data_5RBW # _model_server_result.job_id BikESQgVMwpAn90CHGk9sg _model_server_result.datetime_utc '2025-01-10 08:32:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5RBW # _exptl.entry_id 5RBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.16 _cell.angle_gamma 90 _cell.entry_id 5RBW _cell.length_a 45.228 _cell.length_b 72.885 _cell.length_c 52.57 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.126 ? disulf ? disulf2 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.11 ? disulf ? disulf3 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.967 ? disulf ? disulf4 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? ? ? ? D ? ? ? ? ? ? ? 1.959 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5RBW _atom_sites.fract_transf_matrix[1][1] 0.02211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007682 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R9G A 1 401 401 R9G XXX . C 3 DMS A 1 402 501 DMS DMS . D 3 DMS A 1 403 601 DMS DMS . E 4 GOL A 1 404 401 GOL GOL . F 4 GOL A 1 405 402 GOL GOL . G 5 PG4 A 1 406 407 PG4 PG4 . H 6 HOH A 1 501 127 HOH HOH . H 6 HOH A 2 502 265 HOH HOH . H 6 HOH A 3 503 267 HOH HOH . H 6 HOH A 4 504 234 HOH HOH . H 6 HOH A 5 505 228 HOH HOH . H 6 HOH A 6 506 251 HOH HOH . H 6 HOH A 7 507 177 HOH HOH . H 6 HOH A 8 508 202 HOH HOH . H 6 HOH A 9 509 118 HOH HOH . H 6 HOH A 10 510 257 HOH HOH . H 6 HOH A 11 511 38 HOH HOH . H 6 HOH A 12 512 201 HOH HOH . H 6 HOH A 13 513 179 HOH HOH . H 6 HOH A 14 514 181 HOH HOH . H 6 HOH A 15 515 269 HOH HOH . H 6 HOH A 16 516 134 HOH HOH . H 6 HOH A 17 517 271 HOH HOH . H 6 HOH A 18 518 256 HOH HOH . H 6 HOH A 19 519 56 HOH HOH . H 6 HOH A 20 520 117 HOH HOH . H 6 HOH A 21 521 46 HOH HOH . H 6 HOH A 22 522 133 HOH HOH . H 6 HOH A 23 523 182 HOH HOH . H 6 HOH A 24 524 192 HOH HOH . H 6 HOH A 25 525 100 HOH HOH . H 6 HOH A 26 526 123 HOH HOH . H 6 HOH A 27 527 165 HOH HOH . H 6 HOH A 28 528 114 HOH HOH . H 6 HOH A 29 529 184 HOH HOH . H 6 HOH A 30 530 253 HOH HOH . H 6 HOH A 31 531 195 HOH HOH . H 6 HOH A 32 532 208 HOH HOH . H 6 HOH A 33 533 250 HOH HOH . H 6 HOH A 34 534 244 HOH HOH . H 6 HOH A 35 535 224 HOH HOH . H 6 HOH A 36 536 92 HOH HOH . H 6 HOH A 37 537 52 HOH HOH . H 6 HOH A 38 538 18 HOH HOH . H 6 HOH A 39 539 213 HOH HOH . H 6 HOH A 40 540 14 HOH HOH . H 6 HOH A 41 541 22 HOH HOH . H 6 HOH A 42 542 72 HOH HOH . H 6 HOH A 43 543 45 HOH HOH . H 6 HOH A 44 544 203 HOH HOH . H 6 HOH A 45 545 3 HOH HOH . H 6 HOH A 46 546 39 HOH HOH . H 6 HOH A 47 547 20 HOH HOH . H 6 HOH A 48 548 87 HOH HOH . H 6 HOH A 49 549 64 HOH HOH . H 6 HOH A 50 550 41 HOH HOH . H 6 HOH A 51 551 16 HOH HOH . H 6 HOH A 52 552 150 HOH HOH . H 6 HOH A 53 553 11 HOH HOH . H 6 HOH A 54 554 66 HOH HOH . H 6 HOH A 55 555 200 HOH HOH . H 6 HOH A 56 556 2 HOH HOH . H 6 HOH A 57 557 210 HOH HOH . H 6 HOH A 58 558 237 HOH HOH . H 6 HOH A 59 559 135 HOH HOH . H 6 HOH A 60 560 30 HOH HOH . H 6 HOH A 61 561 170 HOH HOH . H 6 HOH A 62 562 86 HOH HOH . H 6 HOH A 63 563 138 HOH HOH . H 6 HOH A 64 564 35 HOH HOH . H 6 HOH A 65 565 246 HOH HOH . H 6 HOH A 66 566 190 HOH HOH . H 6 HOH A 67 567 194 HOH HOH . H 6 HOH A 68 568 106 HOH HOH . H 6 HOH A 69 569 25 HOH HOH . H 6 HOH A 70 570 149 HOH HOH . H 6 HOH A 71 571 163 HOH HOH . H 6 HOH A 72 572 162 HOH HOH . H 6 HOH A 73 573 151 HOH HOH . H 6 HOH A 74 574 80 HOH HOH . H 6 HOH A 75 575 175 HOH HOH . H 6 HOH A 76 576 48 HOH HOH . H 6 HOH A 77 577 178 HOH HOH . H 6 HOH A 78 578 225 HOH HOH . H 6 HOH A 79 579 247 HOH HOH . H 6 HOH A 80 580 5 HOH HOH . H 6 HOH A 81 581 205 HOH HOH . H 6 HOH A 82 582 50 HOH HOH . H 6 HOH A 83 583 277 HOH HOH . H 6 HOH A 84 584 93 HOH HOH . H 6 HOH A 85 585 89 HOH HOH . H 6 HOH A 86 586 23 HOH HOH . H 6 HOH A 87 587 17 HOH HOH . H 6 HOH A 88 588 278 HOH HOH . H 6 HOH A 89 589 62 HOH HOH . H 6 HOH A 90 590 183 HOH HOH . H 6 HOH A 91 591 104 HOH HOH . H 6 HOH A 92 592 110 HOH HOH . H 6 HOH A 93 593 91 HOH HOH . H 6 HOH A 94 594 8 HOH HOH . H 6 HOH A 95 595 21 HOH HOH . H 6 HOH A 96 596 26 HOH HOH . H 6 HOH A 97 597 24 HOH HOH . H 6 HOH A 98 598 12 HOH HOH . H 6 HOH A 99 599 43 HOH HOH . H 6 HOH A 100 600 173 HOH HOH . H 6 HOH A 101 601 59 HOH HOH . H 6 HOH A 102 602 168 HOH HOH . H 6 HOH A 103 603 13 HOH HOH . H 6 HOH A 104 604 19 HOH HOH . H 6 HOH A 105 605 153 HOH HOH . H 6 HOH A 106 606 84 HOH HOH . H 6 HOH A 107 607 147 HOH HOH . H 6 HOH A 108 608 69 HOH HOH . H 6 HOH A 109 609 81 HOH HOH . H 6 HOH A 110 610 55 HOH HOH . H 6 HOH A 111 611 49 HOH HOH . H 6 HOH A 112 612 137 HOH HOH . H 6 HOH A 113 613 275 HOH HOH . H 6 HOH A 114 614 79 HOH HOH . H 6 HOH A 115 615 140 HOH HOH . H 6 HOH A 116 616 27 HOH HOH . H 6 HOH A 117 617 65 HOH HOH . H 6 HOH A 118 618 60 HOH HOH . H 6 HOH A 119 619 160 HOH HOH . H 6 HOH A 120 620 157 HOH HOH . H 6 HOH A 121 621 98 HOH HOH . H 6 HOH A 122 622 126 HOH HOH . H 6 HOH A 123 623 28 HOH HOH . H 6 HOH A 124 624 111 HOH HOH . H 6 HOH A 125 625 95 HOH HOH . H 6 HOH A 126 626 156 HOH HOH . H 6 HOH A 127 627 218 HOH HOH . H 6 HOH A 128 628 187 HOH HOH . H 6 HOH A 129 629 145 HOH HOH . H 6 HOH A 130 630 7 HOH HOH . H 6 HOH A 131 631 280 HOH HOH . H 6 HOH A 132 632 159 HOH HOH . H 6 HOH A 133 633 222 HOH HOH . H 6 HOH A 134 634 239 HOH HOH . H 6 HOH A 135 635 261 HOH HOH . H 6 HOH A 136 636 73 HOH HOH . H 6 HOH A 137 637 252 HOH HOH . H 6 HOH A 138 638 9 HOH HOH . H 6 HOH A 139 639 15 HOH HOH . H 6 HOH A 140 640 108 HOH HOH . H 6 HOH A 141 641 288 HOH HOH . H 6 HOH A 142 642 101 HOH HOH . H 6 HOH A 143 643 243 HOH HOH . H 6 HOH A 144 644 188 HOH HOH . H 6 HOH A 145 645 102 HOH HOH . H 6 HOH A 146 646 37 HOH HOH . H 6 HOH A 147 647 204 HOH HOH . H 6 HOH A 148 648 105 HOH HOH . H 6 HOH A 149 649 198 HOH HOH . H 6 HOH A 150 650 130 HOH HOH . H 6 HOH A 151 651 29 HOH HOH . H 6 HOH A 152 652 74 HOH HOH . H 6 HOH A 153 653 132 HOH HOH . H 6 HOH A 154 654 136 HOH HOH . H 6 HOH A 155 655 78 HOH HOH . H 6 HOH A 156 656 4 HOH HOH . H 6 HOH A 157 657 171 HOH HOH . H 6 HOH A 158 658 76 HOH HOH . H 6 HOH A 159 659 142 HOH HOH . H 6 HOH A 160 660 129 HOH HOH . H 6 HOH A 161 661 241 HOH HOH . H 6 HOH A 162 662 67 HOH HOH . H 6 HOH A 163 663 215 HOH HOH . H 6 HOH A 164 664 75 HOH HOH . H 6 HOH A 165 665 34 HOH HOH . H 6 HOH A 166 666 122 HOH HOH . H 6 HOH A 167 667 274 HOH HOH . H 6 HOH A 168 668 68 HOH HOH . H 6 HOH A 169 669 255 HOH HOH . H 6 HOH A 170 670 220 HOH HOH . H 6 HOH A 171 671 176 HOH HOH . H 6 HOH A 172 672 258 HOH HOH . H 6 HOH A 173 673 47 HOH HOH . H 6 HOH A 174 674 61 HOH HOH . H 6 HOH A 175 675 40 HOH HOH . H 6 HOH A 176 676 146 HOH HOH . H 6 HOH A 177 677 32 HOH HOH . H 6 HOH A 178 678 53 HOH HOH . H 6 HOH A 179 679 245 HOH HOH . H 6 HOH A 180 680 206 HOH HOH . H 6 HOH A 181 681 230 HOH HOH . H 6 HOH A 182 682 42 HOH HOH . H 6 HOH A 183 683 169 HOH HOH . H 6 HOH A 184 684 33 HOH HOH . H 6 HOH A 185 685 70 HOH HOH . H 6 HOH A 186 686 51 HOH HOH . H 6 HOH A 187 687 238 HOH HOH . H 6 HOH A 188 688 131 HOH HOH . H 6 HOH A 189 689 83 HOH HOH . H 6 HOH A 190 690 164 HOH HOH . H 6 HOH A 191 691 221 HOH HOH . H 6 HOH A 192 692 77 HOH HOH . H 6 HOH A 193 693 139 HOH HOH . H 6 HOH A 194 694 90 HOH HOH . H 6 HOH A 195 695 88 HOH HOH . H 6 HOH A 196 696 119 HOH HOH . H 6 HOH A 197 697 115 HOH HOH . H 6 HOH A 198 698 152 HOH HOH . H 6 HOH A 199 699 217 HOH HOH . H 6 HOH A 200 700 82 HOH HOH . H 6 HOH A 201 701 236 HOH HOH . H 6 HOH A 202 702 235 HOH HOH . H 6 HOH A 203 703 71 HOH HOH . H 6 HOH A 204 704 154 HOH HOH . H 6 HOH A 205 705 85 HOH HOH . H 6 HOH A 206 706 112 HOH HOH . H 6 HOH A 207 707 212 HOH HOH . H 6 HOH A 208 708 144 HOH HOH . H 6 HOH A 209 709 109 HOH HOH . H 6 HOH A 210 710 285 HOH HOH . H 6 HOH A 211 711 54 HOH HOH . H 6 HOH A 212 712 185 HOH HOH . H 6 HOH A 213 713 99 HOH HOH . H 6 HOH A 214 714 260 HOH HOH . H 6 HOH A 215 715 180 HOH HOH . H 6 HOH A 216 716 103 HOH HOH . H 6 HOH A 217 717 207 HOH HOH . H 6 HOH A 218 718 219 HOH HOH . H 6 HOH A 219 719 191 HOH HOH . H 6 HOH A 220 720 254 HOH HOH . H 6 HOH A 221 721 283 HOH HOH . H 6 HOH A 222 722 148 HOH HOH . H 6 HOH A 223 723 199 HOH HOH . H 6 HOH A 224 724 125 HOH HOH . H 6 HOH A 225 725 167 HOH HOH . H 6 HOH A 226 726 58 HOH HOH . H 6 HOH A 227 727 214 HOH HOH . H 6 HOH A 228 728 113 HOH HOH . H 6 HOH A 229 729 121 HOH HOH . H 6 HOH A 230 730 287 HOH HOH . H 6 HOH A 231 731 141 HOH HOH . H 6 HOH A 232 732 281 HOH HOH . H 6 HOH A 233 733 276 HOH HOH . H 6 HOH A 234 734 161 HOH HOH . H 6 HOH A 235 735 232 HOH HOH . H 6 HOH A 236 736 263 HOH HOH . H 6 HOH A 237 737 223 HOH HOH . H 6 HOH A 238 738 158 HOH HOH . H 6 HOH A 239 739 240 HOH HOH . H 6 HOH A 240 740 242 HOH HOH . H 6 HOH A 241 741 216 HOH HOH . H 6 HOH A 242 742 186 HOH HOH . H 6 HOH A 243 743 266 HOH HOH . H 6 HOH A 244 744 226 HOH HOH . H 6 HOH A 245 745 209 HOH HOH . H 6 HOH A 246 746 189 HOH HOH . H 6 HOH A 247 747 259 HOH HOH . H 6 HOH A 248 748 166 HOH HOH . H 6 HOH A 249 749 96 HOH HOH . H 6 HOH A 250 750 63 HOH HOH . H 6 HOH A 251 751 286 HOH HOH . H 6 HOH A 252 752 279 HOH HOH . H 6 HOH A 253 753 196 HOH HOH . H 6 HOH A 254 754 284 HOH HOH . H 6 HOH A 255 755 193 HOH HOH . H 6 HOH A 256 756 94 HOH HOH . H 6 HOH A 257 757 172 HOH HOH . H 6 HOH A 258 758 262 HOH HOH . H 6 HOH A 259 759 197 HOH HOH . H 6 HOH A 260 760 128 HOH HOH . H 6 HOH A 261 761 120 HOH HOH . H 6 HOH A 262 762 270 HOH HOH . H 6 HOH A 263 763 174 HOH HOH . H 6 HOH A 264 764 155 HOH HOH . H 6 HOH A 265 765 264 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 23.579 2.554 55.613 0.8 22.27 ? S DMS 403 A 1 HETATM 2 O O DMS . . . D 3 24.575 3.282 54.723 0.8 12.15 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . D 3 23.57 3.461 57.126 0.8 27.51 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . D 3 24.387 1.107 56.163 0.8 18.61 ? C2 DMS 403 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #