data_5RA0 # _model_server_result.job_id I11gk1xOCBwO5HkUO1e3rA _model_server_result.datetime_utc '2024-11-22 17:28:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ra0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5RA0 # _exptl.entry_id 5RA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 224.258 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-(1H-benzimidazol-1-yl)phenyl]methanol' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5RA0 _cell.length_a 45.95 _cell.length_b 87.04 _cell.length_c 126.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H12 N2 O' _chem_comp.formula_weight 224.258 _chem_comp.id JFS _chem_comp.mon_nstd_flag . _chem_comp.name '[4-(1H-benzimidazol-1-yl)phenyl]methanol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 N07 JFS doub 182 n y C08 N09 JFS sing 183 n y C15 C14 JFS doub 184 n y C15 C10 JFS sing 185 n y N07 C05 JFS sing 186 n y C14 C13 JFS sing 187 n y O17 C16 JFS sing 188 n n N09 C10 JFS sing 189 n n N09 C04 JFS sing 190 n y C10 C11 JFS doub 191 n y C05 C04 JFS doub 192 n y C05 C06 JFS sing 193 n y C13 C16 JFS sing 194 n n C13 C12 JFS doub 195 n y C04 C03 JFS sing 196 n y C06 C01 JFS doub 197 n y C11 C12 JFS sing 198 n y C03 C02 JFS doub 199 n y C01 C02 JFS sing 200 n y C15 H151 JFS sing 201 n n C01 H011 JFS sing 202 n n C02 H021 JFS sing 203 n n C03 H031 JFS sing 204 n n C06 H061 JFS sing 205 n n C08 H081 JFS sing 206 n n C11 H111 JFS sing 207 n n C12 H121 JFS sing 208 n n C14 H141 JFS sing 209 n n C16 H162 JFS sing 210 n n C16 H161 JFS sing 211 n n O17 H171 JFS sing 212 n n # _atom_sites.entry_id 5RA0 _atom_sites.fract_transf_matrix[1][1] 0.021763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JFS A 1 401 401 JFS LIG . C 3 CL A 1 402 3 CL CL . D 3 CL A 1 403 4 CL CL . E 3 CL A 1 404 5 CL CL . F 3 CL A 1 405 6 CL CL . G 3 CL A 1 406 7 CL CL . H 4 SO4 A 1 407 1 SO4 SO4 . I 5 DMS A 1 408 1 DMS DMS . J 6 HOH A 1 501 21 HOH HOH . J 6 HOH A 2 502 422 HOH HOH . J 6 HOH A 3 503 178 HOH HOH . J 6 HOH A 4 504 25 HOH HOH . J 6 HOH A 5 505 186 HOH HOH . J 6 HOH A 6 506 152 HOH HOH . J 6 HOH A 7 507 43 HOH HOH . J 6 HOH A 8 508 15 HOH HOH . J 6 HOH A 9 509 134 HOH HOH . J 6 HOH A 10 510 5 HOH HOH . J 6 HOH A 11 511 30 HOH HOH . J 6 HOH A 12 512 24 HOH HOH . J 6 HOH A 13 513 20 HOH HOH . J 6 HOH A 14 514 172 HOH HOH . J 6 HOH A 15 515 236 HOH HOH . J 6 HOH A 16 516 6 HOH HOH . J 6 HOH A 17 517 117 HOH HOH . J 6 HOH A 18 518 29 HOH HOH . J 6 HOH A 19 519 71 HOH HOH . J 6 HOH A 20 520 192 HOH HOH . J 6 HOH A 21 521 14 HOH HOH . J 6 HOH A 22 522 74 HOH HOH . J 6 HOH A 23 523 95 HOH HOH . J 6 HOH A 24 524 120 HOH HOH . J 6 HOH A 25 525 107 HOH HOH . J 6 HOH A 26 526 38 HOH HOH . J 6 HOH A 27 527 298 HOH HOH . J 6 HOH A 28 528 507 HOH HOH . J 6 HOH A 29 529 33 HOH HOH . J 6 HOH A 30 530 160 HOH HOH . J 6 HOH A 31 531 16 HOH HOH . J 6 HOH A 32 532 3 HOH HOH . J 6 HOH A 33 533 480 HOH HOH . J 6 HOH A 34 534 64 HOH HOH . J 6 HOH A 35 535 194 HOH HOH . J 6 HOH A 36 536 50 HOH HOH . J 6 HOH A 37 537 159 HOH HOH . J 6 HOH A 38 538 44 HOH HOH . J 6 HOH A 39 539 6 HOH HOH . J 6 HOH A 40 540 24 HOH HOH . J 6 HOH A 41 541 64 HOH HOH . J 6 HOH A 42 542 47 HOH HOH . J 6 HOH A 43 543 23 HOH HOH . J 6 HOH A 44 544 51 HOH HOH . J 6 HOH A 45 545 2 HOH HOH . J 6 HOH A 46 546 60 HOH HOH . J 6 HOH A 47 547 16 HOH HOH . J 6 HOH A 48 548 121 HOH HOH . J 6 HOH A 49 549 207 HOH HOH . J 6 HOH A 50 550 1 HOH HOH . J 6 HOH A 51 551 86 HOH HOH . J 6 HOH A 52 552 180 HOH HOH . J 6 HOH A 53 553 91 HOH HOH . J 6 HOH A 54 554 66 HOH HOH . J 6 HOH A 55 555 254 HOH HOH . J 6 HOH A 56 556 114 HOH HOH . J 6 HOH A 57 557 79 HOH HOH . J 6 HOH A 58 558 72 HOH HOH . J 6 HOH A 59 559 506 HOH HOH . J 6 HOH A 60 560 49 HOH HOH . J 6 HOH A 61 561 474 HOH HOH . J 6 HOH A 62 562 133 HOH HOH . J 6 HOH A 63 563 177 HOH HOH . J 6 HOH A 64 564 486 HOH HOH . J 6 HOH A 65 565 75 HOH HOH . J 6 HOH A 66 566 15 HOH HOH . J 6 HOH A 67 567 33 HOH HOH . J 6 HOH A 68 568 17 HOH HOH . J 6 HOH A 69 569 26 HOH HOH . J 6 HOH A 70 570 508 HOH HOH . J 6 HOH A 71 571 90 HOH HOH . J 6 HOH A 72 572 22 HOH HOH . J 6 HOH A 73 573 89 HOH HOH . J 6 HOH A 74 574 123 HOH HOH . J 6 HOH A 75 575 417 HOH HOH . J 6 HOH A 76 576 119 HOH HOH . J 6 HOH A 77 577 48 HOH HOH . J 6 HOH A 78 578 475 HOH HOH . J 6 HOH A 79 579 117 HOH HOH . J 6 HOH A 80 580 59 HOH HOH . J 6 HOH A 81 581 300 HOH HOH . J 6 HOH A 82 582 13 HOH HOH . J 6 HOH A 83 583 9 HOH HOH . J 6 HOH A 84 584 96 HOH HOH . J 6 HOH A 85 585 7 HOH HOH . J 6 HOH A 86 586 67 HOH HOH . J 6 HOH A 87 587 2 HOH HOH . J 6 HOH A 88 588 99 HOH HOH . J 6 HOH A 89 589 23 HOH HOH . J 6 HOH A 90 590 42 HOH HOH . J 6 HOH A 91 591 2 HOH HOH . J 6 HOH A 92 592 482 HOH HOH . J 6 HOH A 93 593 504 HOH HOH . J 6 HOH A 94 594 86 HOH HOH . J 6 HOH A 95 595 105 HOH HOH . J 6 HOH A 96 596 46 HOH HOH . J 6 HOH A 97 597 34 HOH HOH . J 6 HOH A 98 598 41 HOH HOH . J 6 HOH A 99 599 481 HOH HOH . J 6 HOH A 100 600 237 HOH HOH . J 6 HOH A 101 601 112 HOH HOH . J 6 HOH A 102 602 209 HOH HOH . J 6 HOH A 103 603 56 HOH HOH . J 6 HOH A 104 604 144 HOH HOH . J 6 HOH A 105 605 174 HOH HOH . J 6 HOH A 106 606 201 HOH HOH . J 6 HOH A 107 607 187 HOH HOH . J 6 HOH A 108 608 484 HOH HOH . J 6 HOH A 109 609 116 HOH HOH . J 6 HOH A 110 610 85 HOH HOH . J 6 HOH A 111 611 9 HOH HOH . J 6 HOH A 112 612 145 HOH HOH . J 6 HOH A 113 613 138 HOH HOH . J 6 HOH A 114 614 476 HOH HOH . J 6 HOH A 115 615 193 HOH HOH . J 6 HOH A 116 616 46 HOH HOH . J 6 HOH A 117 617 111 HOH HOH . J 6 HOH A 118 618 22 HOH HOH . J 6 HOH A 119 619 58 HOH HOH . J 6 HOH A 120 620 35 HOH HOH . J 6 HOH A 121 621 37 HOH HOH . J 6 HOH A 122 622 228 HOH HOH . J 6 HOH A 123 623 122 HOH HOH . J 6 HOH A 124 624 76 HOH HOH . J 6 HOH A 125 625 502 HOH HOH . J 6 HOH A 126 626 32 HOH HOH . J 6 HOH A 127 627 183 HOH HOH . J 6 HOH A 128 628 471 HOH HOH . J 6 HOH A 129 629 93 HOH HOH . J 6 HOH A 130 630 62 HOH HOH . J 6 HOH A 131 631 127 HOH HOH . J 6 HOH A 132 632 103 HOH HOH . J 6 HOH A 133 633 500 HOH HOH . J 6 HOH A 134 634 140 HOH HOH . J 6 HOH A 135 635 84 HOH HOH . J 6 HOH A 136 636 36 HOH HOH . J 6 HOH A 137 637 30 HOH HOH . J 6 HOH A 138 638 11 HOH HOH . J 6 HOH A 139 639 55 HOH HOH . J 6 HOH A 140 640 31 HOH HOH . J 6 HOH A 141 641 108 HOH HOH . J 6 HOH A 142 642 135 HOH HOH . J 6 HOH A 143 643 39 HOH HOH . J 6 HOH A 144 644 175 HOH HOH . J 6 HOH A 145 645 426 HOH HOH . J 6 HOH A 146 646 15 HOH HOH . J 6 HOH A 147 647 70 HOH HOH . J 6 HOH A 148 648 65 HOH HOH . J 6 HOH A 149 649 21 HOH HOH . J 6 HOH A 150 650 45 HOH HOH . J 6 HOH A 151 651 98 HOH HOH . J 6 HOH A 152 652 115 HOH HOH . J 6 HOH A 153 653 505 HOH HOH . J 6 HOH A 154 654 12 HOH HOH . J 6 HOH A 155 655 71 HOH HOH . J 6 HOH A 156 656 43 HOH HOH . J 6 HOH A 157 657 141 HOH HOH . J 6 HOH A 158 658 210 HOH HOH . J 6 HOH A 159 659 139 HOH HOH . J 6 HOH A 160 660 37 HOH HOH . J 6 HOH A 161 661 44 HOH HOH . J 6 HOH A 162 662 239 HOH HOH . J 6 HOH A 163 663 18 HOH HOH . J 6 HOH A 164 664 8 HOH HOH . J 6 HOH A 165 665 155 HOH HOH . J 6 HOH A 166 666 59 HOH HOH . J 6 HOH A 167 667 416 HOH HOH . J 6 HOH A 168 668 165 HOH HOH . J 6 HOH A 169 669 8 HOH HOH . J 6 HOH A 170 670 406 HOH HOH . J 6 HOH A 171 671 25 HOH HOH . J 6 HOH A 172 672 244 HOH HOH . J 6 HOH A 173 673 499 HOH HOH . J 6 HOH A 174 674 129 HOH HOH . J 6 HOH A 175 675 421 HOH HOH . J 6 HOH A 176 676 126 HOH HOH . J 6 HOH A 177 677 283 HOH HOH . J 6 HOH A 178 678 501 HOH HOH . J 6 HOH A 179 679 35 HOH HOH . J 6 HOH A 180 680 470 HOH HOH . J 6 HOH A 181 681 509 HOH HOH . J 6 HOH A 182 682 18 HOH HOH . J 6 HOH A 183 683 479 HOH HOH . J 6 HOH A 184 684 1 HOH HOH . J 6 HOH A 185 685 20 HOH HOH . J 6 HOH A 186 686 28 HOH HOH . J 6 HOH A 187 687 73 HOH HOH . J 6 HOH A 188 688 34 HOH HOH . J 6 HOH A 189 689 38 HOH HOH . J 6 HOH A 190 690 267 HOH HOH . J 6 HOH A 191 691 183 HOH HOH . J 6 HOH A 192 692 171 HOH HOH . J 6 HOH A 193 693 152 HOH HOH . J 6 HOH A 194 694 487 HOH HOH . J 6 HOH A 195 695 76 HOH HOH . J 6 HOH A 196 696 46 HOH HOH . J 6 HOH A 197 697 478 HOH HOH . J 6 HOH A 198 698 165 HOH HOH . J 6 HOH A 199 699 496 HOH HOH . J 6 HOH A 200 700 23 HOH HOH . J 6 HOH A 201 701 306 HOH HOH . J 6 HOH A 202 702 414 HOH HOH . J 6 HOH A 203 703 410 HOH HOH . J 6 HOH A 204 704 404 HOH HOH . J 6 HOH A 205 705 27 HOH HOH . J 6 HOH A 206 706 183 HOH HOH . J 6 HOH A 207 707 80 HOH HOH . J 6 HOH A 208 708 20 HOH HOH . J 6 HOH A 209 709 110 HOH HOH . J 6 HOH A 210 710 415 HOH HOH . J 6 HOH A 211 711 411 HOH HOH . J 6 HOH A 212 712 488 HOH HOH . J 6 HOH A 213 713 147 HOH HOH . J 6 HOH A 214 714 78 HOH HOH . J 6 HOH A 215 715 174 HOH HOH . J 6 HOH A 216 716 88 HOH HOH . J 6 HOH A 217 717 418 HOH HOH . J 6 HOH A 218 718 148 HOH HOH . J 6 HOH A 219 719 491 HOH HOH . J 6 HOH A 220 720 412 HOH HOH . J 6 HOH A 221 721 493 HOH HOH . J 6 HOH A 222 722 104 HOH HOH . J 6 HOH A 223 723 203 HOH HOH . J 6 HOH A 224 724 97 HOH HOH . J 6 HOH A 225 725 171 HOH HOH . J 6 HOH A 226 726 172 HOH HOH . J 6 HOH A 227 727 73 HOH HOH . J 6 HOH A 228 728 477 HOH HOH . J 6 HOH A 229 729 92 HOH HOH . J 6 HOH A 230 730 468 HOH HOH . J 6 HOH A 231 731 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JFS . . . B 2 49.075 118.864 31.957 0.54 23.67 ? C10 JFS 401 A 1 HETATM 2 C C13 JFS . . . B 2 51.164 117.171 31.198 0.54 23.79 ? C13 JFS 401 A 1 HETATM 3 C C15 JFS . . . B 2 48.798 117.758 31.167 0.54 23.6 ? C15 JFS 401 A 1 HETATM 4 C C01 JFS . . . B 2 44.708 120.122 34.665 0.54 22.62 ? C01 JFS 401 A 1 HETATM 5 C C02 JFS . . . B 2 45.333 118.838 34.649 0.54 22.7 ? C02 JFS 401 A 1 HETATM 6 C C03 JFS . . . B 2 46.479 118.61 33.922 0.54 22.74 ? C03 JFS 401 A 1 HETATM 7 C C04 JFS . . . B 2 46.994 119.693 33.191 0.54 23.12 ? C04 JFS 401 A 1 HETATM 8 C C05 JFS . . . B 2 46.375 120.972 33.204 0.54 22.41 ? C05 JFS 401 A 1 HETATM 9 C C06 JFS . . . B 2 45.218 121.191 33.952 0.54 22.53 ? C06 JFS 401 A 1 HETATM 10 N N07 JFS . . . B 2 47.074 121.866 32.363 0.54 23.11 ? N07 JFS 401 A 1 HETATM 11 C C08 JFS . . . B 2 48.074 121.171 31.853 0.54 22.19 ? C08 JFS 401 A 1 HETATM 12 N N09 JFS . . . B 2 48.087 119.825 32.323 0.54 23.53 ? N09 JFS 401 A 1 HETATM 13 C C11 JFS . . . B 2 50.377 119.112 32.382 0.54 24.94 ? C11 JFS 401 A 1 HETATM 14 C C12 JFS . . . B 2 51.412 118.265 31.994 0.54 25.15 ? C12 JFS 401 A 1 HETATM 15 C C14 JFS . . . B 2 49.847 116.917 30.794 0.54 24.99 ? C14 JFS 401 A 1 HETATM 16 C C16 JFS . . . B 2 52.31 116.271 30.755 0.54 24.85 ? C16 JFS 401 A 1 HETATM 17 O O17 JFS . . . B 2 52.199 115.028 31.414 0.54 23.82 ? O17 JFS 401 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #