 7 HOH A 32 532 6 HOH HOH . K 7 HOH A 33 533 507 HOH HOH . K 7 HOH A 34 534 30 HOH HOH . K 7 HOH A 35 535 52 HOH HOH . K 7 HOH A 36 536 60 HOH HOH . K 7 HOH A 37 537 44 HOH HOH . K 7 HOH A 38 538 74 HOH HOH . K 7 HOH A 39 539 2 HOH HOH . K 7 HOH A 40 540 508 HOH HOH . K 7 HOH A 41 541 42 HOH HOH . K 7 HOH A 42 542 107 HOH HOH . K 7 HOH A 43 543 237 HOH HOH . K 7 HOH A 44 544 120 HOH HOH . K 7 HOH A 45 545 12 HOH HOH . K 7 HOH A 46 546 17 HOH HOH . K 7 HOH A 47 547 300 HOH HOH . K 7 HOH A 48 548 134 HOH HOH . K 7 HOH A 49 549 504 HOH HOH . K 7 HOH A 50 550 5 HOH HOH . K 7 HOH A 51 551 144 HOH HOH . K 7 HOH A 52 552 68 HOH HOH . K 7 HOH A 53 553 1 HOH HOH . K 7 HOH A 54 554 91 HOH HOH . K 7 HOH A 55 555 16 HOH HOH . K 7 HOH A 56 556 29 HOH HOH . K 7 HOH A 57 557 89 HOH HOH . K 7 HOH A 58 558 390 HOH HOH . K 7 HOH A 59 559 50 HOH HOH . K 7 HOH A 60 560 64 HOH HOH . K 7 HOH A 61 561 3 HOH HOH . K 7 HOH A 62 562 194 HOH HOH . K 7 HOH A 63 563 117 HOH HOH . K 7 HOH A 64 564 132 HOH HOH . K 7 HOH A 65 565 79 HOH HOH . K 7 HOH A 66 566 166 HOH HOH . K 7 HOH A 67 567 9 HOH HOH . K 7 HOH A 68 568 46 HOH HOH . K 7 HOH A 69 569 70 HOH HOH . K 7 HOH A 70 570 96 HOH HOH . K 7 HOH A 71 571 46 HOH HOH . K 7 HOH A 72 572 228 HOH HOH . K 7 HOH A 73 573 482 HOH HOH . K 7 HOH A 74 574 119 HOH HOH . K 7 HOH A 75 575 2 HOH HOH . K 7 HOH A 76 576 24 HOH HOH . K 7 HOH A 77 577 409 HOH HOH . K 7 HOH A 78 578 103 HOH HOH . K 7 HOH A 79 579 51 HOH HOH . K 7 HOH A 80 580 33 HOH HOH . K 7 HOH A 81 581 273 HOH HOH . K 7 HOH A 82 582 26 HOH HOH . K 7 HOH A 83 583 168 HOH HOH . K 7 HOH A 84 584 67 HOH HOH . K 7 HOH A 85 585 484 HOH HOH . K 7 HOH A 86 586 209 HOH HOH . K 7 HOH A 87 587 99 HOH HOH . K 7 HOH A 88 588 172 HOH HOH . K 7 HOH A 89 589 76 HOH HOH . K 7 HOH A 90 590 177 HOH HOH . K 7 HOH A 91 591 69 HOH HOH . K 7 HOH A 92 592 47 HOH HOH . K 7 HOH A 93 593 15 HOH HOH . K 7 HOH A 94 594 22 HOH HOH . K 7 HOH A 95 595 75 HOH HOH . K 7 HOH A 96 596 7 HOH HOH . K 7 HOH A 97 597 62 HOH HOH . K 7 HOH A 98 598 114 HOH HOH . K 7 HOH A 99 599 13 HOH HOH . K 7 HOH A 100 600 502 HOH HOH . K 7 HOH A 101 601 474 HOH HOH . K 7 HOH A 102 602 55 HOH HOH . K 7 HOH A 103 603 9 HOH HOH . K 7 HOH A 104 604 48 HOH HOH . K 7 HOH A 105 605 121 HOH HOH . K 7 HOH A 106 606 41 HOH HOH . K 7 HOH A 107 607 207 HOH HOH . K 7 HOH A 108 608 108 HOH HOH . K 7 HOH A 109 609 95 HOH HOH . K 7 HOH A 110 610 85 HOH HOH . K 7 HOH A 111 611 86 HOH HOH . K 7 HOH A 112 612 59 HOH HOH . K 7 HOH A 113 613 33 HOH HOH . K 7 HOH A 114 614 20 HOH HOH . K 7 HOH A 115 615 3 HOH HOH . K 7 HOH A 116 616 2 HOH HOH . K 7 HOH A 117 617 476 HOH HOH . K 7 HOH A 118 618 12 HOH HOH . K 7 HOH A 119 619 105 HOH HOH . K 7 HOH A 120 620 254 HOH HOH . K 7 HOH A 121 621 22 HOH HOH . K 7 HOH A 122 622 72 HOH HOH . K 7 HOH A 123 623 475 HOH HOH . K 7 HOH A 124 624 175 HOH HOH . K 7 HOH A 125 625 65 HOH HOH . K 7 HOH A 126 626 23 HOH HOH . K 7 HOH A 127 627 34 HOH HOH . K 7 HOH A 128 628 472 HOH HOH . K 7 HOH A 129 629 115 HOH HOH . K 7 HOH A 130 630 49 HOH HOH . K 7 HOH A 131 631 32 HOH HOH . K 7 HOH A 132 632 471 HOH HOH . K 7 HOH A 133 633 36 HOH HOH . K 7 HOH A 134 634 192 HOH HOH . K 7 HOH A 135 635 210 HOH HOH . K 7 HOH A 136 636 244 HOH HOH . K 7 HOH A 137 637 93 HOH HOH . K 7 HOH A 138 638 11 HOH HOH . K 7 HOH A 139 639 39 HOH HOH . K 7 HOH A 140 640 417 HOH HOH . K 7 HOH A 141 641 137 HOH HOH . K 7 HOH A 142 642 136 HOH HOH . K 7 HOH A 143 643 486 HOH HOH . K 7 HOH A 144 644 37 HOH HOH . K 7 HOH A 145 645 125 HOH HOH . K 7 HOH A 146 646 6 HOH HOH . K 7 HOH A 147 647 116 HOH HOH . K 7 HOH A 148 648 135 HOH HOH . K 7 HOH A 149 649 183 HOH HOH . K 7 HOH A 150 650 84 HOH HOH . K 7 HOH A 151 651 127 HOH HOH . K 7 HOH A 152 652 174 HOH HOH . K 7 HOH A 153 653 71 HOH HOH . K 7 HOH A 154 654 129 HOH HOH . K 7 HOH A 155 655 31 HOH HOH . K 7 HOH A 156 656 481 HOH HOH . K 7 HOH A 157 657 8 HOH HOH . K 7 HOH A 158 658 86 HOH HOH . K 7 HOH A 159 659 66 HOH HOH . K 7 HOH A 160 660 193 HOH HOH . K 7 HOH A 161 661 155 HOH HOH . K 7 HOH A 162 662 59 HOH HOH . K 7 HOH A 163 663 23 HOH HOH . K 7 HOH A 164 664 27 HOH HOH . K 7 HOH A 165 665 187 HOH HOH . K 7 HOH A 166 666 30 HOH HOH . K 7 HOH A 167 667 42 HOH HOH . K 7 HOH A 168 668 98 HOH HOH . K 7 HOH A 169 669 283 HOH HOH . K 7 HOH A 170 670 111 HOH HOH . K 7 HOH A 171 671 45 HOH HOH . K 7 HOH A 172 672 509 HOH HOH . K 7 HOH A 173 673 511 HOH HOH . K 7 HOH A 174 674 406 HOH HOH . K 7 HOH A 175 675 505 HOH HOH . K 7 HOH A 176 676 21 HOH HOH . K 7 HOH A 177 677 141 HOH HOH . K 7 HOH A 178 678 470 HOH HOH . K 7 HOH A 179 679 52 HOH HOH . K 7 HOH A 180 680 145 HOH HOH . K 7 HOH A 181 681 35 HOH HOH . K 7 HOH A 182 682 140 HOH HOH . K 7 HOH A 183 683 73 HOH HOH . K 7 HOH A 184 684 37 HOH HOH . K 7 HOH A 185 685 512 HOH HOH . K 7 HOH A 186 686 18 HOH HOH . K 7 HOH A 187 687 5 HOH HOH . K 7 HOH A 188 688 15 HOH HOH . K 7 HOH A 189 689 159 HOH HOH . K 7 HOH A 190 690 416 HOH HOH . K 7 HOH A 191 691 8 HOH HOH . K 7 HOH A 192 692 44 HOH HOH . K 7 HOH A 193 693 43 HOH HOH . K 7 HOH A 194 694 55 HOH HOH . K 7 HOH A 195 695 18 HOH HOH . K 7 HOH A 196 696 7 HOH HOH . K 7 HOH A 197 697 126 HOH HOH . K 7 HOH A 198 698 421 HOH HOH . K 7 HOH A 199 699 35 HOH HOH . K 7 HOH A 200 700 20 HOH HOH . K 7 HOH A 201 701 152 HOH HOH . K 7 HOH A 202 702 171 HOH HOH . K 7 HOH A 203 703 139 HOH HOH . K 7 HOH A 204 704 34 HOH HOH . K 7 HOH A 205 705 112 HOH HOH . K 7 HOH A 206 706 110 HOH HOH . K 7 HOH A 207 707 1 HOH HOH . K 7 HOH A 208 708 479 HOH HOH . K 7 HOH A 209 709 426 HOH HOH . K 7 HOH A 210 710 267 HOH HOH . K 7 HOH A 211 711 46 HOH HOH . K 7 HOH A 212 712 68 HOH HOH . K 7 HOH A 213 713 28 HOH HOH . K 7 HOH A 214 714 501 HOH HOH . K 7 HOH A 215 715 311 HOH HOH . K 7 HOH A 216 716 226 HOH HOH . K 7 HOH A 217 717 80 HOH HOH . K 7 HOH A 218 718 76 HOH HOH . K 7 HOH A 219 719 165 HOH HOH . K 7 HOH A 220 720 487 HOH HOH . K 7 HOH A 221 721 410 HOH HOH . K 7 HOH A 222 722 27 HOH HOH . K 7 HOH A 223 723 38 HOH HOH . K 7 HOH A 224 724 499 HOH HOH . K 7 HOH A 225 725 183 HOH HOH . K 7 HOH A 226 726 478 HOH HOH . K 7 HOH A 227 727 404 HOH HOH . K 7 HOH A 228 728 37 HOH HOH . K 7 HOH A 229 729 306 HOH HOH . K 7 HOH A 230 730 23 HOH HOH . K 7 HOH A 231 731 414 HOH HOH . K 7 HOH A 232 732 110 HOH HOH . K 7 HOH A 233 733 20 HOH HOH . K 7 HOH A 234 734 415 HOH HOH . K 7 HOH A 235 735 147 HOH HOH . K 7 HOH A 236 736 492 HOH HOH . K 7 HOH A 237 737 78 HOH HOH . K 7 HOH A 238 738 488 HOH HOH . K 7 HOH A 239 739 50 HOH HOH . K 7 HOH A 240 740 113 HOH HOH . K 7 HOH A 241 741 148 HOH HOH . K 7 HOH A 242 742 411 HOH HOH . K 7 HOH A 243 743 174 HOH HOH . K 7 HOH A 244 744 493 HOH HOH . K 7 HOH A 245 745 500 HOH HOH . K 7 HOH A 246 746 183 HOH HOH . K 7 HOH A 247 747 88 HOH HOH . K 7 HOH A 248 748 490 HOH HOH . K 7 HOH A 249 749 242 HOH HOH . K 7 HOH A 250 750 491 HOH HOH . K 7 HOH A 251 751 496 HOH HOH . K 7 HOH A 252 752 418 HOH HOH . K 7 HOH A 253 753 412 HOH HOH . K 7 HOH A 254 754 73 HOH HOH . K 7 HOH A 255 755 510 HOH HOH . K 7 HOH A 256 756 203 HOH HOH . K 7 HOH A 257 757 97 HOH HOH . K 7 HOH A 258 758 104 HOH HOH . K 7 HOH A 259 759 171 HOH HOH . K 7 HOH A 260 760 223 HOH HOH . K 7 HOH A 261 761 172 HOH HOH . K 7 HOH A 262 762 92 HOH HOH . K 7 HOH A 263 763 477 HOH HOH . K 7 HOH A 264 764 468 HOH HOH . K 7 HOH A 265 765 235 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 43.688 _atom_site.Cartn_y 111.98 _atom_site.Cartn_z 28.837 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 407 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #