data_5R9W
#
_model_server_result.job_id            hZo8QE-_QLL7crM4nLC0-Q 
_model_server_result.datetime_utc      '2024-11-06 17:29:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5r9w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":409}' 
#
_entry.id    5R9W 
#
_exptl.entry_id    5R9W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5R9W 
_cell.length_a            46.133 
_cell.length_b            86.441 
_cell.length_c            126.976 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5R9W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 155 A ASN 155 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc2 A OD2 ASP 168 A ASP 168 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc3 H MG MG . A MG 407 1_555 K O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc4 H MG MG . A MG 407 1_555 K O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc5 H MG MG . A MG 407 1_555 K O HOH . A HOH 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     5R9W 
_atom_sites.fract_transf_matrix[1][1]    0.021676 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011569 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007876 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 STV A 1 401 401 STV LIG . 
C 3 CL A 1 402 3 CL CL . 
D 3 CL A 1 403 4 CL CL . 
E 3 CL A 1 404 5 CL CL . 
F 3 CL A 1 405 6 CL CL . 
G 3 CL A 1 406 7 CL CL . 
H 4 MG A 1 407 1 MG MG . 
I 5 SO4 A 1 408 1 SO4 SO4 . 
J 6 DMS A 1 409 1 DMS DMS . 
K 7 HOH A 1 501 180 HOH HOH . 
K 7 HOH A 2 502 422 HOH HOH . 
K 7 HOH A 3 503 506 HOH HOH . 
K 7 HOH A 4 504 480 HOH HOH . 
K 7 HOH A 5 505 152 HOH HOH . 
K 7 HOH A 6 506 186 HOH HOH . 
K 7 HOH A 7 507 100 HOH HOH . 
K 7 HOH A 8 508 122 HOH HOH . 
K 7 HOH A 9 509 168 HOH HOH . 
K 7 HOH A 10 510 30 HOH HOH . 
K 7 HOH A 11 511 16 HOH HOH . 
K 7 HOH A 12 512 24 HOH HOH . 
K 7 HOH A 13 513 25 HOH HOH . 
K 7 HOH A 14 514 120 HOH HOH . 
K 7 HOH A 15 515 138 HOH HOH . 
K 7 HOH A 16 516 43 HOH HOH . 
K 7 HOH A 17 517 178 HOH HOH . 
K 7 HOH A 18 518 14 HOH HOH . 
K 7 HOH A 19 519 90 HOH HOH . 
K 7 HOH A 20 520 123 HOH HOH . 
K 7 HOH A 21 521 6 HOH HOH . 
K 7 HOH A 22 522 7 HOH HOH . 
K 7 HOH A 23 523 71 HOH HOH . 
K 7 HOH A 24 524 16 HOH HOH . 
K 7 HOH A 25 525 56 HOH HOH . 
K 7 HOH A 26 526 44 HOH HOH . 
K 7 HOH A 27 527 64 HOH HOH . 
K 7 HOH A 28 528 236 HOH HOH . 
K 7 HOH A 29 529 64 HOH HOH . 
K 7 HOH A 30 530 508 HOH HOH . 
K 7 HOH A 31 531 2 HOH HOH . 
K 7 HOH A 32 532 95 HOH HOH . 
K 7 HOH A 33 533 79 HOH HOH . 
K 7 HOH A 34 534 133 HOH HOH . 
K 7 HOH A 35 535 24 HOH HOH . 
K 7 HOH A 36 536 209 HOH HOH . 
K 7 HOH A 37 537 160 HOH HOH . 
K 7 HOH A 38 538 69 HOH HOH . 
K 7 HOH A 39 539 194 HOH HOH . 
K 7 HOH A 40 540 60 HOH HOH . 
K 7 HOH A 41 541 50 HOH HOH . 
K 7 HOH A 42 542 409 HOH HOH . 
K 7 HOH A 43 543 107 HOH HOH . 
K 7 HOH A 44 544 38 HOH HOH . 
K 7 HOH A 45 545 29 HOH HOH . 
K 7 HOH A 46 546 472 HOH HOH . 
K 7 HOH A 47 547 134 HOH HOH . 
K 7 HOH A 48 548 300 HOH HOH . 
K 7 HOH A 49 549 91 HOH HOH . 
K 7 HOH A 50 550 117 HOH HOH . 
K 7 HOH A 51 551 239 HOH HOH . 
K 7 HOH A 52 552 273 HOH HOH . 
K 7 HOH A 53 553 15 HOH HOH . 
K 7 HOH A 54 554 507 HOH HOH . 
K 7 HOH A 55 555 504 HOH HOH . 
K 7 HOH A 56 556 74 HOH HOH . 
K 7 HOH A 57 557 121 HOH HOH . 
K 7 HOH A 58 558 17 HOH HOH . 
K 7 HOH A 59 559 22 HOH HOH . 
K 7 HOH A 60 560 68 HOH HOH . 
K 7 HOH A 61 561 5 HOH HOH . 
K 7 HOH A 62 562 59 HOH HOH . 
K 7 HOH A 63 563 103 HOH HOH . 
K 7 HOH A 64 564 75 HOH HOH . 
K 7 HOH A 65 565 58 HOH HOH . 
K 7 HOH A 66 566 13 HOH HOH . 
K 7 HOH A 67 567 96 HOH HOH . 
K 7 HOH A 68 568 3 HOH HOH . 
K 7 HOH A 69 569 72 HOH HOH . 
K 7 HOH A 70 570 47 HOH HOH . 
K 7 HOH A 71 571 99 HOH HOH . 
K 7 HOH A 72 572 474 HOH HOH . 
K 7 HOH A 73 573 33 HOH HOH . 
K 7 HOH A 74 574 114 HOH HOH . 
K 7 HOH A 75 575 9 HOH HOH . 
K 7 HOH A 76 576 117 HOH HOH . 
K 7 HOH A 77 577 23 HOH HOH . 
K 7 HOH A 78 578 15 HOH HOH . 
K 7 HOH A 79 579 89 HOH HOH . 
K 7 HOH A 80 580 41 HOH HOH . 
K 7 HOH A 81 581 2 HOH HOH . 
K 7 HOH A 82 582 192 HOH HOH . 
K 7 HOH A 83 583 172 HOH HOH . 
K 7 HOH A 84 584 502 HOH HOH . 
K 7 HOH A 85 585 42 HOH HOH . 
K 7 HOH A 86 586 2 HOH HOH . 
K 7 HOH A 87 587 48 HOH HOH . 
K 7 HOH A 88 588 175 HOH HOH . 
K 7 HOH A 89 589 1 HOH HOH . 
K 7 HOH A 90 590 144 HOH HOH . 
K 7 HOH A 91 591 32 HOH HOH . 
K 7 HOH A 92 592 484 HOH HOH . 
K 7 HOH A 93 593 26 HOH HOH . 
K 7 HOH A 94 594 482 HOH HOH . 
K 7 HOH A 95 595 9 HOH HOH . 
K 7 HOH A 96 596 237 HOH HOH . 
K 7 HOH A 97 597 105 HOH HOH . 
K 7 HOH A 98 598 119 HOH HOH . 
K 7 HOH A 99 599 46 HOH HOH . 
K 7 HOH A 100 600 33 HOH HOH . 
K 7 HOH A 101 601 475 HOH HOH . 
K 7 HOH A 102 602 22 HOH HOH . 
K 7 HOH A 103 603 476 HOH HOH . 
K 7 HOH A 104 604 34 HOH HOH . 
K 7 HOH A 105 605 20 HOH HOH . 
K 7 HOH A 106 606 254 HOH HOH . 
K 7 HOH A 107 607 39 HOH HOH . 
K 7 HOH A 108 608 111 HOH HOH . 
K 7 HOH A 109 609 486 HOH HOH . 
K 7 HOH A 110 610 125 HOH HOH . 
K 7 HOH A 111 611 12 HOH HOH . 
K 7 HOH A 112 612 76 HOH HOH . 
K 7 HOH A 113 613 51 HOH HOH . 
K 7 HOH A 114 614 11 HOH HOH . 
K 7 HOH A 115 615 207 HOH HOH . 
K 7 HOH A 116 616 67 HOH HOH . 
K 7 HOH A 117 617 70 HOH HOH . 
K 7 HOH A 118 618 98 HOH HOH . 
K 7 HOH A 119 619 93 HOH HOH . 
K 7 HOH A 120 620 85 HOH HOH . 
K 7 HOH A 121 621 174 HOH HOH . 
K 7 HOH A 122 622 187 HOH HOH . 
K 7 HOH A 123 623 62 HOH HOH . 
K 7 HOH A 124 624 6 HOH HOH . 
K 7 HOH A 125 625 36 HOH HOH . 
K 7 HOH A 126 626 129 HOH HOH . 
K 7 HOH A 127 627 45 HOH HOH . 
K 7 HOH A 128 628 12 HOH HOH . 
K 7 HOH A 129 629 183 HOH HOH . 
K 7 HOH A 130 630 86 HOH HOH . 
K 7 HOH A 131 631 108 HOH HOH . 
K 7 HOH A 132 632 116 HOH HOH . 
K 7 HOH A 133 633 84 HOH HOH . 
K 7 HOH A 134 634 417 HOH HOH . 
K 7 HOH A 135 635 140 HOH HOH . 
K 7 HOH A 136 636 27 HOH HOH . 
K 7 HOH A 137 637 471 HOH HOH . 
K 7 HOH A 138 638 127 HOH HOH . 
K 7 HOH A 139 639 49 HOH HOH . 
K 7 HOH A 140 640 37 HOH HOH . 
K 7 HOH A 141 641 21 HOH HOH . 
K 7 HOH A 142 642 35 HOH HOH . 
K 7 HOH A 143 643 406 HOH HOH . 
K 7 HOH A 144 644 86 HOH HOH . 
K 7 HOH A 145 645 244 HOH HOH . 
K 7 HOH A 146 646 66 HOH HOH . 
K 7 HOH A 147 647 115 HOH HOH . 
K 7 HOH A 148 648 37 HOH HOH . 
K 7 HOH A 149 649 481 HOH HOH . 
K 7 HOH A 150 650 65 HOH HOH . 
K 7 HOH A 151 651 509 HOH HOH . 
K 7 HOH A 152 652 18 HOH HOH . 
K 7 HOH A 153 653 55 HOH HOH . 
K 7 HOH A 154 654 30 HOH HOH . 
K 7 HOH A 155 655 505 HOH HOH . 
K 7 HOH A 156 656 31 HOH HOH . 
K 7 HOH A 157 657 135 HOH HOH . 
K 7 HOH A 158 658 59 HOH HOH . 
K 7 HOH A 159 659 421 HOH HOH . 
K 7 HOH A 160 660 511 HOH HOH . 
K 7 HOH A 161 661 44 HOH HOH . 
K 7 HOH A 162 662 145 HOH HOH . 
K 7 HOH A 163 663 15 HOH HOH . 
K 7 HOH A 164 664 5 HOH HOH . 
K 7 HOH A 165 665 210 HOH HOH . 
K 7 HOH A 166 666 23 HOH HOH . 
K 7 HOH A 167 667 37 HOH HOH . 
K 7 HOH A 168 668 193 HOH HOH . 
K 7 HOH A 169 669 23 HOH HOH . 
K 7 HOH A 170 670 155 HOH HOH . 
K 7 HOH A 171 671 283 HOH HOH . 
K 7 HOH A 172 672 141 HOH HOH . 
K 7 HOH A 173 673 8 HOH HOH . 
K 7 HOH A 174 674 34 HOH HOH . 
K 7 HOH A 175 675 73 HOH HOH . 
K 7 HOH A 176 676 43 HOH HOH . 
K 7 HOH A 177 677 171 HOH HOH . 
K 7 HOH A 178 678 18 HOH HOH . 
K 7 HOH A 179 679 8 HOH HOH . 
K 7 HOH A 180 680 126 HOH HOH . 
K 7 HOH A 181 681 1 HOH HOH . 
K 7 HOH A 182 682 470 HOH HOH . 
K 7 HOH A 183 683 35 HOH HOH . 
K 7 HOH A 184 684 28 HOH HOH . 
K 7 HOH A 185 685 20 HOH HOH . 
K 7 HOH A 186 686 479 HOH HOH . 
K 7 HOH A 187 687 416 HOH HOH . 
K 7 HOH A 188 688 501 HOH HOH . 
K 7 HOH A 189 689 52 HOH HOH . 
K 7 HOH A 190 690 267 HOH HOH . 
K 7 HOH A 191 691 152 HOH HOH . 
K 7 HOH A 192 692 25 HOH HOH . 
K 7 HOH A 193 693 426 HOH HOH . 
K 7 HOH A 194 694 80 HOH HOH . 
K 7 HOH A 195 695 226 HOH HOH . 
K 7 HOH A 196 696 113 HOH HOH . 
K 7 HOH A 197 697 487 HOH HOH . 
K 7 HOH A 198 698 165 HOH HOH . 
K 7 HOH A 199 699 38 HOH HOH . 
K 7 HOH A 200 700 499 HOH HOH . 
K 7 HOH A 201 701 183 HOH HOH . 
K 7 HOH A 202 702 478 HOH HOH . 
K 7 HOH A 203 703 76 HOH HOH . 
K 7 HOH A 204 704 27 HOH HOH . 
K 7 HOH A 205 705 414 HOH HOH . 
K 7 HOH A 206 706 23 HOH HOH . 
K 7 HOH A 207 707 306 HOH HOH . 
K 7 HOH A 208 708 404 HOH HOH . 
K 7 HOH A 209 709 410 HOH HOH . 
K 7 HOH A 210 710 110 HOH HOH . 
K 7 HOH A 211 711 490 HOH HOH . 
K 7 HOH A 212 712 488 HOH HOH . 
K 7 HOH A 213 713 415 HOH HOH . 
K 7 HOH A 214 714 78 HOH HOH . 
K 7 HOH A 215 715 147 HOH HOH . 
K 7 HOH A 216 716 492 HOH HOH . 
K 7 HOH A 217 717 500 HOH HOH . 
K 7 HOH A 218 718 174 HOH HOH . 
K 7 HOH A 219 719 148 HOH HOH . 
K 7 HOH A 220 720 411 HOH HOH . 
K 7 HOH A 221 721 491 HOH HOH . 
K 7 HOH A 222 722 88 HOH HOH . 
K 7 HOH A 223 723 493 HOH HOH . 
K 7 HOH A 224 724 412 HOH HOH . 
K 7 HOH A 225 725 183 HOH HOH . 
K 7 HOH A 226 726 97 HOH HOH . 
K 7 HOH A 227 727 73 HOH HOH . 
K 7 HOH A 228 728 203 HOH HOH . 
K 7 HOH A 229 729 171 HOH HOH . 
K 7 HOH A 230 730 104 HOH HOH . 
K 7 HOH A 231 731 510 HOH HOH . 
K 7 HOH A 232 732 223 HOH HOH . 
K 7 HOH A 233 733 92 HOH HOH . 
K 7 HOH A 234 734 172 HOH HOH . 
K 7 HOH A 235 735 477 HOH HOH . 
K 7 HOH A 236 736 468 HOH HOH . 
K 7 HOH A 237 737 235 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . J 6 65.614 118.666 21.878 1 86.48 ? S DMS 409 A 1 
HETATM 2 O O DMS . . . J 6 64.792 117.416 22.085 1 79.12 ? O DMS 409 A 1 
HETATM 3 C C1 DMS . . . J 6 64.484 120.032 21.755 1 73.92 ? C1 DMS 409 A 1 
HETATM 4 C C2 DMS . . . J 6 66.331 119.074 23.442 1 73.59 ? C2 DMS 409 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           56 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#