data_5RC1 # _model_server_result.job_id LvlmHzM0cuWySKhZbfP1yg _model_server_result.datetime_utc '2024-10-18 19:31:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5RC1 # _exptl.entry_id 5RC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.33 _cell.angle_gamma 90 _cell.entry_id 5RC1 _cell.length_a 45.341 _cell.length_b 73.185 _cell.length_c 52.587 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc1 H O2 PG4 . A PG4 407 1_555 I NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc2 H O3 PG4 . A PG4 407 1_555 I NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc3 H O5 PG4 . A PG4 407 1_555 I NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 5RC1 _atom_sites.fract_transf_matrix[1][1] 0.022055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007738 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R9Y A 1 401 401 R9Y XXX . C 3 DMS A 1 402 501 DMS DMS . D 4 GOL A 1 403 601 GOL GOL . E 4 GOL A 1 404 401 GOL GOL . F 4 GOL A 1 405 402 GOL GOL . G 5 ACT A 1 406 405 ACT ACT . H 6 PG4 A 1 407 407 PG4 PG4 . I 7 NA A 1 408 408 NA NA . J 8 HOH A 1 501 163 HOH HOH . J 8 HOH A 2 502 113 HOH HOH . J 8 HOH A 3 503 187 HOH HOH . J 8 HOH A 4 504 110 HOH HOH . J 8 HOH A 5 505 223 HOH HOH . J 8 HOH A 6 506 35 HOH HOH . J 8 HOH A 7 507 126 HOH HOH . J 8 HOH A 8 508 31 HOH HOH . J 8 HOH A 9 509 142 HOH HOH . J 8 HOH A 10 510 178 HOH HOH . J 8 HOH A 11 511 207 HOH HOH . J 8 HOH A 12 512 147 HOH HOH . J 8 HOH A 13 513 200 HOH HOH . J 8 HOH A 14 514 205 HOH HOH . J 8 HOH A 15 515 100 HOH HOH . J 8 HOH A 16 516 150 HOH HOH . J 8 HOH A 17 517 149 HOH HOH . J 8 HOH A 18 518 144 HOH HOH . J 8 HOH A 19 519 168 HOH HOH . J 8 HOH A 20 520 93 HOH HOH . J 8 HOH A 21 521 64 HOH HOH . J 8 HOH A 22 522 146 HOH HOH . J 8 HOH A 23 523 33 HOH HOH . J 8 HOH A 24 524 49 HOH HOH . J 8 HOH A 25 525 198 HOH HOH . J 8 HOH A 26 526 128 HOH HOH . J 8 HOH A 27 527 69 HOH HOH . J 8 HOH A 28 528 88 HOH HOH . J 8 HOH A 29 529 26 HOH HOH . J 8 HOH A 30 530 12 HOH HOH . J 8 HOH A 31 531 16 HOH HOH . J 8 HOH A 32 532 197 HOH HOH . J 8 HOH A 33 533 79 HOH HOH . J 8 HOH A 34 534 84 HOH HOH . J 8 HOH A 35 535 204 HOH HOH . J 8 HOH A 36 536 161 HOH HOH . J 8 HOH A 37 537 28 HOH HOH . J 8 HOH A 38 538 164 HOH HOH . J 8 HOH A 39 539 32 HOH HOH . J 8 HOH A 40 540 19 HOH HOH . J 8 HOH A 41 541 41 HOH HOH . J 8 HOH A 42 542 37 HOH HOH . J 8 HOH A 43 543 50 HOH HOH . J 8 HOH A 44 544 95 HOH HOH . J 8 HOH A 45 545 155 HOH HOH . J 8 HOH A 46 546 27 HOH HOH . J 8 HOH A 47 547 184 HOH HOH . J 8 HOH A 48 548 39 HOH HOH . J 8 HOH A 49 549 189 HOH HOH . J 8 HOH A 50 550 62 HOH HOH . J 8 HOH A 51 551 73 HOH HOH . J 8 HOH A 52 552 2 HOH HOH . J 8 HOH A 53 553 42 HOH HOH . J 8 HOH A 54 554 3 HOH HOH . J 8 HOH A 55 555 214 HOH HOH . J 8 HOH A 56 556 47 HOH HOH . J 8 HOH A 57 557 152 HOH HOH . J 8 HOH A 58 558 45 HOH HOH . J 8 HOH A 59 559 106 HOH HOH . J 8 HOH A 60 560 11 HOH HOH . J 8 HOH A 61 561 8 HOH HOH . J 8 HOH A 62 562 76 HOH HOH . J 8 HOH A 63 563 29 HOH HOH . J 8 HOH A 64 564 174 HOH HOH . J 8 HOH A 65 565 212 HOH HOH . J 8 HOH A 66 566 52 HOH HOH . J 8 HOH A 67 567 53 HOH HOH . J 8 HOH A 68 568 151 HOH HOH . J 8 HOH A 69 569 13 HOH HOH . J 8 HOH A 70 570 17 HOH HOH . J 8 HOH A 71 571 18 HOH HOH . J 8 HOH A 72 572 40 HOH HOH . J 8 HOH A 73 573 171 HOH HOH . J 8 HOH A 74 574 36 HOH HOH . J 8 HOH A 75 575 180 HOH HOH . J 8 HOH A 76 576 92 HOH HOH . J 8 HOH A 77 577 23 HOH HOH . J 8 HOH A 78 578 188 HOH HOH . J 8 HOH A 79 579 55 HOH HOH . J 8 HOH A 80 580 43 HOH HOH . J 8 HOH A 81 581 7 HOH HOH . J 8 HOH A 82 582 167 HOH HOH . J 8 HOH A 83 583 158 HOH HOH . J 8 HOH A 84 584 5 HOH HOH . J 8 HOH A 85 585 135 HOH HOH . J 8 HOH A 86 586 21 HOH HOH . J 8 HOH A 87 587 30 HOH HOH . J 8 HOH A 88 588 134 HOH HOH . J 8 HOH A 89 589 125 HOH HOH . J 8 HOH A 90 590 105 HOH HOH . J 8 HOH A 91 591 114 HOH HOH . J 8 HOH A 92 592 83 HOH HOH . J 8 HOH A 93 593 10 HOH HOH . J 8 HOH A 94 594 177 HOH HOH . J 8 HOH A 95 595 103 HOH HOH . J 8 HOH A 96 596 101 HOH HOH . J 8 HOH A 97 597 102 HOH HOH . J 8 HOH A 98 598 90 HOH HOH . J 8 HOH A 99 599 98 HOH HOH . J 8 HOH A 100 600 116 HOH HOH . J 8 HOH A 101 601 129 HOH HOH . J 8 HOH A 102 602 176 HOH HOH . J 8 HOH A 103 603 127 HOH HOH . J 8 HOH A 104 604 38 HOH HOH . J 8 HOH A 105 605 15 HOH HOH . J 8 HOH A 106 606 48 HOH HOH . J 8 HOH A 107 607 91 HOH HOH . J 8 HOH A 108 608 14 HOH HOH . J 8 HOH A 109 609 96 HOH HOH . J 8 HOH A 110 610 9 HOH HOH . J 8 HOH A 111 611 203 HOH HOH . J 8 HOH A 112 612 124 HOH HOH . J 8 HOH A 113 613 87 HOH HOH . J 8 HOH A 114 614 191 HOH HOH . J 8 HOH A 115 615 153 HOH HOH . J 8 HOH A 116 616 6 HOH HOH . J 8 HOH A 117 617 74 HOH HOH . J 8 HOH A 118 618 94 HOH HOH . J 8 HOH A 119 619 24 HOH HOH . J 8 HOH A 120 620 61 HOH HOH . J 8 HOH A 121 621 58 HOH HOH . J 8 HOH A 122 622 140 HOH HOH . J 8 HOH A 123 623 117 HOH HOH . J 8 HOH A 124 624 209 HOH HOH . J 8 HOH A 125 625 130 HOH HOH . J 8 HOH A 126 626 195 HOH HOH . J 8 HOH A 127 627 108 HOH HOH . J 8 HOH A 128 628 118 HOH HOH . J 8 HOH A 129 629 59 HOH HOH . J 8 HOH A 130 630 68 HOH HOH . J 8 HOH A 131 631 202 HOH HOH . J 8 HOH A 132 632 112 HOH HOH . J 8 HOH A 133 633 154 HOH HOH . J 8 HOH A 134 634 217 HOH HOH . J 8 HOH A 135 635 120 HOH HOH . J 8 HOH A 136 636 60 HOH HOH . J 8 HOH A 137 637 122 HOH HOH . J 8 HOH A 138 638 4 HOH HOH . J 8 HOH A 139 639 46 HOH HOH . J 8 HOH A 140 640 81 HOH HOH . J 8 HOH A 141 641 190 HOH HOH . J 8 HOH A 142 642 63 HOH HOH . J 8 HOH A 143 643 213 HOH HOH . J 8 HOH A 144 644 123 HOH HOH . J 8 HOH A 145 645 20 HOH HOH . J 8 HOH A 146 646 201 HOH HOH . J 8 HOH A 147 647 75 HOH HOH . J 8 HOH A 148 648 172 HOH HOH . J 8 HOH A 149 649 25 HOH HOH . J 8 HOH A 150 650 220 HOH HOH . J 8 HOH A 151 651 22 HOH HOH . J 8 HOH A 152 652 86 HOH HOH . J 8 HOH A 153 653 175 HOH HOH . J 8 HOH A 154 654 132 HOH HOH . J 8 HOH A 155 655 192 HOH HOH . J 8 HOH A 156 656 111 HOH HOH . J 8 HOH A 157 657 72 HOH HOH . J 8 HOH A 158 658 56 HOH HOH . J 8 HOH A 159 659 219 HOH HOH . J 8 HOH A 160 660 51 HOH HOH . J 8 HOH A 161 661 57 HOH HOH . J 8 HOH A 162 662 85 HOH HOH . J 8 HOH A 163 663 119 HOH HOH . J 8 HOH A 164 664 170 HOH HOH . J 8 HOH A 165 665 194 HOH HOH . J 8 HOH A 166 666 44 HOH HOH . J 8 HOH A 167 667 193 HOH HOH . J 8 HOH A 168 668 77 HOH HOH . J 8 HOH A 169 669 65 HOH HOH . J 8 HOH A 170 670 137 HOH HOH . J 8 HOH A 171 671 82 HOH HOH . J 8 HOH A 172 672 196 HOH HOH . J 8 HOH A 173 673 222 HOH HOH . J 8 HOH A 174 674 199 HOH HOH . J 8 HOH A 175 675 156 HOH HOH . J 8 HOH A 176 676 54 HOH HOH . J 8 HOH A 177 677 224 HOH HOH . J 8 HOH A 178 678 215 HOH HOH . J 8 HOH A 179 679 138 HOH HOH . J 8 HOH A 180 680 89 HOH HOH . J 8 HOH A 181 681 97 HOH HOH . J 8 HOH A 182 682 139 HOH HOH . J 8 HOH A 183 683 216 HOH HOH . J 8 HOH A 184 684 66 HOH HOH . J 8 HOH A 185 685 78 HOH HOH . J 8 HOH A 186 686 165 HOH HOH . J 8 HOH A 187 687 115 HOH HOH . J 8 HOH A 188 688 145 HOH HOH . J 8 HOH A 189 689 186 HOH HOH . J 8 HOH A 190 690 67 HOH HOH . J 8 HOH A 191 691 133 HOH HOH . J 8 HOH A 192 692 71 HOH HOH . J 8 HOH A 193 693 210 HOH HOH . J 8 HOH A 194 694 121 HOH HOH . J 8 HOH A 195 695 107 HOH HOH . J 8 HOH A 196 696 183 HOH HOH . J 8 HOH A 197 697 143 HOH HOH . J 8 HOH A 198 698 109 HOH HOH . J 8 HOH A 199 699 206 HOH HOH . J 8 HOH A 200 700 218 HOH HOH . J 8 HOH A 201 701 160 HOH HOH . J 8 HOH A 202 702 162 HOH HOH . J 8 HOH A 203 703 179 HOH HOH . J 8 HOH A 204 704 104 HOH HOH . J 8 HOH A 205 705 141 HOH HOH . J 8 HOH A 206 706 70 HOH HOH . J 8 HOH A 207 707 173 HOH HOH . J 8 HOH A 208 708 136 HOH HOH . J 8 HOH A 209 709 99 HOH HOH . J 8 HOH A 210 710 131 HOH HOH . J 8 HOH A 211 711 181 HOH HOH . J 8 HOH A 212 712 159 HOH HOH . J 8 HOH A 213 713 169 HOH HOH . J 8 HOH A 214 714 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . F 4 29.167 19.81 49.503 0.5 27.16 ? C1 GOL 405 A 1 HETATM 2 C C1 GOL . B . F 4 29.21 19.162 49.43 0.5 34.42 ? C1 GOL 405 A 1 HETATM 3 O O1 GOL . A . F 4 29.355 21.042 48.814 0.5 18.93 ? O1 GOL 405 A 1 HETATM 4 O O1 GOL . B . F 4 27.879 19.239 49.934 0.5 23.52 ? O1 GOL 405 A 1 HETATM 5 C C2 GOL . A . F 4 29.746 19.862 50.891 0.5 27.62 ? C2 GOL 405 A 1 HETATM 6 C C2 GOL . B . F 4 30.241 19.573 50.454 0.5 36.56 ? C2 GOL 405 A 1 HETATM 7 O O2 GOL . A . F 4 28.973 20.733 51.723 0.5 30.77 ? O2 GOL 405 A 1 HETATM 8 O O2 GOL . B . F 4 30.141 20.979 50.676 0.5 40.33 ? O2 GOL 405 A 1 HETATM 9 C C3 GOL . A . F 4 29.847 18.499 51.538 0.5 25.56 ? C3 GOL 405 A 1 HETATM 10 C C3 GOL . B . F 4 30.131 18.811 51.763 0.5 38.31 ? C3 GOL 405 A 1 HETATM 11 O O3 GOL . A . F 4 28.68 18.201 52.288 0.5 29.16 ? O3 GOL 405 A 1 HETATM 12 O O3 GOL . B . F 4 29.005 19.225 52.533 0.5 41.33 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #