data_5RBO # _model_server_result.job_id rFPV-AYTNhHQeRxz8pWYHQ _model_server_result.datetime_utc '2024-10-19 13:18:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5RBO # _exptl.entry_id 5RBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.98 _cell.angle_gamma 90 _cell.entry_id 5RBO _cell.length_a 45.215 _cell.length_b 73.139 _cell.length_c 52.587 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 379 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id B _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.062 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 144 n n C1 C2 GOL sing 145 n n C1 H11 GOL sing 146 n n C1 H12 GOL sing 147 n n O1 HO1 GOL sing 148 n n C2 O2 GOL sing 149 n n C2 C3 GOL sing 150 n n C2 H2 GOL sing 151 n n O2 HO2 GOL sing 152 n n C3 O3 GOL sing 153 n n C3 H31 GOL sing 154 n n C3 H32 GOL sing 155 n n O3 HO3 GOL sing 156 n n # _atom_sites.entry_id 5RBO _atom_sites.fract_transf_matrix[1][1] 0.022117 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007608 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R8A A 1 401 401 R8A XXX . C 3 DMS A 1 402 501 DMS DMS . D 4 GOL A 1 403 402 GOL GOL . E 5 ACT A 1 404 405 ACT ACT . F 6 PG4 A 1 405 407 PG4 PG4 . G 7 HOH A 1 501 95 HOH HOH . G 7 HOH A 2 502 198 HOH HOH . G 7 HOH A 3 503 113 HOH HOH . G 7 HOH A 4 504 52 HOH HOH . G 7 HOH A 5 505 181 HOH HOH . G 7 HOH A 6 506 27 HOH HOH . G 7 HOH A 7 507 110 HOH HOH . G 7 HOH A 8 508 96 HOH HOH . G 7 HOH A 9 509 211 HOH HOH . G 7 HOH A 10 510 92 HOH HOH . G 7 HOH A 11 511 206 HOH HOH . G 7 HOH A 12 512 172 HOH HOH . G 7 HOH A 13 513 204 HOH HOH . G 7 HOH A 14 514 15 HOH HOH . G 7 HOH A 15 515 141 HOH HOH . G 7 HOH A 16 516 208 HOH HOH . G 7 HOH A 17 517 21 HOH HOH . G 7 HOH A 18 518 161 HOH HOH . G 7 HOH A 19 519 51 HOH HOH . G 7 HOH A 20 520 151 HOH HOH . G 7 HOH A 21 521 65 HOH HOH . G 7 HOH A 22 522 135 HOH HOH . G 7 HOH A 23 523 118 HOH HOH . G 7 HOH A 24 524 16 HOH HOH . G 7 HOH A 25 525 133 HOH HOH . G 7 HOH A 26 526 50 HOH HOH . G 7 HOH A 27 527 196 HOH HOH . G 7 HOH A 28 528 165 HOH HOH . G 7 HOH A 29 529 143 HOH HOH . G 7 HOH A 30 530 22 HOH HOH . G 7 HOH A 31 531 82 HOH HOH . G 7 HOH A 32 532 81 HOH HOH . G 7 HOH A 33 533 193 HOH HOH . G 7 HOH A 34 534 114 HOH HOH . G 7 HOH A 35 535 155 HOH HOH . G 7 HOH A 36 536 163 HOH HOH . G 7 HOH A 37 537 156 HOH HOH . G 7 HOH A 38 538 56 HOH HOH . G 7 HOH A 39 539 6 HOH HOH . G 7 HOH A 40 540 40 HOH HOH . G 7 HOH A 41 541 107 HOH HOH . G 7 HOH A 42 542 200 HOH HOH . G 7 HOH A 43 543 14 HOH HOH . G 7 HOH A 44 544 58 HOH HOH . G 7 HOH A 45 545 153 HOH HOH . G 7 HOH A 46 546 210 HOH HOH . G 7 HOH A 47 547 30 HOH HOH . G 7 HOH A 48 548 69 HOH HOH . G 7 HOH A 49 549 3 HOH HOH . G 7 HOH A 50 550 61 HOH HOH . G 7 HOH A 51 551 34 HOH HOH . G 7 HOH A 52 552 49 HOH HOH . G 7 HOH A 53 553 23 HOH HOH . G 7 HOH A 54 554 218 HOH HOH . G 7 HOH A 55 555 139 HOH HOH . G 7 HOH A 56 556 48 HOH HOH . G 7 HOH A 57 557 178 HOH HOH . G 7 HOH A 58 558 33 HOH HOH . G 7 HOH A 59 559 66 HOH HOH . G 7 HOH A 60 560 142 HOH HOH . G 7 HOH A 61 561 74 HOH HOH . G 7 HOH A 62 562 197 HOH HOH . G 7 HOH A 63 563 53 HOH HOH . G 7 HOH A 64 564 4 HOH HOH . G 7 HOH A 65 565 128 HOH HOH . G 7 HOH A 66 566 90 HOH HOH . G 7 HOH A 67 567 125 HOH HOH . G 7 HOH A 68 568 149 HOH HOH . G 7 HOH A 69 569 25 HOH HOH . G 7 HOH A 70 570 78 HOH HOH . G 7 HOH A 71 571 80 HOH HOH . G 7 HOH A 72 572 28 HOH HOH . G 7 HOH A 73 573 43 HOH HOH . G 7 HOH A 74 574 162 HOH HOH . G 7 HOH A 75 575 20 HOH HOH . G 7 HOH A 76 576 77 HOH HOH . G 7 HOH A 77 577 70 HOH HOH . G 7 HOH A 78 578 17 HOH HOH . G 7 HOH A 79 579 185 HOH HOH . G 7 HOH A 80 580 2 HOH HOH . G 7 HOH A 81 581 117 HOH HOH . G 7 HOH A 82 582 8 HOH HOH . G 7 HOH A 83 583 140 HOH HOH . G 7 HOH A 84 584 10 HOH HOH . G 7 HOH A 85 585 126 HOH HOH . G 7 HOH A 86 586 55 HOH HOH . G 7 HOH A 87 587 180 HOH HOH . G 7 HOH A 88 588 104 HOH HOH . G 7 HOH A 89 589 124 HOH HOH . G 7 HOH A 90 590 213 HOH HOH . G 7 HOH A 91 591 7 HOH HOH . G 7 HOH A 92 592 150 HOH HOH . G 7 HOH A 93 593 179 HOH HOH . G 7 HOH A 94 594 87 HOH HOH . G 7 HOH A 95 595 44 HOH HOH . G 7 HOH A 96 596 93 HOH HOH . G 7 HOH A 97 597 24 HOH HOH . G 7 HOH A 98 598 5 HOH HOH . G 7 HOH A 99 599 138 HOH HOH . G 7 HOH A 100 600 154 HOH HOH . G 7 HOH A 101 601 18 HOH HOH . G 7 HOH A 102 602 88 HOH HOH . G 7 HOH A 103 603 46 HOH HOH . G 7 HOH A 104 604 32 HOH HOH . G 7 HOH A 105 605 12 HOH HOH . G 7 HOH A 106 606 212 HOH HOH . G 7 HOH A 107 607 60 HOH HOH . G 7 HOH A 108 608 148 HOH HOH . G 7 HOH A 109 609 13 HOH HOH . G 7 HOH A 110 610 159 HOH HOH . G 7 HOH A 111 611 89 HOH HOH . G 7 HOH A 112 612 68 HOH HOH . G 7 HOH A 113 613 158 HOH HOH . G 7 HOH A 114 614 19 HOH HOH . G 7 HOH A 115 615 157 HOH HOH . G 7 HOH A 116 616 164 HOH HOH . G 7 HOH A 117 617 99 HOH HOH . G 7 HOH A 118 618 147 HOH HOH . G 7 HOH A 119 619 108 HOH HOH . G 7 HOH A 120 620 111 HOH HOH . G 7 HOH A 121 621 105 HOH HOH . G 7 HOH A 122 622 176 HOH HOH . G 7 HOH A 123 623 54 HOH HOH . G 7 HOH A 124 624 199 HOH HOH . G 7 HOH A 125 625 72 HOH HOH . G 7 HOH A 126 626 152 HOH HOH . G 7 HOH A 127 627 171 HOH HOH . G 7 HOH A 128 628 67 HOH HOH . G 7 HOH A 129 629 168 HOH HOH . G 7 HOH A 130 630 209 HOH HOH . G 7 HOH A 131 631 177 HOH HOH . G 7 HOH A 132 632 130 HOH HOH . G 7 HOH A 133 633 86 HOH HOH . G 7 HOH A 134 634 9 HOH HOH . G 7 HOH A 135 635 41 HOH HOH . G 7 HOH A 136 636 97 HOH HOH . G 7 HOH A 137 637 91 HOH HOH . G 7 HOH A 138 638 214 HOH HOH . G 7 HOH A 139 639 59 HOH HOH . G 7 HOH A 140 640 102 HOH HOH . G 7 HOH A 141 641 188 HOH HOH . G 7 HOH A 142 642 119 HOH HOH . G 7 HOH A 143 643 47 HOH HOH . G 7 HOH A 144 644 202 HOH HOH . G 7 HOH A 145 645 36 HOH HOH . G 7 HOH A 146 646 76 HOH HOH . G 7 HOH A 147 647 145 HOH HOH . G 7 HOH A 148 648 75 HOH HOH . G 7 HOH A 149 649 26 HOH HOH . G 7 HOH A 150 650 35 HOH HOH . G 7 HOH A 151 651 83 HOH HOH . G 7 HOH A 152 652 39 HOH HOH . G 7 HOH A 153 653 106 HOH HOH . G 7 HOH A 154 654 120 HOH HOH . G 7 HOH A 155 655 134 HOH HOH . G 7 HOH A 156 656 45 HOH HOH . G 7 HOH A 157 657 38 HOH HOH . G 7 HOH A 158 658 174 HOH HOH . G 7 HOH A 159 659 187 HOH HOH . G 7 HOH A 160 660 101 HOH HOH . G 7 HOH A 161 661 100 HOH HOH . G 7 HOH A 162 662 62 HOH HOH . G 7 HOH A 163 663 98 HOH HOH . G 7 HOH A 164 664 94 HOH HOH . G 7 HOH A 165 665 29 HOH HOH . G 7 HOH A 166 666 136 HOH HOH . G 7 HOH A 167 667 57 HOH HOH . G 7 HOH A 168 668 122 HOH HOH . G 7 HOH A 169 669 137 HOH HOH . G 7 HOH A 170 670 207 HOH HOH . G 7 HOH A 171 671 167 HOH HOH . G 7 HOH A 172 672 109 HOH HOH . G 7 HOH A 173 673 215 HOH HOH . G 7 HOH A 174 674 63 HOH HOH . G 7 HOH A 175 675 115 HOH HOH . G 7 HOH A 176 676 42 HOH HOH . G 7 HOH A 177 677 216 HOH HOH . G 7 HOH A 178 678 195 HOH HOH . G 7 HOH A 179 679 64 HOH HOH . G 7 HOH A 180 680 85 HOH HOH . G 7 HOH A 181 681 146 HOH HOH . G 7 HOH A 182 682 71 HOH HOH . G 7 HOH A 183 683 169 HOH HOH . G 7 HOH A 184 684 116 HOH HOH . G 7 HOH A 185 685 31 HOH HOH . G 7 HOH A 186 686 190 HOH HOH . G 7 HOH A 187 687 112 HOH HOH . G 7 HOH A 188 688 173 HOH HOH . G 7 HOH A 189 689 183 HOH HOH . G 7 HOH A 190 690 191 HOH HOH . G 7 HOH A 191 691 129 HOH HOH . G 7 HOH A 192 692 189 HOH HOH . G 7 HOH A 193 693 217 HOH HOH . G 7 HOH A 194 694 194 HOH HOH . G 7 HOH A 195 695 84 HOH HOH . G 7 HOH A 196 696 121 HOH HOH . G 7 HOH A 197 697 73 HOH HOH . G 7 HOH A 198 698 123 HOH HOH . G 7 HOH A 199 699 160 HOH HOH . G 7 HOH A 200 700 103 HOH HOH . G 7 HOH A 201 701 132 HOH HOH . G 7 HOH A 202 702 127 HOH HOH . G 7 HOH A 203 703 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . D 4 29.581 18.493 49.466 0.32 19.65 ? C1 GOL 403 A 1 HETATM 2 C C1 GOL . B . D 4 28.864 18.929 50.275 0.14 12.81 ? C1 GOL 403 A 1 HETATM 3 O O1 GOL . A . D 4 29.451 19.717 48.746 0.32 15.94 ? O1 GOL 403 A 1 HETATM 4 O O1 GOL . B . D 4 27.893 18.024 49.77 0.14 10.86 ? O1 GOL 403 A 1 HETATM 5 C C2 GOL . A . D 4 30.11 18.748 50.854 0.32 21.68 ? C2 GOL 403 A 1 HETATM 6 C C2 GOL . B . D 4 30.166 18.216 50.515 0.14 12.9 ? C2 GOL 403 A 1 HETATM 7 O O2 GOL . A . D 4 29.191 19.553 51.588 0.32 24.33 ? O2 GOL 403 A 1 HETATM 8 O O2 GOL . B . D 4 31.23 19.159 50.648 0.14 12.98 ? O2 GOL 403 A 1 HETATM 9 C C3 GOL . A . D 4 30.378 17.469 51.614 0.32 21.51 ? C3 GOL 403 A 1 HETATM 10 C C3 GOL . B . D 4 30.097 17.353 51.75 0.14 12.55 ? C3 GOL 403 A 1 HETATM 11 O O3 GOL . A . D 4 29.162 16.875 52.046 0.32 23.85 ? O3 GOL 403 A 1 HETATM 12 O O3 GOL . B . D 4 28.863 17.543 52.435 0.14 13.16 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #