data_5RBZ # _model_server_result.job_id KFmsMmOzc7_eYP0j0AU6Hg _model_server_result.datetime_utc '2024-11-24 01:05:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5RBZ # _exptl.entry_id 5RBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.23 _cell.angle_gamma 90 _cell.entry_id 5RBZ _cell.length_a 45.395 _cell.length_b 72.718 _cell.length_c 52.655 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc1 I O1 PG4 . A PG4 408 1_555 J NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc2 I O2 PG4 . A PG4 408 1_555 J NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc3 I O5 PG4 . A PG4 408 1_555 J NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 144 n n C1 C2 GOL sing 145 n n C1 H11 GOL sing 146 n n C1 H12 GOL sing 147 n n O1 HO1 GOL sing 148 n n C2 O2 GOL sing 149 n n C2 C3 GOL sing 150 n n C2 H2 GOL sing 151 n n O2 HO2 GOL sing 152 n n C3 O3 GOL sing 153 n n C3 H31 GOL sing 154 n n C3 H32 GOL sing 155 n n O3 HO3 GOL sing 156 n n # _atom_sites.entry_id 5RBZ _atom_sites.fract_transf_matrix[1][1] 0.022029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007686 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013752 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R9S A 1 401 401 R9S XXX . C 3 DMS A 1 402 501 DMS DMS . D 3 DMS A 1 403 601 DMS DMS . E 4 GOL A 1 404 701 GOL GOL . F 4 GOL A 1 405 401 GOL GOL . G 4 GOL A 1 406 402 GOL GOL . H 5 ACT A 1 407 405 ACT ACT . I 6 PG4 A 1 408 407 PG4 PG4 . J 7 NA A 1 409 408 NA NA . K 8 HOH A 1 501 129 HOH HOH . K 8 HOH A 2 502 82 HOH HOH . K 8 HOH A 3 503 258 HOH HOH . K 8 HOH A 4 504 198 HOH HOH . K 8 HOH A 5 505 267 HOH HOH . K 8 HOH A 6 506 241 HOH HOH . K 8 HOH A 7 507 10 HOH HOH . K 8 HOH A 8 508 46 HOH HOH . K 8 HOH A 9 509 96 HOH HOH . K 8 HOH A 10 510 277 HOH HOH . K 8 HOH A 11 511 187 HOH HOH . K 8 HOH A 12 512 142 HOH HOH . K 8 HOH A 13 513 18 HOH HOH . K 8 HOH A 14 514 281 HOH HOH . K 8 HOH A 15 515 128 HOH HOH . K 8 HOH A 16 516 222 HOH HOH . K 8 HOH A 17 517 53 HOH HOH . K 8 HOH A 18 518 143 HOH HOH . K 8 HOH A 19 519 89 HOH HOH . K 8 HOH A 20 520 256 HOH HOH . K 8 HOH A 21 521 162 HOH HOH . K 8 HOH A 22 522 166 HOH HOH . K 8 HOH A 23 523 185 HOH HOH . K 8 HOH A 24 524 209 HOH HOH . K 8 HOH A 25 525 206 HOH HOH . K 8 HOH A 26 526 136 HOH HOH . K 8 HOH A 27 527 124 HOH HOH . K 8 HOH A 28 528 196 HOH HOH . K 8 HOH A 29 529 160 HOH HOH . K 8 HOH A 30 530 63 HOH HOH . K 8 HOH A 31 531 110 HOH HOH . K 8 HOH A 32 532 254 HOH HOH . K 8 HOH A 33 533 199 HOH HOH . K 8 HOH A 34 534 252 HOH HOH . K 8 HOH A 35 535 14 HOH HOH . K 8 HOH A 36 536 174 HOH HOH . K 8 HOH A 37 537 32 HOH HOH . K 8 HOH A 38 538 49 HOH HOH . K 8 HOH A 39 539 26 HOH HOH . K 8 HOH A 40 540 12 HOH HOH . K 8 HOH A 41 541 24 HOH HOH . K 8 HOH A 42 542 242 HOH HOH . K 8 HOH A 43 543 30 HOH HOH . K 8 HOH A 44 544 74 HOH HOH . K 8 HOH A 45 545 91 HOH HOH . K 8 HOH A 46 546 13 HOH HOH . K 8 HOH A 47 547 23 HOH HOH . K 8 HOH A 48 548 64 HOH HOH . K 8 HOH A 49 549 25 HOH HOH . K 8 HOH A 50 550 50 HOH HOH . K 8 HOH A 51 551 261 HOH HOH . K 8 HOH A 52 552 3 HOH HOH . K 8 HOH A 53 553 251 HOH HOH . K 8 HOH A 54 554 65 HOH HOH . K 8 HOH A 55 555 36 HOH HOH . K 8 HOH A 56 556 223 HOH HOH . K 8 HOH A 57 557 233 HOH HOH . K 8 HOH A 58 558 2 HOH HOH . K 8 HOH A 59 559 167 HOH HOH . K 8 HOH A 60 560 246 HOH HOH . K 8 HOH A 61 561 200 HOH HOH . K 8 HOH A 62 562 118 HOH HOH . K 8 HOH A 63 563 234 HOH HOH . K 8 HOH A 64 564 47 HOH HOH . K 8 HOH A 65 565 6 HOH HOH . K 8 HOH A 66 566 112 HOH HOH . K 8 HOH A 67 567 150 HOH HOH . K 8 HOH A 68 568 178 HOH HOH . K 8 HOH A 69 569 197 HOH HOH . K 8 HOH A 70 570 270 HOH HOH . K 8 HOH A 71 571 156 HOH HOH . K 8 HOH A 72 572 80 HOH HOH . K 8 HOH A 73 573 237 HOH HOH . K 8 HOH A 74 574 109 HOH HOH . K 8 HOH A 75 575 22 HOH HOH . K 8 HOH A 76 576 264 HOH HOH . K 8 HOH A 77 577 21 HOH HOH . K 8 HOH A 78 578 43 HOH HOH . K 8 HOH A 79 579 69 HOH HOH . K 8 HOH A 80 580 159 HOH HOH . K 8 HOH A 81 581 29 HOH HOH . K 8 HOH A 82 582 38 HOH HOH . K 8 HOH A 83 583 186 HOH HOH . K 8 HOH A 84 584 8 HOH HOH . K 8 HOH A 85 585 35 HOH HOH . K 8 HOH A 86 586 102 HOH HOH . K 8 HOH A 87 587 59 HOH HOH . K 8 HOH A 88 588 44 HOH HOH . K 8 HOH A 89 589 203 HOH HOH . K 8 HOH A 90 590 113 HOH HOH . K 8 HOH A 91 591 62 HOH HOH . K 8 HOH A 92 592 7 HOH HOH . K 8 HOH A 93 593 163 HOH HOH . K 8 HOH A 94 594 116 HOH HOH . K 8 HOH A 95 595 190 HOH HOH . K 8 HOH A 96 596 97 HOH HOH . K 8 HOH A 97 597 17 HOH HOH . K 8 HOH A 98 598 54 HOH HOH . K 8 HOH A 99 599 182 HOH HOH . K 8 HOH A 100 600 98 HOH HOH . K 8 HOH A 101 601 108 HOH HOH . K 8 HOH A 102 602 51 HOH HOH . K 8 HOH A 103 603 125 HOH HOH . K 8 HOH A 104 604 37 HOH HOH . K 8 HOH A 105 605 19 HOH HOH . K 8 HOH A 106 606 188 HOH HOH . K 8 HOH A 107 607 180 HOH HOH . K 8 HOH A 108 608 165 HOH HOH . K 8 HOH A 109 609 271 HOH HOH . K 8 HOH A 110 610 16 HOH HOH . K 8 HOH A 111 611 94 HOH HOH . K 8 HOH A 112 612 141 HOH HOH . K 8 HOH A 113 613 245 HOH HOH . K 8 HOH A 114 614 224 HOH HOH . K 8 HOH A 115 615 172 HOH HOH . K 8 HOH A 116 616 176 HOH HOH . K 8 HOH A 117 617 20 HOH HOH . K 8 HOH A 118 618 134 HOH HOH . K 8 HOH A 119 619 121 HOH HOH . K 8 HOH A 120 620 83 HOH HOH . K 8 HOH A 121 621 93 HOH HOH . K 8 HOH A 122 622 9 HOH HOH . K 8 HOH A 123 623 99 HOH HOH . K 8 HOH A 124 624 55 HOH HOH . K 8 HOH A 125 625 207 HOH HOH . K 8 HOH A 126 626 212 HOH HOH . K 8 HOH A 127 627 60 HOH HOH . K 8 HOH A 128 628 140 HOH HOH . K 8 HOH A 129 629 262 HOH HOH . K 8 HOH A 130 630 177 HOH HOH . K 8 HOH A 131 631 152 HOH HOH . K 8 HOH A 132 632 218 HOH HOH . K 8 HOH A 133 633 15 HOH HOH . K 8 HOH A 134 634 39 HOH HOH . K 8 HOH A 135 635 202 HOH HOH . K 8 HOH A 136 636 100 HOH HOH . K 8 HOH A 137 637 31 HOH HOH . K 8 HOH A 138 638 250 HOH HOH . K 8 HOH A 139 639 33 HOH HOH . K 8 HOH A 140 640 263 HOH HOH . K 8 HOH A 141 641 133 HOH HOH . K 8 HOH A 142 642 111 HOH HOH . K 8 HOH A 143 643 260 HOH HOH . K 8 HOH A 144 644 204 HOH HOH . K 8 HOH A 145 645 127 HOH HOH . K 8 HOH A 146 646 41 HOH HOH . K 8 HOH A 147 647 45 HOH HOH . K 8 HOH A 148 648 92 HOH HOH . K 8 HOH A 149 649 268 HOH HOH . K 8 HOH A 150 650 238 HOH HOH . K 8 HOH A 151 651 225 HOH HOH . K 8 HOH A 152 652 126 HOH HOH . K 8 HOH A 153 653 87 HOH HOH . K 8 HOH A 154 654 52 HOH HOH . K 8 HOH A 155 655 76 HOH HOH . K 8 HOH A 156 656 104 HOH HOH . K 8 HOH A 157 657 154 HOH HOH . K 8 HOH A 158 658 235 HOH HOH . K 8 HOH A 159 659 75 HOH HOH . K 8 HOH A 160 660 164 HOH HOH . K 8 HOH A 161 661 48 HOH HOH . K 8 HOH A 162 662 103 HOH HOH . K 8 HOH A 163 663 5 HOH HOH . K 8 HOH A 164 664 255 HOH HOH . K 8 HOH A 165 665 72 HOH HOH . K 8 HOH A 166 666 266 HOH HOH . K 8 HOH A 167 667 181 HOH HOH . K 8 HOH A 168 668 243 HOH HOH . K 8 HOH A 169 669 259 HOH HOH . K 8 HOH A 170 670 257 HOH HOH . K 8 HOH A 171 671 236 HOH HOH . K 8 HOH A 172 672 105 HOH HOH . K 8 HOH A 173 673 208 HOH HOH . K 8 HOH A 174 674 148 HOH HOH . K 8 HOH A 175 675 215 HOH HOH . K 8 HOH A 176 676 86 HOH HOH . K 8 HOH A 177 677 28 HOH HOH . K 8 HOH A 178 678 56 HOH HOH . K 8 HOH A 179 679 229 HOH HOH . K 8 HOH A 180 680 27 HOH HOH . K 8 HOH A 181 681 66 HOH HOH . K 8 HOH A 182 682 70 HOH HOH . K 8 HOH A 183 683 216 HOH HOH . K 8 HOH A 184 684 194 HOH HOH . K 8 HOH A 185 685 131 HOH HOH . K 8 HOH A 186 686 248 HOH HOH . K 8 HOH A 187 687 40 HOH HOH . K 8 HOH A 188 688 153 HOH HOH . K 8 HOH A 189 689 34 HOH HOH . K 8 HOH A 190 690 120 HOH HOH . K 8 HOH A 191 691 84 HOH HOH . K 8 HOH A 192 692 90 HOH HOH . K 8 HOH A 193 693 123 HOH HOH . K 8 HOH A 194 694 151 HOH HOH . K 8 HOH A 195 695 79 HOH HOH . K 8 HOH A 196 696 114 HOH HOH . K 8 HOH A 197 697 193 HOH HOH . K 8 HOH A 198 698 132 HOH HOH . K 8 HOH A 199 699 81 HOH HOH . K 8 HOH A 200 700 68 HOH HOH . K 8 HOH A 201 701 265 HOH HOH . K 8 HOH A 202 702 168 HOH HOH . K 8 HOH A 203 703 240 HOH HOH . K 8 HOH A 204 704 88 HOH HOH . K 8 HOH A 205 705 195 HOH HOH . K 8 HOH A 206 706 221 HOH HOH . K 8 HOH A 207 707 122 HOH HOH . K 8 HOH A 208 708 284 HOH HOH . K 8 HOH A 209 709 58 HOH HOH . K 8 HOH A 210 710 139 HOH HOH . K 8 HOH A 211 711 85 HOH HOH . K 8 HOH A 212 712 77 HOH HOH . K 8 HOH A 213 713 95 HOH HOH . K 8 HOH A 214 714 274 HOH HOH . K 8 HOH A 215 715 272 HOH HOH . K 8 HOH A 216 716 169 HOH HOH . K 8 HOH A 217 717 130 HOH HOH . K 8 HOH A 218 718 101 HOH HOH . K 8 HOH A 219 719 61 HOH HOH . K 8 HOH A 220 720 220 HOH HOH . K 8 HOH A 221 721 155 HOH HOH . K 8 HOH A 222 722 253 HOH HOH . K 8 HOH A 223 723 276 HOH HOH . K 8 HOH A 224 724 147 HOH HOH . K 8 HOH A 225 725 117 HOH HOH . K 8 HOH A 226 726 115 HOH HOH . K 8 HOH A 227 727 191 HOH HOH . K 8 HOH A 228 728 275 HOH HOH . K 8 HOH A 229 729 71 HOH HOH . K 8 HOH A 230 730 226 HOH HOH . K 8 HOH A 231 731 269 HOH HOH . K 8 HOH A 232 732 247 HOH HOH . K 8 HOH A 233 733 119 HOH HOH . K 8 HOH A 234 734 279 HOH HOH . K 8 HOH A 235 735 146 HOH HOH . K 8 HOH A 236 736 205 HOH HOH . K 8 HOH A 237 737 137 HOH HOH . K 8 HOH A 238 738 230 HOH HOH . K 8 HOH A 239 739 183 HOH HOH . K 8 HOH A 240 740 285 HOH HOH . K 8 HOH A 241 741 273 HOH HOH . K 8 HOH A 242 742 239 HOH HOH . K 8 HOH A 243 743 158 HOH HOH . K 8 HOH A 244 744 232 HOH HOH . K 8 HOH A 245 745 107 HOH HOH . K 8 HOH A 246 746 249 HOH HOH . K 8 HOH A 247 747 157 HOH HOH . K 8 HOH A 248 748 67 HOH HOH . K 8 HOH A 249 749 213 HOH HOH . K 8 HOH A 250 750 244 HOH HOH . K 8 HOH A 251 751 282 HOH HOH . K 8 HOH A 252 752 171 HOH HOH . K 8 HOH A 253 753 211 HOH HOH . K 8 HOH A 254 754 106 HOH HOH . K 8 HOH A 255 755 192 HOH HOH . K 8 HOH A 256 756 214 HOH HOH . K 8 HOH A 257 757 175 HOH HOH . K 8 HOH A 258 758 201 HOH HOH . K 8 HOH A 259 759 161 HOH HOH . K 8 HOH A 260 760 149 HOH HOH . K 8 HOH A 261 761 135 HOH HOH . K 8 HOH A 262 762 144 HOH HOH . K 8 HOH A 263 763 217 HOH HOH . K 8 HOH A 264 764 283 HOH HOH . K 8 HOH A 265 765 219 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 36.071 -3.072 38.303 0.73 17.69 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . F 4 37.165 -2.241 38.717 0.73 13.69 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . F 4 34.766 -2.323 38.065 0.73 16.85 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . F 4 34.979 -1.315 37.071 0.73 17.9 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . F 4 33.633 -3.248 37.671 0.73 21.29 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . F 4 33.891 -3.894 36.431 0.73 24.7 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #