data_5RBQ # _model_server_result.job_id TZqd6IKA0eOCIWDeGPhz2Q _model_server_result.datetime_utc '2024-11-27 06:10:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":411}' # _entry.id 5RBQ # _exptl.entry_id 5RBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.02 _cell.angle_gamma 90 _cell.entry_id 5RBQ _cell.length_a 45.058 _cell.length_b 73.496 _cell.length_c 52.116 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc1 L O1 PG4 . A PG4 411 1_555 M NA NA . A NA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc2 L O2 PG4 . A PG4 411 1_555 M NA NA . A NA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc3 L O3 PG4 . A PG4 411 1_555 M NA NA . A NA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.136 ? metalc ? metalc4 L O4 PG4 . A PG4 411 1_555 M NA NA . A NA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.119 ? metalc ? metalc5 L O5 PG4 . A PG4 411 1_555 M NA NA . A NA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 265 n n O1 HO1 PG4 sing 266 n n C1 C2 PG4 sing 267 n n C1 H11 PG4 sing 268 n n C1 H12 PG4 sing 269 n n C2 O2 PG4 sing 270 n n C2 H21 PG4 sing 271 n n C2 H22 PG4 sing 272 n n O2 C3 PG4 sing 273 n n C3 C4 PG4 sing 274 n n C3 H31 PG4 sing 275 n n C3 H32 PG4 sing 276 n n C4 O3 PG4 sing 277 n n C4 H41 PG4 sing 278 n n C4 H42 PG4 sing 279 n n O3 C5 PG4 sing 280 n n C5 C6 PG4 sing 281 n n C5 H51 PG4 sing 282 n n C5 H52 PG4 sing 283 n n C6 O4 PG4 sing 284 n n C6 H61 PG4 sing 285 n n C6 H62 PG4 sing 286 n n O4 C7 PG4 sing 287 n n C7 C8 PG4 sing 288 n n C7 H71 PG4 sing 289 n n C7 H72 PG4 sing 290 n n C8 O5 PG4 sing 291 n n C8 H81 PG4 sing 292 n n C8 H82 PG4 sing 293 n n O5 HO5 PG4 sing 294 n n # _atom_sites.entry_id 5RBQ _atom_sites.fract_transf_matrix[1][1] 0.022194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007652 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R8P A 1 401 401 R8P XXX . C 3 DMS A 1 402 501 DMS DMS . D 3 DMS A 1 403 601 DMS DMS . E 4 GOL A 1 404 701 GOL GOL . F 3 DMS A 1 405 801 DMS DMS . G 4 GOL A 1 406 1001 GOL GOL . H 4 GOL A 1 407 401 GOL GOL . I 4 GOL A 1 408 402 GOL GOL . J 4 GOL A 1 409 403 GOL GOL . K 5 ACT A 1 410 405 ACT ACT . L 6 PG4 A 1 411 407 PG4 PG4 . M 7 NA A 1 412 408 NA NA . N 8 HOH A 1 501 102 HOH HOH . N 8 HOH A 2 502 129 HOH HOH . N 8 HOH A 3 503 237 HOH HOH . N 8 HOH A 4 504 125 HOH HOH . N 8 HOH A 5 505 246 HOH HOH . N 8 HOH A 6 506 151 HOH HOH . N 8 HOH A 7 507 245 HOH HOH . N 8 HOH A 8 508 251 HOH HOH . N 8 HOH A 9 509 121 HOH HOH . N 8 HOH A 10 510 58 HOH HOH . N 8 HOH A 11 511 165 HOH HOH . N 8 HOH A 12 512 91 HOH HOH . N 8 HOH A 13 513 244 HOH HOH . N 8 HOH A 14 514 203 HOH HOH . N 8 HOH A 15 515 229 HOH HOH . N 8 HOH A 16 516 195 HOH HOH . N 8 HOH A 17 517 141 HOH HOH . N 8 HOH A 18 518 173 HOH HOH . N 8 HOH A 19 519 208 HOH HOH . N 8 HOH A 20 520 103 HOH HOH . N 8 HOH A 21 521 240 HOH HOH . N 8 HOH A 22 522 161 HOH HOH . N 8 HOH A 23 523 171 HOH HOH . N 8 HOH A 24 524 225 HOH HOH . N 8 HOH A 25 525 231 HOH HOH . N 8 HOH A 26 526 111 HOH HOH . N 8 HOH A 27 527 50 HOH HOH . N 8 HOH A 28 528 178 HOH HOH . N 8 HOH A 29 529 69 HOH HOH . N 8 HOH A 30 530 138 HOH HOH . N 8 HOH A 31 531 172 HOH HOH . N 8 HOH A 32 532 27 HOH HOH . N 8 HOH A 33 533 26 HOH HOH . N 8 HOH A 34 534 98 HOH HOH . N 8 HOH A 35 535 13 HOH HOH . N 8 HOH A 36 536 236 HOH HOH . N 8 HOH A 37 537 40 HOH HOH . N 8 HOH A 38 538 168 HOH HOH . N 8 HOH A 39 539 176 HOH HOH . N 8 HOH A 40 540 82 HOH HOH . N 8 HOH A 41 541 28 HOH HOH . N 8 HOH A 42 542 215 HOH HOH . N 8 HOH A 43 543 126 HOH HOH . N 8 HOH A 44 544 158 HOH HOH . N 8 HOH A 45 545 8 HOH HOH . N 8 HOH A 46 546 2 HOH HOH . N 8 HOH A 47 547 224 HOH HOH . N 8 HOH A 48 548 115 HOH HOH . N 8 HOH A 49 549 15 HOH HOH . N 8 HOH A 50 550 157 HOH HOH . N 8 HOH A 51 551 16 HOH HOH . N 8 HOH A 52 552 3 HOH HOH . N 8 HOH A 53 553 33 HOH HOH . N 8 HOH A 54 554 81 HOH HOH . N 8 HOH A 55 555 10 HOH HOH . N 8 HOH A 56 556 56 HOH HOH . N 8 HOH A 57 557 177 HOH HOH . N 8 HOH A 58 558 57 HOH HOH . N 8 HOH A 59 559 150 HOH HOH . N 8 HOH A 60 560 197 HOH HOH . N 8 HOH A 61 561 19 HOH HOH . N 8 HOH A 62 562 170 HOH HOH . N 8 HOH A 63 563 167 HOH HOH . N 8 HOH A 64 564 41 HOH HOH . N 8 HOH A 65 565 201 HOH HOH . N 8 HOH A 66 566 233 HOH HOH . N 8 HOH A 67 567 37 HOH HOH . N 8 HOH A 68 568 22 HOH HOH . N 8 HOH A 69 569 6 HOH HOH . N 8 HOH A 70 570 47 HOH HOH . N 8 HOH A 71 571 53 HOH HOH . N 8 HOH A 72 572 18 HOH HOH . N 8 HOH A 73 573 29 HOH HOH . N 8 HOH A 74 574 31 HOH HOH . N 8 HOH A 75 575 80 HOH HOH . N 8 HOH A 76 576 75 HOH HOH . N 8 HOH A 77 577 21 HOH HOH . N 8 HOH A 78 578 205 HOH HOH . N 8 HOH A 79 579 30 HOH HOH . N 8 HOH A 80 580 136 HOH HOH . N 8 HOH A 81 581 169 HOH HOH . N 8 HOH A 82 582 144 HOH HOH . N 8 HOH A 83 583 100 HOH HOH . N 8 HOH A 84 584 159 HOH HOH . N 8 HOH A 85 585 74 HOH HOH . N 8 HOH A 86 586 7 HOH HOH . N 8 HOH A 87 587 60 HOH HOH . N 8 HOH A 88 588 52 HOH HOH . N 8 HOH A 89 589 14 HOH HOH . N 8 HOH A 90 590 24 HOH HOH . N 8 HOH A 91 591 183 HOH HOH . N 8 HOH A 92 592 78 HOH HOH . N 8 HOH A 93 593 71 HOH HOH . N 8 HOH A 94 594 99 HOH HOH . N 8 HOH A 95 595 101 HOH HOH . N 8 HOH A 96 596 216 HOH HOH . N 8 HOH A 97 597 163 HOH HOH . N 8 HOH A 98 598 12 HOH HOH . N 8 HOH A 99 599 160 HOH HOH . N 8 HOH A 100 600 228 HOH HOH . N 8 HOH A 101 601 35 HOH HOH . N 8 HOH A 102 602 4 HOH HOH . N 8 HOH A 103 603 127 HOH HOH . N 8 HOH A 104 604 185 HOH HOH . N 8 HOH A 105 605 11 HOH HOH . N 8 HOH A 106 606 59 HOH HOH . N 8 HOH A 107 607 34 HOH HOH . N 8 HOH A 108 608 46 HOH HOH . N 8 HOH A 109 609 174 HOH HOH . N 8 HOH A 110 610 199 HOH HOH . N 8 HOH A 111 611 239 HOH HOH . N 8 HOH A 112 612 96 HOH HOH . N 8 HOH A 113 613 230 HOH HOH . N 8 HOH A 114 614 139 HOH HOH . N 8 HOH A 115 615 186 HOH HOH . N 8 HOH A 116 616 184 HOH HOH . N 8 HOH A 117 617 188 HOH HOH . N 8 HOH A 118 618 23 HOH HOH . N 8 HOH A 119 619 32 HOH HOH . N 8 HOH A 120 620 247 HOH HOH . N 8 HOH A 121 621 220 HOH HOH . N 8 HOH A 122 622 45 HOH HOH . N 8 HOH A 123 623 25 HOH HOH . N 8 HOH A 124 624 249 HOH HOH . N 8 HOH A 125 625 156 HOH HOH . N 8 HOH A 126 626 105 HOH HOH . N 8 HOH A 127 627 148 HOH HOH . N 8 HOH A 128 628 89 HOH HOH . N 8 HOH A 129 629 39 HOH HOH . N 8 HOH A 130 630 90 HOH HOH . N 8 HOH A 131 631 9 HOH HOH . N 8 HOH A 132 632 190 HOH HOH . N 8 HOH A 133 633 222 HOH HOH . N 8 HOH A 134 634 38 HOH HOH . N 8 HOH A 135 635 17 HOH HOH . N 8 HOH A 136 636 135 HOH HOH . N 8 HOH A 137 637 61 HOH HOH . N 8 HOH A 138 638 217 HOH HOH . N 8 HOH A 139 639 49 HOH HOH . N 8 HOH A 140 640 238 HOH HOH . N 8 HOH A 141 641 76 HOH HOH . N 8 HOH A 142 642 182 HOH HOH . N 8 HOH A 143 643 221 HOH HOH . N 8 HOH A 144 644 143 HOH HOH . N 8 HOH A 145 645 133 HOH HOH . N 8 HOH A 146 646 72 HOH HOH . N 8 HOH A 147 647 130 HOH HOH . N 8 HOH A 148 648 120 HOH HOH . N 8 HOH A 149 649 234 HOH HOH . N 8 HOH A 150 650 5 HOH HOH . N 8 HOH A 151 651 204 HOH HOH . N 8 HOH A 152 652 227 HOH HOH . N 8 HOH A 153 653 83 HOH HOH . N 8 HOH A 154 654 243 HOH HOH . N 8 HOH A 155 655 44 HOH HOH . N 8 HOH A 156 656 200 HOH HOH . N 8 HOH A 157 657 84 HOH HOH . N 8 HOH A 158 658 123 HOH HOH . N 8 HOH A 159 659 93 HOH HOH . N 8 HOH A 160 660 235 HOH HOH . N 8 HOH A 161 661 86 HOH HOH . N 8 HOH A 162 662 124 HOH HOH . N 8 HOH A 163 663 65 HOH HOH . N 8 HOH A 164 664 109 HOH HOH . N 8 HOH A 165 665 64 HOH HOH . N 8 HOH A 166 666 179 HOH HOH . N 8 HOH A 167 667 132 HOH HOH . N 8 HOH A 168 668 92 HOH HOH . N 8 HOH A 169 669 226 HOH HOH . N 8 HOH A 170 670 147 HOH HOH . N 8 HOH A 171 671 94 HOH HOH . N 8 HOH A 172 672 77 HOH HOH . N 8 HOH A 173 673 137 HOH HOH . N 8 HOH A 174 674 104 HOH HOH . N 8 HOH A 175 675 62 HOH HOH . N 8 HOH A 176 676 191 HOH HOH . N 8 HOH A 177 677 63 HOH HOH . N 8 HOH A 178 678 87 HOH HOH . N 8 HOH A 179 679 20 HOH HOH . N 8 HOH A 180 680 149 HOH HOH . N 8 HOH A 181 681 153 HOH HOH . N 8 HOH A 182 682 36 HOH HOH . N 8 HOH A 183 683 122 HOH HOH . N 8 HOH A 184 684 108 HOH HOH . N 8 HOH A 185 685 187 HOH HOH . N 8 HOH A 186 686 117 HOH HOH . N 8 HOH A 187 687 43 HOH HOH . N 8 HOH A 188 688 119 HOH HOH . N 8 HOH A 189 689 194 HOH HOH . N 8 HOH A 190 690 189 HOH HOH . N 8 HOH A 191 691 66 HOH HOH . N 8 HOH A 192 692 54 HOH HOH . N 8 HOH A 193 693 97 HOH HOH . N 8 HOH A 194 694 155 HOH HOH . N 8 HOH A 195 695 88 HOH HOH . N 8 HOH A 196 696 112 HOH HOH . N 8 HOH A 197 697 95 HOH HOH . N 8 HOH A 198 698 48 HOH HOH . N 8 HOH A 199 699 252 HOH HOH . N 8 HOH A 200 700 152 HOH HOH . N 8 HOH A 201 701 162 HOH HOH . N 8 HOH A 202 702 248 HOH HOH . N 8 HOH A 203 703 110 HOH HOH . N 8 HOH A 204 704 51 HOH HOH . N 8 HOH A 205 705 128 HOH HOH . N 8 HOH A 206 706 166 HOH HOH . N 8 HOH A 207 707 232 HOH HOH . N 8 HOH A 208 708 55 HOH HOH . N 8 HOH A 209 709 131 HOH HOH . N 8 HOH A 210 710 85 HOH HOH . N 8 HOH A 211 711 210 HOH HOH . N 8 HOH A 212 712 145 HOH HOH . N 8 HOH A 213 713 218 HOH HOH . N 8 HOH A 214 714 213 HOH HOH . N 8 HOH A 215 715 242 HOH HOH . N 8 HOH A 216 716 250 HOH HOH . N 8 HOH A 217 717 181 HOH HOH . N 8 HOH A 218 718 223 HOH HOH . N 8 HOH A 219 719 209 HOH HOH . N 8 HOH A 220 720 114 HOH HOH . N 8 HOH A 221 721 198 HOH HOH . N 8 HOH A 222 722 70 HOH HOH . N 8 HOH A 223 723 193 HOH HOH . N 8 HOH A 224 724 118 HOH HOH . N 8 HOH A 225 725 192 HOH HOH . N 8 HOH A 226 726 113 HOH HOH . N 8 HOH A 227 727 146 HOH HOH . N 8 HOH A 228 728 180 HOH HOH . N 8 HOH A 229 729 134 HOH HOH . N 8 HOH A 230 730 175 HOH HOH . N 8 HOH A 231 731 140 HOH HOH . N 8 HOH A 232 732 196 HOH HOH . N 8 HOH A 233 733 154 HOH HOH . N 8 HOH A 234 734 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . L 6 19.536 4.349 52.118 1 49.76 ? O1 PG4 411 A 1 HETATM 2 C C1 PG4 . . . L 6 20.667 3.533 52.348 1 42.06 ? C1 PG4 411 A 1 HETATM 3 C C2 PG4 . . . L 6 20.907 2.562 51.238 1 42.12 ? C2 PG4 411 A 1 HETATM 4 O O2 PG4 . . . L 6 19.695 1.895 50.914 1 43.58 ? O2 PG4 411 A 1 HETATM 5 C C3 PG4 . . . L 6 19.738 1.263 49.644 1 34.17 ? C3 PG4 411 A 1 HETATM 6 C C4 PG4 . . . L 6 18.505 0.448 49.471 1 37.05 ? C4 PG4 411 A 1 HETATM 7 O O3 PG4 . . . L 6 17.454 1.306 49.035 1 39.89 ? O3 PG4 411 A 1 HETATM 8 C C5 PG4 . . . L 6 16.245 0.61 48.746 1 37.76 ? C5 PG4 411 A 1 HETATM 9 C C6 PG4 . . . L 6 15.181 1.595 48.355 1 39.74 ? C6 PG4 411 A 1 HETATM 10 O O4 PG4 . . . L 6 15.008 2.567 49.381 1 41.09 ? O4 PG4 411 A 1 HETATM 11 C C7 PG4 . . . L 6 13.972 3.504 49.102 1 44.16 ? C7 PG4 411 A 1 HETATM 12 C C8 PG4 . . . L 6 13.838 4.428 50.252 1 49.24 ? C8 PG4 411 A 1 HETATM 13 O O5 PG4 . . . L 6 15.083 5.016 50.597 1 49.75 ? O5 PG4 411 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #