data_5RA7 # _model_server_result.job_id ERoJq4HKXBtEBuVXd_qnUg _model_server_result.datetime_utc '2024-11-29 17:11:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ra7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 5RA7 # _exptl.entry_id 5RA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5RA7 _cell.length_a 45.741 _cell.length_b 85.818 _cell.length_c 124.747 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 150 A ASP 150 1_555 G MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc2 A OD2 ASP 168 A ASP 168 1_555 G MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc3 G MG MG . A MG 406 1_555 J O HOH . A HOH 643 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc4 G MG MG . A MG 406 1_555 J O HOH . A HOH 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5RA7 _atom_sites.fract_transf_matrix[1][1] 0.021862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SW7 A 1 401 401 SW7 LIG . C 3 CL A 1 402 3 CL CL . D 3 CL A 1 403 4 CL CL . E 3 CL A 1 404 6 CL CL . F 3 CL A 1 405 7 CL CL . G 4 MG A 1 406 1 MG MG . H 5 SO4 A 1 407 1 SO4 SO4 . I 6 DMS A 1 408 1 DMS DMS . J 7 HOH A 1 501 422 HOH HOH . J 7 HOH A 2 502 122 HOH HOH . J 7 HOH A 3 503 19 HOH HOH . J 7 HOH A 4 504 90 HOH HOH . J 7 HOH A 5 505 95 HOH HOH . J 7 HOH A 6 506 79 HOH HOH . J 7 HOH A 7 507 480 HOH HOH . J 7 HOH A 8 508 44 HOH HOH . J 7 HOH A 9 509 14 HOH HOH . J 7 HOH A 10 510 71 HOH HOH . J 7 HOH A 11 511 38 HOH HOH . J 7 HOH A 12 512 152 HOH HOH . J 7 HOH A 13 513 29 HOH HOH . J 7 HOH A 14 514 43 HOH HOH . J 7 HOH A 15 515 165 HOH HOH . J 7 HOH A 16 516 33 HOH HOH . J 7 HOH A 17 517 16 HOH HOH . J 7 HOH A 18 518 483 HOH HOH . J 7 HOH A 19 519 2 HOH HOH . J 7 HOH A 20 520 60 HOH HOH . J 7 HOH A 21 521 123 HOH HOH . J 7 HOH A 22 522 89 HOH HOH . J 7 HOH A 23 523 17 HOH HOH . J 7 HOH A 24 524 86 HOH HOH . J 7 HOH A 25 525 16 HOH HOH . J 7 HOH A 26 526 47 HOH HOH . J 7 HOH A 27 527 61 HOH HOH . J 7 HOH A 28 528 5 HOH HOH . J 7 HOH A 29 529 103 HOH HOH . J 7 HOH A 30 530 484 HOH HOH . J 7 HOH A 31 531 68 HOH HOH . J 7 HOH A 32 532 12 HOH HOH . J 7 HOH A 33 533 96 HOH HOH . J 7 HOH A 34 534 13 HOH HOH . J 7 HOH A 35 535 119 HOH HOH . J 7 HOH A 36 536 192 HOH HOH . J 7 HOH A 37 537 114 HOH HOH . J 7 HOH A 38 538 50 HOH HOH . J 7 HOH A 39 539 52 HOH HOH . J 7 HOH A 40 540 15 HOH HOH . J 7 HOH A 41 541 409 HOH HOH . J 7 HOH A 42 542 175 HOH HOH . J 7 HOH A 43 543 108 HOH HOH . J 7 HOH A 44 544 42 HOH HOH . J 7 HOH A 45 545 300 HOH HOH . J 7 HOH A 46 546 390 HOH HOH . J 7 HOH A 47 547 15 HOH HOH . J 7 HOH A 48 548 127 HOH HOH . J 7 HOH A 49 549 91 HOH HOH . J 7 HOH A 50 550 1 HOH HOH . J 7 HOH A 51 551 121 HOH HOH . J 7 HOH A 52 552 236 HOH HOH . J 7 HOH A 53 553 48 HOH HOH . J 7 HOH A 54 554 508 HOH HOH . J 7 HOH A 55 555 32 HOH HOH . J 7 HOH A 56 556 69 HOH HOH . J 7 HOH A 57 557 41 HOH HOH . J 7 HOH A 58 558 68 HOH HOH . J 7 HOH A 59 559 26 HOH HOH . J 7 HOH A 60 560 72 HOH HOH . J 7 HOH A 61 561 9 HOH HOH . J 7 HOH A 62 562 6 HOH HOH . J 7 HOH A 63 563 76 HOH HOH . J 7 HOH A 64 564 474 HOH HOH . J 7 HOH A 65 565 201 HOH HOH . J 7 HOH A 66 566 75 HOH HOH . J 7 HOH A 67 567 172 HOH HOH . J 7 HOH A 68 568 2 HOH HOH . J 7 HOH A 69 569 70 HOH HOH . J 7 HOH A 70 570 74 HOH HOH . J 7 HOH A 71 571 107 HOH HOH . J 7 HOH A 72 572 237 HOH HOH . J 7 HOH A 73 573 132 HOH HOH . J 7 HOH A 74 574 187 HOH HOH . J 7 HOH A 75 575 2 HOH HOH . J 7 HOH A 76 576 46 HOH HOH . J 7 HOH A 77 577 417 HOH HOH . J 7 HOH A 78 578 99 HOH HOH . J 7 HOH A 79 579 98 HOH HOH . J 7 HOH A 80 580 136 HOH HOH . J 7 HOH A 81 581 105 HOH HOH . J 7 HOH A 82 582 228 HOH HOH . J 7 HOH A 83 583 86 HOH HOH . J 7 HOH A 84 584 51 HOH HOH . J 7 HOH A 85 585 482 HOH HOH . J 7 HOH A 86 586 34 HOH HOH . J 7 HOH A 87 587 58 HOH HOH . J 7 HOH A 88 588 116 HOH HOH . J 7 HOH A 89 589 37 HOH HOH . J 7 HOH A 90 590 476 HOH HOH . J 7 HOH A 91 591 3 HOH HOH . J 7 HOH A 92 592 481 HOH HOH . J 7 HOH A 93 593 475 HOH HOH . J 7 HOH A 94 594 66 HOH HOH . J 7 HOH A 95 595 244 HOH HOH . J 7 HOH A 96 596 502 HOH HOH . J 7 HOH A 97 597 22 HOH HOH . J 7 HOH A 98 598 62 HOH HOH . J 7 HOH A 99 599 93 HOH HOH . J 7 HOH A 100 600 85 HOH HOH . J 7 HOH A 101 601 416 HOH HOH . J 7 HOH A 102 602 144 HOH HOH . J 7 HOH A 103 603 134 HOH HOH . J 7 HOH A 104 604 11 HOH HOH . J 7 HOH A 105 605 406 HOH HOH . J 7 HOH A 106 606 49 HOH HOH . J 7 HOH A 107 607 67 HOH HOH . J 7 HOH A 108 608 193 HOH HOH . J 7 HOH A 109 609 8 HOH HOH . J 7 HOH A 110 610 64 HOH HOH . J 7 HOH A 111 611 183 HOH HOH . J 7 HOH A 112 612 37 HOH HOH . J 7 HOH A 113 613 426 HOH HOH . J 7 HOH A 114 614 45 HOH HOH . J 7 HOH A 115 615 283 HOH HOH . J 7 HOH A 116 616 23 HOH HOH . J 7 HOH A 117 617 174 HOH HOH . J 7 HOH A 118 618 20 HOH HOH . J 7 HOH A 119 619 155 HOH HOH . J 7 HOH A 120 620 111 HOH HOH . J 7 HOH A 121 621 73 HOH HOH . J 7 HOH A 122 622 140 HOH HOH . J 7 HOH A 123 623 65 HOH HOH . J 7 HOH A 124 624 8 HOH HOH . J 7 HOH A 125 625 43 HOH HOH . J 7 HOH A 126 626 21 HOH HOH . J 7 HOH A 127 627 31 HOH HOH . J 7 HOH A 128 628 35 HOH HOH . J 7 HOH A 129 629 55 HOH HOH . J 7 HOH A 130 630 486 HOH HOH . J 7 HOH A 131 631 59 HOH HOH . J 7 HOH A 132 632 36 HOH HOH . J 7 HOH A 133 633 505 HOH HOH . J 7 HOH A 134 634 15 HOH HOH . J 7 HOH A 135 635 171 HOH HOH . J 7 HOH A 136 636 44 HOH HOH . J 7 HOH A 137 637 135 HOH HOH . J 7 HOH A 138 638 512 HOH HOH . J 7 HOH A 139 639 129 HOH HOH . J 7 HOH A 140 640 27 HOH HOH . J 7 HOH A 141 641 5 HOH HOH . J 7 HOH A 142 642 141 HOH HOH . J 7 HOH A 143 643 511 HOH HOH . J 7 HOH A 144 644 421 HOH HOH . J 7 HOH A 145 645 18 HOH HOH . J 7 HOH A 146 646 39 HOH HOH . J 7 HOH A 147 647 210 HOH HOH . J 7 HOH A 148 648 35 HOH HOH . J 7 HOH A 149 649 28 HOH HOH . J 7 HOH A 150 650 226 HOH HOH . J 7 HOH A 151 651 267 HOH HOH . J 7 HOH A 152 652 126 HOH HOH . J 7 HOH A 153 653 479 HOH HOH . J 7 HOH A 154 654 1 HOH HOH . J 7 HOH A 155 655 152 HOH HOH . J 7 HOH A 156 656 34 HOH HOH . J 7 HOH A 157 657 470 HOH HOH . J 7 HOH A 158 658 27 HOH HOH . J 7 HOH A 159 659 487 HOH HOH . J 7 HOH A 160 660 478 HOH HOH . J 7 HOH A 161 661 183 HOH HOH . J 7 HOH A 162 662 38 HOH HOH . J 7 HOH A 163 663 404 HOH HOH . J 7 HOH A 164 664 488 HOH HOH . J 7 HOH A 165 665 23 HOH HOH . J 7 HOH A 166 666 78 HOH HOH . J 7 HOH A 167 667 113 HOH HOH . J 7 HOH A 168 668 492 HOH HOH . J 7 HOH A 169 669 491 HOH HOH . J 7 HOH A 170 670 183 HOH HOH . J 7 HOH A 171 671 490 HOH HOH . J 7 HOH A 172 672 147 HOH HOH . J 7 HOH A 173 673 415 HOH HOH . J 7 HOH A 174 674 148 HOH HOH . J 7 HOH A 175 675 174 HOH HOH . J 7 HOH A 176 676 411 HOH HOH . J 7 HOH A 177 677 88 HOH HOH . J 7 HOH A 178 678 50 HOH HOH . J 7 HOH A 179 679 510 HOH HOH . J 7 HOH A 180 680 493 HOH HOH . J 7 HOH A 181 681 171 HOH HOH . J 7 HOH A 182 682 73 HOH HOH . J 7 HOH A 183 683 412 HOH HOH . J 7 HOH A 184 684 97 HOH HOH . J 7 HOH A 185 685 477 HOH HOH . J 7 HOH A 186 686 172 HOH HOH . J 7 HOH A 187 687 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 6 70.832 115.465 22.845 1 111.92 ? S DMS 408 A 1 HETATM 2 O O DMS . . . I 6 70.565 115.628 24.317 1 112.94 ? O DMS 408 A 1 HETATM 3 C C1 DMS . . . I 6 71.173 117.09 22.19 1 107.19 ? C1 DMS 408 A 1 HETATM 4 C C2 DMS . . . I 6 72.453 114.737 22.716 1 122.3 ? C2 DMS 408 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #