data_5RBV
#
_model_server_result.job_id            eYlHfrkE4iO7cMi5PivRlA 
_model_server_result.datetime_utc      '2025-07-07 06:19:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5rbv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    5RBV 
#
_exptl.entry_id    5RBV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.17 
_cell.angle_gamma         90 
_cell.entry_id            5RBV 
_cell.length_a            45.231 
_cell.length_b            72.966 
_cell.length_c            52.337 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RBV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             344 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              255 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             379 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              290 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.064 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 89 n n 
S C1 DMS sing 90 n n 
S C2 DMS sing 91 n n 
C1 H11 DMS sing 92 n n 
C1 H12 DMS sing 93 n n 
C1 H13 DMS sing 94 n n 
C2 H21 DMS sing 95 n n 
C2 H22 DMS sing 96 n n 
C2 H23 DMS sing 97 n n 
#
_atom_sites.entry_id                     5RBV 
_atom_sites.fract_transf_matrix[1][1]    0.022109 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007686 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013705 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020229 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RQD A 1 401 401 RQD XXX . 
C 3 DMS A 1 402 501 DMS DMS . 
D 3 DMS A 1 403 601 DMS DMS . 
E 3 DMS A 1 404 701 DMS DMS . 
F 3 DMS A 1 405 801 DMS DMS . 
G 4 GOL A 1 406 901 GOL GOL . 
H 4 GOL A 1 407 401 GOL GOL . 
I 4 GOL A 1 408 402 GOL GOL . 
J 5 ACT A 1 409 405 ACT ACT . 
K 6 PG4 A 1 410 407 PG4 PG4 . 
L 7 HOH A 1 501 111 HOH HOH . 
L 7 HOH A 2 502 77 HOH HOH . 
L 7 HOH A 3 503 127 HOH HOH . 
L 7 HOH A 4 504 239 HOH HOH . 
L 7 HOH A 5 505 256 HOH HOH . 
L 7 HOH A 6 506 173 HOH HOH . 
L 7 HOH A 7 507 126 HOH HOH . 
L 7 HOH A 8 508 270 HOH HOH . 
L 7 HOH A 9 509 272 HOH HOH . 
L 7 HOH A 10 510 248 HOH HOH . 
L 7 HOH A 11 511 38 HOH HOH . 
L 7 HOH A 12 512 145 HOH HOH . 
L 7 HOH A 13 513 154 HOH HOH . 
L 7 HOH A 14 514 196 HOH HOH . 
L 7 HOH A 15 515 26 HOH HOH . 
L 7 HOH A 16 516 71 HOH HOH . 
L 7 HOH A 17 517 167 HOH HOH . 
L 7 HOH A 18 518 232 HOH HOH . 
L 7 HOH A 19 519 9 HOH HOH . 
L 7 HOH A 20 520 36 HOH HOH . 
L 7 HOH A 21 521 276 HOH HOH . 
L 7 HOH A 22 522 176 HOH HOH . 
L 7 HOH A 23 523 99 HOH HOH . 
L 7 HOH A 24 524 120 HOH HOH . 
L 7 HOH A 25 525 86 HOH HOH . 
L 7 HOH A 26 526 157 HOH HOH . 
L 7 HOH A 27 527 190 HOH HOH . 
L 7 HOH A 28 528 265 HOH HOH . 
L 7 HOH A 29 529 262 HOH HOH . 
L 7 HOH A 30 530 203 HOH HOH . 
L 7 HOH A 31 531 183 HOH HOH . 
L 7 HOH A 32 532 138 HOH HOH . 
L 7 HOH A 33 533 141 HOH HOH . 
L 7 HOH A 34 534 16 HOH HOH . 
L 7 HOH A 35 535 67 HOH HOH . 
L 7 HOH A 36 536 237 HOH HOH . 
L 7 HOH A 37 537 43 HOH HOH . 
L 7 HOH A 38 538 18 HOH HOH . 
L 7 HOH A 39 539 217 HOH HOH . 
L 7 HOH A 40 540 279 HOH HOH . 
L 7 HOH A 41 541 149 HOH HOH . 
L 7 HOH A 42 542 25 HOH HOH . 
L 7 HOH A 43 543 79 HOH HOH . 
L 7 HOH A 44 544 267 HOH HOH . 
L 7 HOH A 45 545 54 HOH HOH . 
L 7 HOH A 46 546 135 HOH HOH . 
L 7 HOH A 47 547 35 HOH HOH . 
L 7 HOH A 48 548 3 HOH HOH . 
L 7 HOH A 49 549 164 HOH HOH . 
L 7 HOH A 50 550 13 HOH HOH . 
L 7 HOH A 51 551 97 HOH HOH . 
L 7 HOH A 52 552 110 HOH HOH . 
L 7 HOH A 53 553 64 HOH HOH . 
L 7 HOH A 54 554 10 HOH HOH . 
L 7 HOH A 55 555 170 HOH HOH . 
L 7 HOH A 56 556 30 HOH HOH . 
L 7 HOH A 57 557 152 HOH HOH . 
L 7 HOH A 58 558 31 HOH HOH . 
L 7 HOH A 59 559 8 HOH HOH . 
L 7 HOH A 60 560 271 HOH HOH . 
L 7 HOH A 61 561 235 HOH HOH . 
L 7 HOH A 62 562 15 HOH HOH . 
L 7 HOH A 63 563 73 HOH HOH . 
L 7 HOH A 64 564 62 HOH HOH . 
L 7 HOH A 65 565 230 HOH HOH . 
L 7 HOH A 66 566 50 HOH HOH . 
L 7 HOH A 67 567 52 HOH HOH . 
L 7 HOH A 68 568 45 HOH HOH . 
L 7 HOH A 69 569 130 HOH HOH . 
L 7 HOH A 70 570 29 HOH HOH . 
L 7 HOH A 71 571 51 HOH HOH . 
L 7 HOH A 72 572 142 HOH HOH . 
L 7 HOH A 73 573 40 HOH HOH . 
L 7 HOH A 74 574 61 HOH HOH . 
L 7 HOH A 75 575 206 HOH HOH . 
L 7 HOH A 76 576 169 HOH HOH . 
L 7 HOH A 77 577 5 HOH HOH . 
L 7 HOH A 78 578 195 HOH HOH . 
L 7 HOH A 79 579 133 HOH HOH . 
L 7 HOH A 80 580 7 HOH HOH . 
L 7 HOH A 81 581 39 HOH HOH . 
L 7 HOH A 82 582 102 HOH HOH . 
L 7 HOH A 83 583 189 HOH HOH . 
L 7 HOH A 84 584 22 HOH HOH . 
L 7 HOH A 85 585 12 HOH HOH . 
L 7 HOH A 86 586 46 HOH HOH . 
L 7 HOH A 87 587 163 HOH HOH . 
L 7 HOH A 88 588 209 HOH HOH . 
L 7 HOH A 89 589 48 HOH HOH . 
L 7 HOH A 90 590 24 HOH HOH . 
L 7 HOH A 91 591 150 HOH HOH . 
L 7 HOH A 92 592 34 HOH HOH . 
L 7 HOH A 93 593 191 HOH HOH . 
L 7 HOH A 94 594 91 HOH HOH . 
L 7 HOH A 95 595 109 HOH HOH . 
L 7 HOH A 96 596 193 HOH HOH . 
L 7 HOH A 97 597 125 HOH HOH . 
L 7 HOH A 98 598 116 HOH HOH . 
L 7 HOH A 99 599 177 HOH HOH . 
L 7 HOH A 100 600 47 HOH HOH . 
L 7 HOH A 101 601 94 HOH HOH . 
L 7 HOH A 102 602 96 HOH HOH . 
L 7 HOH A 103 603 98 HOH HOH . 
L 7 HOH A 104 604 19 HOH HOH . 
L 7 HOH A 105 605 112 HOH HOH . 
L 7 HOH A 106 606 197 HOH HOH . 
L 7 HOH A 107 607 224 HOH HOH . 
L 7 HOH A 108 608 92 HOH HOH . 
L 7 HOH A 109 609 233 HOH HOH . 
L 7 HOH A 110 610 234 HOH HOH . 
L 7 HOH A 111 611 75 HOH HOH . 
L 7 HOH A 112 612 28 HOH HOH . 
L 7 HOH A 113 613 212 HOH HOH . 
L 7 HOH A 114 614 185 HOH HOH . 
L 7 HOH A 115 615 208 HOH HOH . 
L 7 HOH A 116 616 107 HOH HOH . 
L 7 HOH A 117 617 260 HOH HOH . 
L 7 HOH A 118 618 89 HOH HOH . 
L 7 HOH A 119 619 57 HOH HOH . 
L 7 HOH A 120 620 70 HOH HOH . 
L 7 HOH A 121 621 14 HOH HOH . 
L 7 HOH A 122 622 159 HOH HOH . 
L 7 HOH A 123 623 84 HOH HOH . 
L 7 HOH A 124 624 87 HOH HOH . 
L 7 HOH A 125 625 151 HOH HOH . 
L 7 HOH A 126 626 140 HOH HOH . 
L 7 HOH A 127 627 108 HOH HOH . 
L 7 HOH A 128 628 264 HOH HOH . 
L 7 HOH A 129 629 204 HOH HOH . 
L 7 HOH A 130 630 23 HOH HOH . 
L 7 HOH A 131 631 118 HOH HOH . 
L 7 HOH A 132 632 168 HOH HOH . 
L 7 HOH A 133 633 158 HOH HOH . 
L 7 HOH A 134 634 117 HOH HOH . 
L 7 HOH A 135 635 143 HOH HOH . 
L 7 HOH A 136 636 6 HOH HOH . 
L 7 HOH A 137 637 21 HOH HOH . 
L 7 HOH A 138 638 181 HOH HOH . 
L 7 HOH A 139 639 211 HOH HOH . 
L 7 HOH A 140 640 179 HOH HOH . 
L 7 HOH A 141 641 147 HOH HOH . 
L 7 HOH A 142 642 162 HOH HOH . 
L 7 HOH A 143 643 161 HOH HOH . 
L 7 HOH A 144 644 253 HOH HOH . 
L 7 HOH A 145 645 199 HOH HOH . 
L 7 HOH A 146 646 17 HOH HOH . 
L 7 HOH A 147 647 244 HOH HOH . 
L 7 HOH A 148 648 277 HOH HOH . 
L 7 HOH A 149 649 228 HOH HOH . 
L 7 HOH A 150 650 95 HOH HOH . 
L 7 HOH A 151 651 65 HOH HOH . 
L 7 HOH A 152 652 44 HOH HOH . 
L 7 HOH A 153 653 69 HOH HOH . 
L 7 HOH A 154 654 83 HOH HOH . 
L 7 HOH A 155 655 174 HOH HOH . 
L 7 HOH A 156 656 231 HOH HOH . 
L 7 HOH A 157 657 113 HOH HOH . 
L 7 HOH A 158 658 250 HOH HOH . 
L 7 HOH A 159 659 76 HOH HOH . 
L 7 HOH A 160 660 74 HOH HOH . 
L 7 HOH A 161 661 4 HOH HOH . 
L 7 HOH A 162 662 72 HOH HOH . 
L 7 HOH A 163 663 53 HOH HOH . 
L 7 HOH A 164 664 148 HOH HOH . 
L 7 HOH A 165 665 60 HOH HOH . 
L 7 HOH A 166 666 216 HOH HOH . 
L 7 HOH A 167 667 42 HOH HOH . 
L 7 HOH A 168 668 134 HOH HOH . 
L 7 HOH A 169 669 80 HOH HOH . 
L 7 HOH A 170 670 132 HOH HOH . 
L 7 HOH A 171 671 27 HOH HOH . 
L 7 HOH A 172 672 104 HOH HOH . 
L 7 HOH A 173 673 49 HOH HOH . 
L 7 HOH A 174 674 90 HOH HOH . 
L 7 HOH A 175 675 37 HOH HOH . 
L 7 HOH A 176 676 227 HOH HOH . 
L 7 HOH A 177 677 252 HOH HOH . 
L 7 HOH A 178 678 261 HOH HOH . 
L 7 HOH A 179 679 100 HOH HOH . 
L 7 HOH A 180 680 58 HOH HOH . 
L 7 HOH A 181 681 213 HOH HOH . 
L 7 HOH A 182 682 115 HOH HOH . 
L 7 HOH A 183 683 180 HOH HOH . 
L 7 HOH A 184 684 229 HOH HOH . 
L 7 HOH A 185 685 55 HOH HOH . 
L 7 HOH A 186 686 139 HOH HOH . 
L 7 HOH A 187 687 241 HOH HOH . 
L 7 HOH A 188 688 249 HOH HOH . 
L 7 HOH A 189 689 131 HOH HOH . 
L 7 HOH A 190 690 201 HOH HOH . 
L 7 HOH A 191 691 129 HOH HOH . 
L 7 HOH A 192 692 119 HOH HOH . 
L 7 HOH A 193 693 171 HOH HOH . 
L 7 HOH A 194 694 188 HOH HOH . 
L 7 HOH A 195 695 20 HOH HOH . 
L 7 HOH A 196 696 81 HOH HOH . 
L 7 HOH A 197 697 187 HOH HOH . 
L 7 HOH A 198 698 33 HOH HOH . 
L 7 HOH A 199 699 266 HOH HOH . 
L 7 HOH A 200 700 85 HOH HOH . 
L 7 HOH A 201 701 93 HOH HOH . 
L 7 HOH A 202 702 160 HOH HOH . 
L 7 HOH A 203 703 56 HOH HOH . 
L 7 HOH A 204 704 236 HOH HOH . 
L 7 HOH A 205 705 128 HOH HOH . 
L 7 HOH A 206 706 251 HOH HOH . 
L 7 HOH A 207 707 165 HOH HOH . 
L 7 HOH A 208 708 220 HOH HOH . 
L 7 HOH A 209 709 144 HOH HOH . 
L 7 HOH A 210 710 215 HOH HOH . 
L 7 HOH A 211 711 238 HOH HOH . 
L 7 HOH A 212 712 153 HOH HOH . 
L 7 HOH A 213 713 122 HOH HOH . 
L 7 HOH A 214 714 101 HOH HOH . 
L 7 HOH A 215 715 275 HOH HOH . 
L 7 HOH A 216 716 123 HOH HOH . 
L 7 HOH A 217 717 59 HOH HOH . 
L 7 HOH A 218 718 273 HOH HOH . 
L 7 HOH A 219 719 124 HOH HOH . 
L 7 HOH A 220 720 63 HOH HOH . 
L 7 HOH A 221 721 218 HOH HOH . 
L 7 HOH A 222 722 259 HOH HOH . 
L 7 HOH A 223 723 243 HOH HOH . 
L 7 HOH A 224 724 194 HOH HOH . 
L 7 HOH A 225 725 198 HOH HOH . 
L 7 HOH A 226 726 246 HOH HOH . 
L 7 HOH A 227 727 225 HOH HOH . 
L 7 HOH A 228 728 136 HOH HOH . 
L 7 HOH A 229 729 269 HOH HOH . 
L 7 HOH A 230 730 88 HOH HOH . 
L 7 HOH A 231 731 105 HOH HOH . 
L 7 HOH A 232 732 200 HOH HOH . 
L 7 HOH A 233 733 66 HOH HOH . 
L 7 HOH A 234 734 254 HOH HOH . 
L 7 HOH A 235 735 240 HOH HOH . 
L 7 HOH A 236 736 202 HOH HOH . 
L 7 HOH A 237 737 182 HOH HOH . 
L 7 HOH A 238 738 214 HOH HOH . 
L 7 HOH A 239 739 278 HOH HOH . 
L 7 HOH A 240 740 106 HOH HOH . 
L 7 HOH A 241 741 166 HOH HOH . 
L 7 HOH A 242 742 146 HOH HOH . 
L 7 HOH A 243 743 210 HOH HOH . 
L 7 HOH A 244 744 263 HOH HOH . 
L 7 HOH A 245 745 172 HOH HOH . 
L 7 HOH A 246 746 121 HOH HOH . 
L 7 HOH A 247 747 156 HOH HOH . 
L 7 HOH A 248 748 207 HOH HOH . 
L 7 HOH A 249 749 186 HOH HOH . 
L 7 HOH A 250 750 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . C 3 23.58 2.722 55.306 1 21.88 ? S DMS 402 A 1 
HETATM 2 O O DMS . . . C 3 24.616 3.567 54.538 1 14.2 ? O DMS 402 A 1 
HETATM 3 C C1 DMS . . . C 3 23.165 3.586 56.756 1 26.98 ? C1 DMS 402 A 1 
HETATM 4 C C2 DMS . . . C 3 24.456 1.362 55.94 1 18.12 ? C2 DMS 402 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#