data_5R9W # _model_server_result.job_id O8L6tIFcC0JGd46jWjkiRQ _model_server_result.datetime_utc '2024-11-06 17:40:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5R9W # _exptl.entry_id 5R9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.28 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(1,3-benzodioxol-5-ylmethyl)ethanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R9W _cell.length_a 46.133 _cell.length_b 86.441 _cell.length_c 126.976 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 155 A ASN 155 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc2 A OD2 ASP 168 A ASP 168 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc3 H MG MG . A MG 407 1_555 K O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc4 H MG MG . A MG 407 1_555 K O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc5 H MG MG . A MG 407 1_555 K O HOH . A HOH 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? # _chem_comp.formula 'C10 H13 N O4 S' _chem_comp.formula_weight 243.28 _chem_comp.id STV _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(1,3-benzodioxol-5-ylmethyl)ethanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O S STV doub 303 n n C C1 STV sing 304 n n C1 S STV sing 305 n n S O1 STV doub 306 n n S N STV sing 307 n n N C2 STV sing 308 n n C2 C3 STV sing 309 n n C3 C8 STV doub 310 n y C3 C4 STV sing 311 n y C8 C7 STV sing 312 n y C4 C5 STV doub 313 n y C7 O2 STV sing 314 n n C7 C6 STV doub 315 n y O2 C9 STV sing 316 n n C5 C6 STV sing 317 n y C6 O3 STV sing 318 n n C9 O3 STV sing 319 n n C4 H1 STV sing 320 n n C5 H2 STV sing 321 n n C8 H3 STV sing 322 n n N H4 STV sing 323 n n C H5 STV sing 324 n n C H6 STV sing 325 n n C H7 STV sing 326 n n C1 H8 STV sing 327 n n C1 H9 STV sing 328 n n C2 H10 STV sing 329 n n C2 H11 STV sing 330 n n C9 H12 STV sing 331 n n C9 H13 STV sing 332 n n # _atom_sites.entry_id 5R9W _atom_sites.fract_transf_matrix[1][1] 0.021676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STV A 1 401 401 STV LIG . C 3 CL A 1 402 3 CL CL . D 3 CL A 1 403 4 CL CL . E 3 CL A 1 404 5 CL CL . F 3 CL A 1 405 6 CL CL . G 3 CL A 1 406 7 CL CL . H 4 MG A 1 407 1 MG MG . I 5 SO4 A 1 408 1 SO4 SO4 . J 6 DMS A 1 409 1 DMS DMS . K 7 HOH A 1 501 180 HOH HOH . K 7 HOH A 2 502 422 HOH HOH . K 7 HOH A 3 503 506 HOH HOH . K 7 HOH A 4 504 480 HOH HOH . K 7 HOH A 5 505 152 HOH HOH . K 7 HOH A 6 506 186 HOH HOH . K 7 HOH A 7 507 100 HOH HOH . K 7 HOH A 8 508 122 HOH HOH . K 7 HOH A 9 509 168 HOH HOH . K 7 HOH A 10 510 30 HOH HOH . K 7 HOH A 11 511 16 HOH HOH . K 7 HOH A 12 512 24 HOH HOH . K 7 HOH A 13 513 25 HOH HOH . K 7 HOH A 14 514 120 HOH HOH . K 7 HOH A 15 515 138 HOH HOH . K 7 HOH A 16 516 43 HOH HOH . K 7 HOH A 17 517 178 HOH HOH . K 7 HOH A 18 518 14 HOH HOH . K 7 HOH A 19 519 90 HOH HOH . K 7 HOH A 20 520 123 HOH HOH . K 7 HOH A 21 521 6 HOH HOH . K 7 HOH A 22 522 7 HOH HOH . K 7 HOH A 23 523 71 HOH HOH . K 7 HOH A 24 524 16 HOH HOH . K 7 HOH A 25 525 56 HOH HOH . K 7 HOH A 26 526 44 HOH HOH . K 7 HOH A 27 527 64 HOH HOH . K 7 HOH A 28 528 236 HOH HOH . K 7 HOH A 29 529 64 HOH HOH . K 7 HOH A 30 530 508 HOH HOH . K 7 HOH A 31 531 2 HOH HOH . K 7 HOH A 32 532 95 HOH HOH . K 7 HOH A 33 533 79 HOH HOH . K 7 HOH A 34 534 133 HOH HOH . K 7 HOH A 35 535 24 HOH HOH . K 7 HOH A 36 536 209 HOH HOH . K 7 HOH A 37 537 160 HOH HOH . K 7 HOH A 38 538 69 HOH HOH . K 7 HOH A 39 539 194 HOH HOH . K 7 HOH A 40 540 60 HOH HOH . K 7 HOH A 41 541 50 HOH HOH . K 7 HOH A 42 542 409 HOH HOH . K 7 HOH A 43 543 107 HOH HOH . K 7 HOH A 44 544 38 HOH HOH . K 7 HOH A 45 545 29 HOH HOH . K 7 HOH A 46 546 472 HOH HOH . K 7 HOH A 47 547 134 HOH HOH . K 7 HOH A 48 548 300 HOH HOH . K 7 HOH A 49 549 91 HOH HOH . K 7 HOH A 50 550 117 HOH HOH . K 7 HOH A 51 551 239 HOH HOH . K 7 HOH A 52 552 273 HOH HOH . K 7 HOH A 53 553 15 HOH HOH . K 7 HOH A 54 554 507 HOH HOH . K 7 HOH A 55 555 504 HOH HOH . K 7 HOH A 56 556 74 HOH HOH . K 7 HOH A 57 557 121 HOH HOH . K 7 HOH A 58 558 17 HOH HOH . K 7 HOH A 59 559 22 HOH HOH . K 7 HOH A 60 560 68 HOH HOH . K 7 HOH A 61 561 5 HOH HOH . K 7 HOH A 62 562 59 HOH HOH . K 7 HOH A 63 563 103 HOH HOH . K 7 HOH A 64 564 75 HOH HOH . K 7 HOH A 65 565 58 HOH HOH . K 7 HOH A 66 566 13 HOH HOH . K 7 HOH A 67 567 96 HOH HOH . K 7 HOH A 68 568 3 HOH HOH . K 7 HOH A 69 569 72 HOH HOH . K 7 HOH A 70 570 47 HOH HOH . K 7 HOH A 71 571 99 HOH HOH . K 7 HOH A 72 572 474 HOH HOH . K 7 HOH A 73 573 33 HOH HOH . K 7 HOH A 74 574 114 HOH HOH . K 7 HOH A 75 575 9 HOH HOH . K 7 HOH A 76 576 117 HOH HOH . K 7 HOH A 77 577 23 HOH HOH . K 7 HOH A 78 578 15 HOH HOH . K 7 HOH A 79 579 89 HOH HOH . K 7 HOH A 80 580 41 HOH HOH . K 7 HOH A 81 581 2 HOH HOH . K 7 HOH A 82 582 192 HOH HOH . K 7 HOH A 83 583 172 HOH HOH . K 7 HOH A 84 584 502 HOH HOH . K 7 HOH A 85 585 42 HOH HOH . K 7 HOH A 86 586 2 HOH HOH . K 7 HOH A 87 587 48 HOH HOH . K 7 HOH A 88 588 175 HOH HOH . K 7 HOH A 89 589 1 HOH HOH . K 7 HOH A 90 590 144 HOH HOH . K 7 HOH A 91 591 32 HOH HOH . K 7 HOH A 92 592 484 HOH HOH . K 7 HOH A 93 593 26 HOH HOH . K 7 HOH A 94 594 482 HOH HOH . K 7 HOH A 95 595 9 HOH HOH . K 7 HOH A 96 596 237 HOH HOH . K 7 HOH A 97 597 105 HOH HOH . K 7 HOH A 98 598 119 HOH HOH . K 7 HOH A 99 599 46 HOH HOH . K 7 HOH A 100 600 33 HOH HOH . K 7 HOH A 101 601 475 HOH HOH . K 7 HOH A 102 602 22 HOH HOH . K 7 HOH A 103 603 476 HOH HOH . K 7 HOH A 104 604 34 HOH HOH . K 7 HOH A 105 605 20 HOH HOH . K 7 HOH A 106 606 254 HOH HOH . K 7 HOH A 107 607 39 HOH HOH . K 7 HOH A 108 608 111 HOH HOH . K 7 HOH A 109 609 486 HOH HOH . K 7 HOH A 110 610 125 HOH HOH . K 7 HOH A 111 611 12 HOH HOH . K 7 HOH A 112 612 76 HOH HOH . K 7 HOH A 113 613 51 HOH HOH . K 7 HOH A 114 614 11 HOH HOH . K 7 HOH A 115 615 207 HOH HOH . K 7 HOH A 116 616 67 HOH HOH . K 7 HOH A 117 617 70 HOH HOH . K 7 HOH A 118 618 98 HOH HOH . K 7 HOH A 119 619 93 HOH HOH . K 7 HOH A 120 620 85 HOH HOH . K 7 HOH A 121 621 174 HOH HOH . K 7 HOH A 122 622 187 HOH HOH . K 7 HOH A 123 623 62 HOH HOH . K 7 HOH A 124 624 6 HOH HOH . K 7 HOH A 125 625 36 HOH HOH . K 7 HOH A 126 626 129 HOH HOH . K 7 HOH A 127 627 45 HOH HOH . K 7 HOH A 128 628 12 HOH HOH . K 7 HOH A 129 629 183 HOH HOH . K 7 HOH A 130 630 86 HOH HOH . K 7 HOH A 131 631 108 HOH HOH . K 7 HOH A 132 632 116 HOH HOH . K 7 HOH A 133 633 84 HOH HOH . K 7 HOH A 134 634 417 HOH HOH . K 7 HOH A 135 635 140 HOH HOH . K 7 HOH A 136 636 27 HOH HOH . K 7 HOH A 137 637 471 HOH HOH . K 7 HOH A 138 638 127 HOH HOH . K 7 HOH A 139 639 49 HOH HOH . K 7 HOH A 140 640 37 HOH HOH . K 7 HOH A 141 641 21 HOH HOH . K 7 HOH A 142 642 35 HOH HOH . K 7 HOH A 143 643 406 HOH HOH . K 7 HOH A 144 644 86 HOH HOH . K 7 HOH A 145 645 244 HOH HOH . K 7 HOH A 146 646 66 HOH HOH . K 7 HOH A 147 647 115 HOH HOH . K 7 HOH A 148 648 37 HOH HOH . K 7 HOH A 149 649 481 HOH HOH . K 7 HOH A 150 650 65 HOH HOH . K 7 HOH A 151 651 509 HOH HOH . K 7 HOH A 152 652 18 HOH HOH . K 7 HOH A 153 653 55 HOH HOH . K 7 HOH A 154 654 30 HOH HOH . K 7 HOH A 155 655 505 HOH HOH . K 7 HOH A 156 656 31 HOH HOH . K 7 HOH A 157 657 135 HOH HOH . K 7 HOH A 158 658 59 HOH HOH . K 7 HOH A 159 659 421 HOH HOH . K 7 HOH A 160 660 511 HOH HOH . K 7 HOH A 161 661 44 HOH HOH . K 7 HOH A 162 662 145 HOH HOH . K 7 HOH A 163 663 15 HOH HOH . K 7 HOH A 164 664 5 HOH HOH . K 7 HOH A 165 665 210 HOH HOH . K 7 HOH A 166 666 23 HOH HOH . K 7 HOH A 167 667 37 HOH HOH . K 7 HOH A 168 668 193 HOH HOH . K 7 HOH A 169 669 23 HOH HOH . K 7 HOH A 170 670 155 HOH HOH . K 7 HOH A 171 671 283 HOH HOH . K 7 HOH A 172 672 141 HOH HOH . K 7 HOH A 173 673 8 HOH HOH . K 7 HOH A 174 674 34 HOH HOH . K 7 HOH A 175 675 73 HOH HOH . K 7 HOH A 176 676 43 HOH HOH . K 7 HOH A 177 677 171 HOH HOH . K 7 HOH A 178 678 18 HOH HOH . K 7 HOH A 179 679 8 HOH HOH . K 7 HOH A 180 680 126 HOH HOH . K 7 HOH A 181 681 1 HOH HOH . K 7 HOH A 182 682 470 HOH HOH . K 7 HOH A 183 683 35 HOH HOH . K 7 HOH A 184 684 28 HOH HOH . K 7 HOH A 185 685 20 HOH HOH . K 7 HOH A 186 686 479 HOH HOH . K 7 HOH A 187 687 416 HOH HOH . K 7 HOH A 188 688 501 HOH HOH . K 7 HOH A 189 689 52 HOH HOH . K 7 HOH A 190 690 267 HOH HOH . K 7 HOH A 191 691 152 HOH HOH . K 7 HOH A 192 692 25 HOH HOH . K 7 HOH A 193 693 426 HOH HOH . K 7 HOH A 194 694 80 HOH HOH . K 7 HOH A 195 695 226 HOH HOH . K 7 HOH A 196 696 113 HOH HOH . K 7 HOH A 197 697 487 HOH HOH . K 7 HOH A 198 698 165 HOH HOH . K 7 HOH A 199 699 38 HOH HOH . K 7 HOH A 200 700 499 HOH HOH . K 7 HOH A 201 701 183 HOH HOH . K 7 HOH A 202 702 478 HOH HOH . K 7 HOH A 203 703 76 HOH HOH . K 7 HOH A 204 704 27 HOH HOH . K 7 HOH A 205 705 414 HOH HOH . K 7 HOH A 206 706 23 HOH HOH . K 7 HOH A 207 707 306 HOH HOH . K 7 HOH A 208 708 404 HOH HOH . K 7 HOH A 209 709 410 HOH HOH . K 7 HOH A 210 710 110 HOH HOH . K 7 HOH A 211 711 490 HOH HOH . K 7 HOH A 212 712 488 HOH HOH . K 7 HOH A 213 713 415 HOH HOH . K 7 HOH A 214 714 78 HOH HOH . K 7 HOH A 215 715 147 HOH HOH . K 7 HOH A 216 716 492 HOH HOH . K 7 HOH A 217 717 500 HOH HOH . K 7 HOH A 218 718 174 HOH HOH . K 7 HOH A 219 719 148 HOH HOH . K 7 HOH A 220 720 411 HOH HOH . K 7 HOH A 221 721 491 HOH HOH . K 7 HOH A 222 722 88 HOH HOH . K 7 HOH A 223 723 493 HOH HOH . K 7 HOH A 224 724 412 HOH HOH . K 7 HOH A 225 725 183 HOH HOH . K 7 HOH A 226 726 97 HOH HOH . K 7 HOH A 227 727 73 HOH HOH . K 7 HOH A 228 728 203 HOH HOH . K 7 HOH A 229 729 171 HOH HOH . K 7 HOH A 230 730 104 HOH HOH . K 7 HOH A 231 731 510 HOH HOH . K 7 HOH A 232 732 223 HOH HOH . K 7 HOH A 233 733 92 HOH HOH . K 7 HOH A 234 734 172 HOH HOH . K 7 HOH A 235 735 477 HOH HOH . K 7 HOH A 236 736 468 HOH HOH . K 7 HOH A 237 737 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 STV . . . B 2 50.279 115.188 32.195 0.4 30.83 ? C4 STV 401 A 1 HETATM 2 C C5 STV . . . B 2 50.188 116.143 33.2 0.4 30.56 ? C5 STV 401 A 1 HETATM 3 C C6 STV . . . B 2 51.27 116.962 33.355 0.4 30.2 ? C6 STV 401 A 1 HETATM 4 C C7 STV . . . B 2 52.418 116.836 32.543 0.4 30.16 ? C7 STV 401 A 1 HETATM 5 C C8 STV . . . B 2 52.524 115.891 31.533 0.4 30.42 ? C8 STV 401 A 1 HETATM 6 N N STV . . . B 2 52.439 113.735 29.438 0.4 34.59 ? N STV 401 A 1 HETATM 7 C C STV . . . B 2 54.507 113.346 27.103 0.4 36.69 ? C STV 401 A 1 HETATM 8 O O STV . . . B 2 51.638 113.976 27.098 0.4 36.23 ? O STV 401 A 1 HETATM 9 C C1 STV . . . B 2 53.515 112.306 27.427 0.4 35.14 ? C1 STV 401 A 1 HETATM 10 C C2 STV . . . B 2 51.28 113.991 30.329 0.4 34.33 ? C2 STV 401 A 1 HETATM 11 C C3 STV . . . B 2 51.393 115.059 31.38 0.4 32.1 ? C3 STV 401 A 1 HETATM 12 C C9 STV . . . B 2 52.723 118.525 33.995 0.4 29.63 ? C9 STV 401 A 1 HETATM 13 O O1 STV . . . B 2 51.31 111.868 28.308 0.4 38.44 ? O1 STV 401 A 1 HETATM 14 O O2 STV . . . B 2 53.331 117.78 32.93 0.4 28.99 ? O2 STV 401 A 1 HETATM 15 O O3 STV . . . B 2 51.439 117.983 34.267 0.4 29.46 ? O3 STV 401 A 1 HETATM 16 S S STV . . . B 2 52.126 112.998 28.001 0.4 35.21 ? S STV 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #