data_5RBZ
#
_model_server_result.job_id            AyFtlwdzNhlt58VRof145A 
_model_server_result.datetime_utc      '2024-11-27 18:16:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5rbz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":409}' 
#
_entry.id    5RBZ 
#
_exptl.entry_id    5RBZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.23 
_cell.angle_gamma         90 
_cell.entry_id            5RBZ 
_cell.length_a            45.395 
_cell.length_b            72.718 
_cell.length_c            52.655 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RBZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc1 I O1 PG4 . A PG4 408 1_555 J NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc2 I O2 PG4 . A PG4 408 1_555 J NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? 
metalc ? metalc3 I O5 PG4 . A PG4 408 1_555 J NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5RBZ 
_atom_sites.fract_transf_matrix[1][1]    0.022029 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007686 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013752 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020114 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 R9S A 1 401 401 R9S XXX . 
C 3 DMS A 1 402 501 DMS DMS . 
D 3 DMS A 1 403 601 DMS DMS . 
E 4 GOL A 1 404 701 GOL GOL . 
F 4 GOL A 1 405 401 GOL GOL . 
G 4 GOL A 1 406 402 GOL GOL . 
H 5 ACT A 1 407 405 ACT ACT . 
I 6 PG4 A 1 408 407 PG4 PG4 . 
J 7 NA A 1 409 408 NA NA . 
K 8 HOH A 1 501 129 HOH HOH . 
K 8 HOH A 2 502 82 HOH HOH . 
K 8 HOH A 3 503 258 HOH HOH . 
K 8 HOH A 4 504 198 HOH HOH . 
K 8 HOH A 5 505 267 HOH HOH . 
K 8 HOH A 6 506 241 HOH HOH . 
K 8 HOH A 7 507 10 HOH HOH . 
K 8 HOH A 8 508 46 HOH HOH . 
K 8 HOH A 9 509 96 HOH HOH . 
K 8 HOH A 10 510 277 HOH HOH . 
K 8 HOH A 11 511 187 HOH HOH . 
K 8 HOH A 12 512 142 HOH HOH . 
K 8 HOH A 13 513 18 HOH HOH . 
K 8 HOH A 14 514 281 HOH HOH . 
K 8 HOH A 15 515 128 HOH HOH . 
K 8 HOH A 16 516 222 HOH HOH . 
K 8 HOH A 17 517 53 HOH HOH . 
K 8 HOH A 18 518 143 HOH HOH . 
K 8 HOH A 19 519 89 HOH HOH . 
K 8 HOH A 20 520 256 HOH HOH . 
K 8 HOH A 21 521 162 HOH HOH . 
K 8 HOH A 22 522 166 HOH HOH . 
K 8 HOH A 23 523 185 HOH HOH . 
K 8 HOH A 24 524 209 HOH HOH . 
K 8 HOH A 25 525 206 HOH HOH . 
K 8 HOH A 26 526 136 HOH HOH . 
K 8 HOH A 27 527 124 HOH HOH . 
K 8 HOH A 28 528 196 HOH HOH . 
K 8 HOH A 29 529 160 HOH HOH . 
K 8 HOH A 30 530 63 HOH HOH . 
K 8 HOH A 31 531 110 HOH HOH . 
K 8 HOH A 32 532 254 HOH HOH . 
K 8 HOH A 33 533 199 HOH HOH . 
K 8 HOH A 34 534 252 HOH HOH . 
K 8 HOH A 35 535 14 HOH HOH . 
K 8 HOH A 36 536 174 HOH HOH . 
K 8 HOH A 37 537 32 HOH HOH . 
K 8 HOH A 38 538 49 HOH HOH . 
K 8 HOH A 39 539 26 HOH HOH . 
K 8 HOH A 40 540 12 HOH HOH . 
K 8 HOH A 41 541 24 HOH HOH . 
K 8 HOH A 42 542 242 HOH HOH . 
K 8 HOH A 43 543 30 HOH HOH . 
K 8 HOH A 44 544 74 HOH HOH . 
K 8 HOH A 45 545 91 HOH HOH . 
K 8 HOH A 46 546 13 HOH HOH . 
K 8 HOH A 47 547 23 HOH HOH . 
K 8 HOH A 48 548 64 HOH HOH . 
K 8 HOH A 49 549 25 HOH HOH . 
K 8 HOH A 50 550 50 HOH HOH . 
K 8 HOH A 51 551 261 HOH HOH . 
K 8 HOH A 52 552 3 HOH HOH . 
K 8 HOH A 53 553 251 HOH HOH . 
K 8 HOH A 54 554 65 HOH HOH . 
K 8 HOH A 55 555 36 HOH HOH . 
K 8 HOH A 56 556 223 HOH HOH . 
K 8 HOH A 57 557 233 HOH HOH . 
K 8 HOH A 58 558 2 HOH HOH . 
K 8 HOH A 59 559 167 HOH HOH . 
K 8 HOH A 60 560 246 HOH HOH . 
K 8 HOH A 61 561 200 HOH HOH . 
K 8 HOH A 62 562 118 HOH HOH . 
K 8 HOH A 63 563 234 HOH HOH . 
K 8 HOH A 64 564 47 HOH HOH . 
K 8 HOH A 65 565 6 HOH HOH . 
K 8 HOH A 66 566 112 HOH HOH . 
K 8 HOH A 67 567 150 HOH HOH . 
K 8 HOH A 68 568 178 HOH HOH . 
K 8 HOH A 69 569 197 HOH HOH . 
K 8 HOH A 70 570 270 HOH HOH . 
K 8 HOH A 71 571 156 HOH HOH . 
K 8 HOH A 72 572 80 HOH HOH . 
K 8 HOH A 73 573 237 HOH HOH . 
K 8 HOH A 74 574 109 HOH HOH . 
K 8 HOH A 75 575 22 HOH HOH . 
K 8 HOH A 76 576 264 HOH HOH . 
K 8 HOH A 77 577 21 HOH HOH . 
K 8 HOH A 78 578 43 HOH HOH . 
K 8 HOH A 79 579 69 HOH HOH . 
K 8 HOH A 80 580 159 HOH HOH . 
K 8 HOH A 81 581 29 HOH HOH . 
K 8 HOH A 82 582 38 HOH HOH . 
K 8 HOH A 83 583 186 HOH HOH . 
K 8 HOH A 84 584 8 HOH HOH . 
K 8 HOH A 85 585 35 HOH HOH . 
K 8 HOH A 86 586 102 HOH HOH . 
K 8 HOH A 87 587 59 HOH HOH . 
K 8 HOH A 88 588 44 HOH HOH . 
K 8 HOH A 89 589 203 HOH HOH . 
K 8 HOH A 90 590 113 HOH HOH . 
K 8 HOH A 91 591 62 HOH HOH . 
K 8 HOH A 92 592 7 HOH HOH . 
K 8 HOH A 93 593 163 HOH HOH . 
K 8 HOH A 94 594 116 HOH HOH . 
K 8 HOH A 95 595 190 HOH HOH . 
K 8 HOH A 96 596 97 HOH HOH . 
K 8 HOH A 97 597 17 HOH HOH . 
K 8 HOH A 98 598 54 HOH HOH . 
K 8 HOH A 99 599 182 HOH HOH . 
K 8 HOH A 100 600 98 HOH HOH . 
K 8 HOH A 101 601 108 HOH HOH . 
K 8 HOH A 102 602 51 HOH HOH . 
K 8 HOH A 103 603 125 HOH HOH . 
K 8 HOH A 104 604 37 HOH HOH . 
K 8 HOH A 105 605 19 HOH HOH . 
K 8 HOH A 106 606 188 HOH HOH . 
K 8 HOH A 107 607 180 HOH HOH . 
K 8 HOH A 108 608 165 HOH HOH . 
K 8 HOH A 109 609 271 HOH HOH . 
K 8 HOH A 110 610 16 HOH HOH . 
K 8 HOH A 111 611 94 HOH HOH . 
K 8 HOH A 112 612 141 HOH HOH . 
K 8 HOH A 113 613 245 HOH HOH . 
K 8 HOH A 114 614 224 HOH HOH . 
K 8 HOH A 115 615 172 HOH HOH . 
K 8 HOH A 116 616 176 HOH HOH . 
K 8 HOH A 117 617 20 HOH HOH . 
K 8 HOH A 118 618 134 HOH HOH . 
K 8 HOH A 119 619 121 HOH HOH . 
K 8 HOH A 120 620 83 HOH HOH . 
K 8 HOH A 121 621 93 HOH HOH . 
K 8 HOH A 122 622 9 HOH HOH . 
K 8 HOH A 123 623 99 HOH HOH . 
K 8 HOH A 124 624 55 HOH HOH . 
K 8 HOH A 125 625 207 HOH HOH . 
K 8 HOH A 126 626 212 HOH HOH . 
K 8 HOH A 127 627 60 HOH HOH . 
K 8 HOH A 128 628 140 HOH HOH . 
K 8 HOH A 129 629 262 HOH HOH . 
K 8 HOH A 130 630 177 HOH HOH . 
K 8 HOH A 131 631 152 HOH HOH . 
K 8 HOH A 132 632 218 HOH HOH . 
K 8 HOH A 133 633 15 HOH HOH . 
K 8 HOH A 134 634 39 HOH HOH . 
K 8 HOH A 135 635 202 HOH HOH . 
K 8 HOH A 136 636 100 HOH HOH . 
K 8 HOH A 137 637 31 HOH HOH . 
K 8 HOH A 138 638 250 HOH HOH . 
K 8 HOH A 139 639 33 HOH HOH . 
K 8 HOH A 140 640 263 HOH HOH . 
K 8 HOH A 141 641 133 HOH HOH . 
K 8 HOH A 142 642 111 HOH HOH . 
K 8 HOH A 143 643 260 HOH HOH . 
K 8 HOH A 144 644 204 HOH HOH . 
K 8 HOH A 145 645 127 HOH HOH . 
K 8 HOH A 146 646 41 HOH HOH . 
K 8 HOH A 147 647 45 HOH HOH . 
K 8 HOH A 148 648 92 HOH HOH . 
K 8 HOH A 149 649 268 HOH HOH . 
K 8 HOH A 150 650 238 HOH HOH . 
K 8 HOH A 151 651 225 HOH HOH . 
K 8 HOH A 152 652 126 HOH HOH . 
K 8 HOH A 153 653 87 HOH HOH . 
K 8 HOH A 154 654 52 HOH HOH . 
K 8 HOH A 155 655 76 HOH HOH . 
K 8 HOH A 156 656 104 HOH HOH . 
K 8 HOH A 157 657 154 HOH HOH . 
K 8 HOH A 158 658 235 HOH HOH . 
K 8 HOH A 159 659 75 HOH HOH . 
K 8 HOH A 160 660 164 HOH HOH . 
K 8 HOH A 161 661 48 HOH HOH . 
K 8 HOH A 162 662 103 HOH HOH . 
K 8 HOH A 163 663 5 HOH HOH . 
K 8 HOH A 164 664 255 HOH HOH . 
K 8 HOH A 165 665 72 HOH HOH . 
K 8 HOH A 166 666 266 HOH HOH . 
K 8 HOH A 167 667 181 HOH HOH . 
K 8 HOH A 168 668 243 HOH HOH . 
K 8 HOH A 169 669 259 HOH HOH . 
K 8 HOH A 170 670 257 HOH HOH . 
K 8 HOH A 171 671 236 HOH HOH . 
K 8 HOH A 172 672 105 HOH HOH . 
K 8 HOH A 173 673 208 HOH HOH . 
K 8 HOH A 174 674 148 HOH HOH . 
K 8 HOH A 175 675 215 HOH HOH . 
K 8 HOH A 176 676 86 HOH HOH . 
K 8 HOH A 177 677 28 HOH HOH . 
K 8 HOH A 178 678 56 HOH HOH . 
K 8 HOH A 179 679 229 HOH HOH . 
K 8 HOH A 180 680 27 HOH HOH . 
K 8 HOH A 181 681 66 HOH HOH . 
K 8 HOH A 182 682 70 HOH HOH . 
K 8 HOH A 183 683 216 HOH HOH . 
K 8 HOH A 184 684 194 HOH HOH . 
K 8 HOH A 185 685 131 HOH HOH . 
K 8 HOH A 186 686 248 HOH HOH . 
K 8 HOH A 187 687 40 HOH HOH . 
K 8 HOH A 188 688 153 HOH HOH . 
K 8 HOH A 189 689 34 HOH HOH . 
K 8 HOH A 190 690 120 HOH HOH . 
K 8 HOH A 191 691 84 HOH HOH . 
K 8 HOH A 192 692 90 HOH HOH . 
K 8 HOH A 193 693 123 HOH HOH . 
K 8 HOH A 194 694 151 HOH HOH . 
K 8 HOH A 195 695 79 HOH HOH . 
K 8 HOH A 196 696 114 HOH HOH . 
K 8 HOH A 197 697 193 HOH HOH . 
K 8 HOH A 198 698 132 HOH HOH . 
K 8 HOH A 199 699 81 HOH HOH . 
K 8 HOH A 200 700 68 HOH HOH . 
K 8 HOH A 201 701 265 HOH HOH . 
K 8 HOH A 202 702 168 HOH HOH . 
K 8 HOH A 203 703 240 HOH HOH . 
K 8 HOH A 204 704 88 HOH HOH . 
K 8 HOH A 205 705 195 HOH HOH . 
K 8 HOH A 206 706 221 HOH HOH . 
K 8 HOH A 207 707 122 HOH HOH . 
K 8 HOH A 208 708 284 HOH HOH . 
K 8 HOH A 209 709 58 HOH HOH . 
K 8 HOH A 210 710 139 HOH HOH . 
K 8 HOH A 211 711 85 HOH HOH . 
K 8 HOH A 212 712 77 HOH HOH . 
K 8 HOH A 213 713 95 HOH HOH . 
K 8 HOH A 214 714 274 HOH HOH . 
K 8 HOH A 215 715 272 HOH HOH . 
K 8 HOH A 216 716 169 HOH HOH . 
K 8 HOH A 217 717 130 HOH HOH . 
K 8 HOH A 218 718 101 HOH HOH . 
K 8 HOH A 219 719 61 HOH HOH . 
K 8 HOH A 220 720 220 HOH HOH . 
K 8 HOH A 221 721 155 HOH HOH . 
K 8 HOH A 222 722 253 HOH HOH . 
K 8 HOH A 223 723 276 HOH HOH . 
K 8 HOH A 224 724 147 HOH HOH . 
K 8 HOH A 225 725 117 HOH HOH . 
K 8 HOH A 226 726 115 HOH HOH . 
K 8 HOH A 227 727 191 HOH HOH . 
K 8 HOH A 228 728 275 HOH HOH . 
K 8 HOH A 229 729 71 HOH HOH . 
K 8 HOH A 230 730 226 HOH HOH . 
K 8 HOH A 231 731 269 HOH HOH . 
K 8 HOH A 232 732 247 HOH HOH . 
K 8 HOH A 233 733 119 HOH HOH . 
K 8 HOH A 234 734 279 HOH HOH . 
K 8 HOH A 235 735 146 HOH HOH . 
K 8 HOH A 236 736 205 HOH HOH . 
K 8 HOH A 237 737 137 HOH HOH . 
K 8 HOH A 238 738 230 HOH HOH . 
K 8 HOH A 239 739 183 HOH HOH . 
K 8 HOH A 240 740 285 HOH HOH . 
K 8 HOH A 241 741 273 HOH HOH . 
K 8 HOH A 242 742 239 HOH HOH . 
K 8 HOH A 243 743 158 HOH HOH . 
K 8 HOH A 244 744 232 HOH HOH . 
K 8 HOH A 245 745 107 HOH HOH . 
K 8 HOH A 246 746 249 HOH HOH . 
K 8 HOH A 247 747 157 HOH HOH . 
K 8 HOH A 248 748 67 HOH HOH . 
K 8 HOH A 249 749 213 HOH HOH . 
K 8 HOH A 250 750 244 HOH HOH . 
K 8 HOH A 251 751 282 HOH HOH . 
K 8 HOH A 252 752 171 HOH HOH . 
K 8 HOH A 253 753 211 HOH HOH . 
K 8 HOH A 254 754 106 HOH HOH . 
K 8 HOH A 255 755 192 HOH HOH . 
K 8 HOH A 256 756 214 HOH HOH . 
K 8 HOH A 257 757 175 HOH HOH . 
K 8 HOH A 258 758 201 HOH HOH . 
K 8 HOH A 259 759 161 HOH HOH . 
K 8 HOH A 260 760 149 HOH HOH . 
K 8 HOH A 261 761 135 HOH HOH . 
K 8 HOH A 262 762 144 HOH HOH . 
K 8 HOH A 263 763 217 HOH HOH . 
K 8 HOH A 264 764 283 HOH HOH . 
K 8 HOH A 265 765 219 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               17.151 
_atom_site.Cartn_y               3.872 
_atom_site.Cartn_z               52.017 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        76.27 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           409 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#