data_5RBR # _model_server_result.job_id Wqm82SV4Cy6bKb1EG3k7kQ _model_server_result.datetime_utc '2024-11-24 07:53:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5RBR # _exptl.entry_id 5RBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.25 _cell.angle_gamma 90 _cell.entry_id 5RBR _cell.length_a 45.285 _cell.length_b 72.924 _cell.length_c 52.486 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc1 J O1 PG4 . A PG4 409 1_555 K NA NA . A NA 410 1_555 ? B ? ? B ? ? ? ? ? ? ? 3.088 ? metalc ? metalc2 J O4 PG4 . A PG4 409 1_555 K NA NA . A NA 410 1_555 ? A ? ? A ? ? ? ? ? ? ? 3.04 ? metalc ? metalc3 J O4 PG4 . A PG4 409 1_555 K NA NA . A NA 410 1_555 ? B ? ? B ? ? ? ? ? ? ? 3.181 ? metalc ? metalc4 J O5 PG4 . A PG4 409 1_555 K NA NA . A NA 410 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.856 ? metalc ? metalc5 J O5 PG4 . A PG4 409 1_555 K NA NA . A NA 410 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.563 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 89 n n S C1 DMS sing 90 n n S C2 DMS sing 91 n n C1 H11 DMS sing 92 n n C1 H12 DMS sing 93 n n C1 H13 DMS sing 94 n n C2 H21 DMS sing 95 n n C2 H22 DMS sing 96 n n C2 H23 DMS sing 97 n n # _atom_sites.entry_id 5RBR _atom_sites.fract_transf_matrix[1][1] 0.022082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007711 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013713 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R8S A 1 401 401 R8S XXX . C 3 DMS A 1 402 501 DMS DMS . D 4 GOL A 1 403 601 GOL GOL . E 5 ACT A 1 404 701 ACT ACT . F 4 GOL A 1 405 801 GOL GOL . G 4 GOL A 1 406 401 GOL GOL . H 4 GOL A 1 407 402 GOL GOL . I 5 ACT A 1 408 405 ACT ACT . J 6 PG4 A 1 409 407 PG4 PG4 . K 7 NA A 1 410 408 NA NA . L 8 HOH A 1 501 113 HOH HOH . L 8 HOH A 2 502 289 HOH HOH . L 8 HOH A 3 503 268 HOH HOH . L 8 HOH A 4 504 82 HOH HOH . L 8 HOH A 5 505 176 HOH HOH . L 8 HOH A 6 506 265 HOH HOH . L 8 HOH A 7 507 227 HOH HOH . L 8 HOH A 8 508 197 HOH HOH . L 8 HOH A 9 509 124 HOH HOH . L 8 HOH A 10 510 272 HOH HOH . L 8 HOH A 11 511 181 HOH HOH . L 8 HOH A 12 512 122 HOH HOH . L 8 HOH A 13 513 279 HOH HOH . L 8 HOH A 14 514 70 HOH HOH . L 8 HOH A 15 515 101 HOH HOH . L 8 HOH A 16 516 153 HOH HOH . L 8 HOH A 17 517 152 HOH HOH . L 8 HOH A 18 518 285 HOH HOH . L 8 HOH A 19 519 187 HOH HOH . L 8 HOH A 20 520 247 HOH HOH . L 8 HOH A 21 521 58 HOH HOH . L 8 HOH A 22 522 100 HOH HOH . L 8 HOH A 23 523 291 HOH HOH . L 8 HOH A 24 524 252 HOH HOH . L 8 HOH A 25 525 151 HOH HOH . L 8 HOH A 26 526 162 HOH HOH . L 8 HOH A 27 527 42 HOH HOH . L 8 HOH A 28 528 135 HOH HOH . L 8 HOH A 29 529 245 HOH HOH . L 8 HOH A 30 530 284 HOH HOH . L 8 HOH A 31 531 98 HOH HOH . L 8 HOH A 32 532 240 HOH HOH . L 8 HOH A 33 533 112 HOH HOH . L 8 HOH A 34 534 168 HOH HOH . L 8 HOH A 35 535 8 HOH HOH . L 8 HOH A 36 536 207 HOH HOH . L 8 HOH A 37 537 15 HOH HOH . L 8 HOH A 38 538 175 HOH HOH . L 8 HOH A 39 539 81 HOH HOH . L 8 HOH A 40 540 210 HOH HOH . L 8 HOH A 41 541 281 HOH HOH . L 8 HOH A 42 542 246 HOH HOH . L 8 HOH A 43 543 20 HOH HOH . L 8 HOH A 44 544 269 HOH HOH . L 8 HOH A 45 545 3 HOH HOH . L 8 HOH A 46 546 83 HOH HOH . L 8 HOH A 47 547 65 HOH HOH . L 8 HOH A 48 548 186 HOH HOH . L 8 HOH A 49 549 46 HOH HOH . L 8 HOH A 50 550 17 HOH HOH . L 8 HOH A 51 551 126 HOH HOH . L 8 HOH A 52 552 242 HOH HOH . L 8 HOH A 53 553 192 HOH HOH . L 8 HOH A 54 554 226 HOH HOH . L 8 HOH A 55 555 199 HOH HOH . L 8 HOH A 56 556 85 HOH HOH . L 8 HOH A 57 557 23 HOH HOH . L 8 HOH A 58 558 18 HOH HOH . L 8 HOH A 59 559 7 HOH HOH . L 8 HOH A 60 560 56 HOH HOH . L 8 HOH A 61 561 145 HOH HOH . L 8 HOH A 62 562 2 HOH HOH . L 8 HOH A 63 563 158 HOH HOH . L 8 HOH A 64 564 280 HOH HOH . L 8 HOH A 65 565 262 HOH HOH . L 8 HOH A 66 566 233 HOH HOH . L 8 HOH A 67 567 146 HOH HOH . L 8 HOH A 68 568 38 HOH HOH . L 8 HOH A 69 569 216 HOH HOH . L 8 HOH A 70 570 43 HOH HOH . L 8 HOH A 71 571 41 HOH HOH . L 8 HOH A 72 572 244 HOH HOH . L 8 HOH A 73 573 66 HOH HOH . L 8 HOH A 74 574 16 HOH HOH . L 8 HOH A 75 575 71 HOH HOH . L 8 HOH A 76 576 12 HOH HOH . L 8 HOH A 77 577 49 HOH HOH . L 8 HOH A 78 578 213 HOH HOH . L 8 HOH A 79 579 6 HOH HOH . L 8 HOH A 80 580 25 HOH HOH . L 8 HOH A 81 581 140 HOH HOH . L 8 HOH A 82 582 193 HOH HOH . L 8 HOH A 83 583 63 HOH HOH . L 8 HOH A 84 584 189 HOH HOH . L 8 HOH A 85 585 182 HOH HOH . L 8 HOH A 86 586 275 HOH HOH . L 8 HOH A 87 587 39 HOH HOH . L 8 HOH A 88 588 156 HOH HOH . L 8 HOH A 89 589 27 HOH HOH . L 8 HOH A 90 590 178 HOH HOH . L 8 HOH A 91 591 159 HOH HOH . L 8 HOH A 92 592 45 HOH HOH . L 8 HOH A 93 593 87 HOH HOH . L 8 HOH A 94 594 179 HOH HOH . L 8 HOH A 95 595 86 HOH HOH . L 8 HOH A 96 596 139 HOH HOH . L 8 HOH A 97 597 191 HOH HOH . L 8 HOH A 98 598 208 HOH HOH . L 8 HOH A 99 599 5 HOH HOH . L 8 HOH A 100 600 30 HOH HOH . L 8 HOH A 101 601 19 HOH HOH . L 8 HOH A 102 602 110 HOH HOH . L 8 HOH A 103 603 270 HOH HOH . L 8 HOH A 104 604 96 HOH HOH . L 8 HOH A 105 605 164 HOH HOH . L 8 HOH A 106 606 24 HOH HOH . L 8 HOH A 107 607 52 HOH HOH . L 8 HOH A 108 608 119 HOH HOH . L 8 HOH A 109 609 184 HOH HOH . L 8 HOH A 110 610 14 HOH HOH . L 8 HOH A 111 611 157 HOH HOH . L 8 HOH A 112 612 79 HOH HOH . L 8 HOH A 113 613 107 HOH HOH . L 8 HOH A 114 614 128 HOH HOH . L 8 HOH A 115 615 36 HOH HOH . L 8 HOH A 116 616 97 HOH HOH . L 8 HOH A 117 617 22 HOH HOH . L 8 HOH A 118 618 72 HOH HOH . L 8 HOH A 119 619 134 HOH HOH . L 8 HOH A 120 620 174 HOH HOH . L 8 HOH A 121 621 177 HOH HOH . L 8 HOH A 122 622 261 HOH HOH . L 8 HOH A 123 623 21 HOH HOH . L 8 HOH A 124 624 62 HOH HOH . L 8 HOH A 125 625 133 HOH HOH . L 8 HOH A 126 626 29 HOH HOH . L 8 HOH A 127 627 141 HOH HOH . L 8 HOH A 128 628 287 HOH HOH . L 8 HOH A 129 629 99 HOH HOH . L 8 HOH A 130 630 206 HOH HOH . L 8 HOH A 131 631 47 HOH HOH . L 8 HOH A 132 632 73 HOH HOH . L 8 HOH A 133 633 224 HOH HOH . L 8 HOH A 134 634 167 HOH HOH . L 8 HOH A 135 635 183 HOH HOH . L 8 HOH A 136 636 211 HOH HOH . L 8 HOH A 137 637 215 HOH HOH . L 8 HOH A 138 638 221 HOH HOH . L 8 HOH A 139 639 198 HOH HOH . L 8 HOH A 140 640 102 HOH HOH . L 8 HOH A 141 641 104 HOH HOH . L 8 HOH A 142 642 26 HOH HOH . L 8 HOH A 143 643 93 HOH HOH . L 8 HOH A 144 644 129 HOH HOH . L 8 HOH A 145 645 237 HOH HOH . L 8 HOH A 146 646 9 HOH HOH . L 8 HOH A 147 647 132 HOH HOH . L 8 HOH A 148 648 138 HOH HOH . L 8 HOH A 149 649 10 HOH HOH . L 8 HOH A 150 650 118 HOH HOH . L 8 HOH A 151 651 260 HOH HOH . L 8 HOH A 152 652 33 HOH HOH . L 8 HOH A 153 653 103 HOH HOH . L 8 HOH A 154 654 277 HOH HOH . L 8 HOH A 155 655 222 HOH HOH . L 8 HOH A 156 656 34 HOH HOH . L 8 HOH A 157 657 105 HOH HOH . L 8 HOH A 158 658 80 HOH HOH . L 8 HOH A 159 659 64 HOH HOH . L 8 HOH A 160 660 278 HOH HOH . L 8 HOH A 161 661 150 HOH HOH . L 8 HOH A 162 662 78 HOH HOH . L 8 HOH A 163 663 163 HOH HOH . L 8 HOH A 164 664 201 HOH HOH . L 8 HOH A 165 665 273 HOH HOH . L 8 HOH A 166 666 40 HOH HOH . L 8 HOH A 167 667 90 HOH HOH . L 8 HOH A 168 668 195 HOH HOH . L 8 HOH A 169 669 238 HOH HOH . L 8 HOH A 170 670 4 HOH HOH . L 8 HOH A 171 671 88 HOH HOH . L 8 HOH A 172 672 258 HOH HOH . L 8 HOH A 173 673 127 HOH HOH . L 8 HOH A 174 674 67 HOH HOH . L 8 HOH A 175 675 61 HOH HOH . L 8 HOH A 176 676 91 HOH HOH . L 8 HOH A 177 677 232 HOH HOH . L 8 HOH A 178 678 50 HOH HOH . L 8 HOH A 179 679 28 HOH HOH . L 8 HOH A 180 680 44 HOH HOH . L 8 HOH A 181 681 209 HOH HOH . L 8 HOH A 182 682 185 HOH HOH . L 8 HOH A 183 683 53 HOH HOH . L 8 HOH A 184 684 130 HOH HOH . L 8 HOH A 185 685 37 HOH HOH . L 8 HOH A 186 686 77 HOH HOH . L 8 HOH A 187 687 267 HOH HOH . L 8 HOH A 188 688 68 HOH HOH . L 8 HOH A 189 689 35 HOH HOH . L 8 HOH A 190 690 60 HOH HOH . L 8 HOH A 191 691 165 HOH HOH . L 8 HOH A 192 692 136 HOH HOH . L 8 HOH A 193 693 115 HOH HOH . L 8 HOH A 194 694 76 HOH HOH . L 8 HOH A 195 695 170 HOH HOH . L 8 HOH A 196 696 48 HOH HOH . L 8 HOH A 197 697 212 HOH HOH . L 8 HOH A 198 698 234 HOH HOH . L 8 HOH A 199 699 31 HOH HOH . L 8 HOH A 200 700 55 HOH HOH . L 8 HOH A 201 701 125 HOH HOH . L 8 HOH A 202 702 51 HOH HOH . L 8 HOH A 203 703 180 HOH HOH . L 8 HOH A 204 704 251 HOH HOH . L 8 HOH A 205 705 69 HOH HOH . L 8 HOH A 206 706 266 HOH HOH . L 8 HOH A 207 707 218 HOH HOH . L 8 HOH A 208 708 94 HOH HOH . L 8 HOH A 209 709 116 HOH HOH . L 8 HOH A 210 710 92 HOH HOH . L 8 HOH A 211 711 74 HOH HOH . L 8 HOH A 212 712 89 HOH HOH . L 8 HOH A 213 713 274 HOH HOH . L 8 HOH A 214 714 241 HOH HOH . L 8 HOH A 215 715 239 HOH HOH . L 8 HOH A 216 716 290 HOH HOH . L 8 HOH A 217 717 231 HOH HOH . L 8 HOH A 218 718 142 HOH HOH . L 8 HOH A 219 719 166 HOH HOH . L 8 HOH A 220 720 54 HOH HOH . L 8 HOH A 221 721 243 HOH HOH . L 8 HOH A 222 722 219 HOH HOH . L 8 HOH A 223 723 84 HOH HOH . L 8 HOH A 224 724 109 HOH HOH . L 8 HOH A 225 725 235 HOH HOH . L 8 HOH A 226 726 143 HOH HOH . L 8 HOH A 227 727 169 HOH HOH . L 8 HOH A 228 728 286 HOH HOH . L 8 HOH A 229 729 257 HOH HOH . L 8 HOH A 230 730 171 HOH HOH . L 8 HOH A 231 731 283 HOH HOH . L 8 HOH A 232 732 144 HOH HOH . L 8 HOH A 233 733 147 HOH HOH . L 8 HOH A 234 734 114 HOH HOH . L 8 HOH A 235 735 188 HOH HOH . L 8 HOH A 236 736 106 HOH HOH . L 8 HOH A 237 737 123 HOH HOH . L 8 HOH A 238 738 57 HOH HOH . L 8 HOH A 239 739 121 HOH HOH . L 8 HOH A 240 740 248 HOH HOH . L 8 HOH A 241 741 249 HOH HOH . L 8 HOH A 242 742 160 HOH HOH . L 8 HOH A 243 743 196 HOH HOH . L 8 HOH A 244 744 155 HOH HOH . L 8 HOH A 245 745 154 HOH HOH . L 8 HOH A 246 746 230 HOH HOH . L 8 HOH A 247 747 256 HOH HOH . L 8 HOH A 248 748 205 HOH HOH . L 8 HOH A 249 749 236 HOH HOH . L 8 HOH A 250 750 120 HOH HOH . L 8 HOH A 251 751 282 HOH HOH . L 8 HOH A 252 752 202 HOH HOH . L 8 HOH A 253 753 117 HOH HOH . L 8 HOH A 254 754 59 HOH HOH . L 8 HOH A 255 755 253 HOH HOH . L 8 HOH A 256 756 228 HOH HOH . L 8 HOH A 257 757 254 HOH HOH . L 8 HOH A 258 758 271 HOH HOH . L 8 HOH A 259 759 217 HOH HOH . L 8 HOH A 260 760 214 HOH HOH . L 8 HOH A 261 761 95 HOH HOH . L 8 HOH A 262 762 173 HOH HOH . L 8 HOH A 263 763 190 HOH HOH . L 8 HOH A 264 764 131 HOH HOH . L 8 HOH A 265 765 220 HOH HOH . L 8 HOH A 266 766 161 HOH HOH . L 8 HOH A 267 767 149 HOH HOH . L 8 HOH A 268 768 223 HOH HOH . L 8 HOH A 269 769 250 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 16.823 4.174 63.789 1 29.8 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 3 17.796 3.153 64.381 1 18.56 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 3 17.681 5.046 62.515 1 32.22 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 3 16.744 5.493 64.967 1 32.03 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #