data_5RC2 # _model_server_result.job_id hG0VQNU-oN7t77khp20mgA _model_server_result.datetime_utc '2024-11-23 02:51:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5RC2 # _exptl.entry_id 5RC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.95 _cell.angle_gamma 90 _cell.entry_id 5RC2 _cell.length_a 45.23 _cell.length_b 73.009 _cell.length_c 52.512 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.015 ? disulf ? disulf3 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? C ? ? C ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? D ? ? D ? ? ? ? ? ? ? 2.048 ? metalc ? metalc1 F O2 PG4 . A PG4 405 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc2 F O4 PG4 . A PG4 405 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc3 F O5 PG4 . A PG4 405 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5RC2 _atom_sites.fract_transf_matrix[1][1] 0.022109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00759 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R8Y A 1 401 401 R8Y XXX . C 3 DMS A 1 402 501 DMS DMS . D 4 GOL A 1 403 401 GOL GOL . E 4 GOL A 1 404 402 GOL GOL . F 5 PG4 A 1 405 407 PG4 PG4 . G 6 NA A 1 406 408 NA NA . H 7 HOH A 1 501 103 HOH HOH . H 7 HOH A 2 502 237 HOH HOH . H 7 HOH A 3 503 147 HOH HOH . H 7 HOH A 4 504 214 HOH HOH . H 7 HOH A 5 505 219 HOH HOH . H 7 HOH A 6 506 21 HOH HOH . H 7 HOH A 7 507 17 HOH HOH . H 7 HOH A 8 508 221 HOH HOH . H 7 HOH A 9 509 118 HOH HOH . H 7 HOH A 10 510 164 HOH HOH . H 7 HOH A 11 511 239 HOH HOH . H 7 HOH A 12 512 54 HOH HOH . H 7 HOH A 13 513 155 HOH HOH . H 7 HOH A 14 514 8 HOH HOH . H 7 HOH A 15 515 50 HOH HOH . H 7 HOH A 16 516 77 HOH HOH . H 7 HOH A 17 517 28 HOH HOH . H 7 HOH A 18 518 185 HOH HOH . H 7 HOH A 19 519 22 HOH HOH . H 7 HOH A 20 520 181 HOH HOH . H 7 HOH A 21 521 119 HOH HOH . H 7 HOH A 22 522 62 HOH HOH . H 7 HOH A 23 523 224 HOH HOH . H 7 HOH A 24 524 117 HOH HOH . H 7 HOH A 25 525 128 HOH HOH . H 7 HOH A 26 526 145 HOH HOH . H 7 HOH A 27 527 40 HOH HOH . H 7 HOH A 28 528 194 HOH HOH . H 7 HOH A 29 529 206 HOH HOH . H 7 HOH A 30 530 101 HOH HOH . H 7 HOH A 31 531 157 HOH HOH . H 7 HOH A 32 532 109 HOH HOH . H 7 HOH A 33 533 162 HOH HOH . H 7 HOH A 34 534 235 HOH HOH . H 7 HOH A 35 535 55 HOH HOH . H 7 HOH A 36 536 96 HOH HOH . H 7 HOH A 37 537 234 HOH HOH . H 7 HOH A 38 538 167 HOH HOH . H 7 HOH A 39 539 79 HOH HOH . H 7 HOH A 40 540 66 HOH HOH . H 7 HOH A 41 541 29 HOH HOH . H 7 HOH A 42 542 9 HOH HOH . H 7 HOH A 43 543 16 HOH HOH . H 7 HOH A 44 544 114 HOH HOH . H 7 HOH A 45 545 75 HOH HOH . H 7 HOH A 46 546 199 HOH HOH . H 7 HOH A 47 547 25 HOH HOH . H 7 HOH A 48 548 233 HOH HOH . H 7 HOH A 49 549 53 HOH HOH . H 7 HOH A 50 550 215 HOH HOH . H 7 HOH A 51 551 154 HOH HOH . H 7 HOH A 52 552 24 HOH HOH . H 7 HOH A 53 553 51 HOH HOH . H 7 HOH A 54 554 177 HOH HOH . H 7 HOH A 55 555 23 HOH HOH . H 7 HOH A 56 556 112 HOH HOH . H 7 HOH A 57 557 56 HOH HOH . H 7 HOH A 58 558 148 HOH HOH . H 7 HOH A 59 559 163 HOH HOH . H 7 HOH A 60 560 230 HOH HOH . H 7 HOH A 61 561 124 HOH HOH . H 7 HOH A 62 562 31 HOH HOH . H 7 HOH A 63 563 170 HOH HOH . H 7 HOH A 64 564 150 HOH HOH . H 7 HOH A 65 565 71 HOH HOH . H 7 HOH A 66 566 213 HOH HOH . H 7 HOH A 67 567 35 HOH HOH . H 7 HOH A 68 568 126 HOH HOH . H 7 HOH A 69 569 58 HOH HOH . H 7 HOH A 70 570 212 HOH HOH . H 7 HOH A 71 571 210 HOH HOH . H 7 HOH A 72 572 149 HOH HOH . H 7 HOH A 73 573 26 HOH HOH . H 7 HOH A 74 574 6 HOH HOH . H 7 HOH A 75 575 13 HOH HOH . H 7 HOH A 76 576 52 HOH HOH . H 7 HOH A 77 577 172 HOH HOH . H 7 HOH A 78 578 48 HOH HOH . H 7 HOH A 79 579 175 HOH HOH . H 7 HOH A 80 580 12 HOH HOH . H 7 HOH A 81 581 186 HOH HOH . H 7 HOH A 82 582 122 HOH HOH . H 7 HOH A 83 583 4 HOH HOH . H 7 HOH A 84 584 59 HOH HOH . H 7 HOH A 85 585 67 HOH HOH . H 7 HOH A 86 586 41 HOH HOH . H 7 HOH A 87 587 151 HOH HOH . H 7 HOH A 88 588 7 HOH HOH . H 7 HOH A 89 589 39 HOH HOH . H 7 HOH A 90 590 228 HOH HOH . H 7 HOH A 91 591 91 HOH HOH . H 7 HOH A 92 592 123 HOH HOH . H 7 HOH A 93 593 139 HOH HOH . H 7 HOH A 94 594 3 HOH HOH . H 7 HOH A 95 595 14 HOH HOH . H 7 HOH A 96 596 173 HOH HOH . H 7 HOH A 97 597 136 HOH HOH . H 7 HOH A 98 598 141 HOH HOH . H 7 HOH A 99 599 111 HOH HOH . H 7 HOH A 100 600 116 HOH HOH . H 7 HOH A 101 601 78 HOH HOH . H 7 HOH A 102 602 46 HOH HOH . H 7 HOH A 103 603 88 HOH HOH . H 7 HOH A 104 604 129 HOH HOH . H 7 HOH A 105 605 176 HOH HOH . H 7 HOH A 106 606 216 HOH HOH . H 7 HOH A 107 607 179 HOH HOH . H 7 HOH A 108 608 42 HOH HOH . H 7 HOH A 109 609 92 HOH HOH . H 7 HOH A 110 610 34 HOH HOH . H 7 HOH A 111 611 97 HOH HOH . H 7 HOH A 112 612 127 HOH HOH . H 7 HOH A 113 613 33 HOH HOH . H 7 HOH A 114 614 63 HOH HOH . H 7 HOH A 115 615 171 HOH HOH . H 7 HOH A 116 616 168 HOH HOH . H 7 HOH A 117 617 19 HOH HOH . H 7 HOH A 118 618 85 HOH HOH . H 7 HOH A 119 619 36 HOH HOH . H 7 HOH A 120 620 100 HOH HOH . H 7 HOH A 121 621 18 HOH HOH . H 7 HOH A 122 622 57 HOH HOH . H 7 HOH A 123 623 64 HOH HOH . H 7 HOH A 124 624 10 HOH HOH . H 7 HOH A 125 625 113 HOH HOH . H 7 HOH A 126 626 205 HOH HOH . H 7 HOH A 127 627 218 HOH HOH . H 7 HOH A 128 628 94 HOH HOH . H 7 HOH A 129 629 15 HOH HOH . H 7 HOH A 130 630 204 HOH HOH . H 7 HOH A 131 631 201 HOH HOH . H 7 HOH A 132 632 184 HOH HOH . H 7 HOH A 133 633 133 HOH HOH . H 7 HOH A 134 634 226 HOH HOH . H 7 HOH A 135 635 99 HOH HOH . H 7 HOH A 136 636 89 HOH HOH . H 7 HOH A 137 637 231 HOH HOH . H 7 HOH A 138 638 72 HOH HOH . H 7 HOH A 139 639 104 HOH HOH . H 7 HOH A 140 640 69 HOH HOH . H 7 HOH A 141 641 60 HOH HOH . H 7 HOH A 142 642 165 HOH HOH . H 7 HOH A 143 643 5 HOH HOH . H 7 HOH A 144 644 27 HOH HOH . H 7 HOH A 145 645 83 HOH HOH . H 7 HOH A 146 646 95 HOH HOH . H 7 HOH A 147 647 130 HOH HOH . H 7 HOH A 148 648 200 HOH HOH . H 7 HOH A 149 649 121 HOH HOH . H 7 HOH A 150 650 44 HOH HOH . H 7 HOH A 151 651 142 HOH HOH . H 7 HOH A 152 652 203 HOH HOH . H 7 HOH A 153 653 225 HOH HOH . H 7 HOH A 154 654 105 HOH HOH . H 7 HOH A 155 655 37 HOH HOH . H 7 HOH A 156 656 68 HOH HOH . H 7 HOH A 157 657 222 HOH HOH . H 7 HOH A 158 658 180 HOH HOH . H 7 HOH A 159 659 45 HOH HOH . H 7 HOH A 160 660 131 HOH HOH . H 7 HOH A 161 661 110 HOH HOH . H 7 HOH A 162 662 84 HOH HOH . H 7 HOH A 163 663 108 HOH HOH . H 7 HOH A 164 664 211 HOH HOH . H 7 HOH A 165 665 49 HOH HOH . H 7 HOH A 166 666 20 HOH HOH . H 7 HOH A 167 667 178 HOH HOH . H 7 HOH A 168 668 30 HOH HOH . H 7 HOH A 169 669 152 HOH HOH . H 7 HOH A 170 670 65 HOH HOH . H 7 HOH A 171 671 73 HOH HOH . H 7 HOH A 172 672 143 HOH HOH . H 7 HOH A 173 673 90 HOH HOH . H 7 HOH A 174 674 38 HOH HOH . H 7 HOH A 175 675 158 HOH HOH . H 7 HOH A 176 676 61 HOH HOH . H 7 HOH A 177 677 187 HOH HOH . H 7 HOH A 178 678 132 HOH HOH . H 7 HOH A 179 679 227 HOH HOH . H 7 HOH A 180 680 188 HOH HOH . H 7 HOH A 181 681 80 HOH HOH . H 7 HOH A 182 682 32 HOH HOH . H 7 HOH A 183 683 87 HOH HOH . H 7 HOH A 184 684 208 HOH HOH . H 7 HOH A 185 685 223 HOH HOH . H 7 HOH A 186 686 191 HOH HOH . H 7 HOH A 187 687 86 HOH HOH . H 7 HOH A 188 688 229 HOH HOH . H 7 HOH A 189 689 195 HOH HOH . H 7 HOH A 190 690 161 HOH HOH . H 7 HOH A 191 691 125 HOH HOH . H 7 HOH A 192 692 134 HOH HOH . H 7 HOH A 193 693 120 HOH HOH . H 7 HOH A 194 694 238 HOH HOH . H 7 HOH A 195 695 81 HOH HOH . H 7 HOH A 196 696 135 HOH HOH . H 7 HOH A 197 697 93 HOH HOH . H 7 HOH A 198 698 190 HOH HOH . H 7 HOH A 199 699 47 HOH HOH . H 7 HOH A 200 700 82 HOH HOH . H 7 HOH A 201 701 74 HOH HOH . H 7 HOH A 202 702 197 HOH HOH . H 7 HOH A 203 703 202 HOH HOH . H 7 HOH A 204 704 146 HOH HOH . H 7 HOH A 205 705 232 HOH HOH . H 7 HOH A 206 706 138 HOH HOH . H 7 HOH A 207 707 169 HOH HOH . H 7 HOH A 208 708 144 HOH HOH . H 7 HOH A 209 709 198 HOH HOH . H 7 HOH A 210 710 217 HOH HOH . H 7 HOH A 211 711 140 HOH HOH . H 7 HOH A 212 712 189 HOH HOH . H 7 HOH A 213 713 196 HOH HOH . H 7 HOH A 214 714 182 HOH HOH . H 7 HOH A 215 715 102 HOH HOH . H 7 HOH A 216 716 166 HOH HOH . H 7 HOH A 217 717 107 HOH HOH . H 7 HOH A 218 718 98 HOH HOH . H 7 HOH A 219 719 160 HOH HOH . H 7 HOH A 220 720 174 HOH HOH . H 7 HOH A 221 721 236 HOH HOH . H 7 HOH A 222 722 76 HOH HOH . H 7 HOH A 223 723 106 HOH HOH . H 7 HOH A 224 724 183 HOH HOH . H 7 HOH A 225 725 156 HOH HOH . H 7 HOH A 226 726 115 HOH HOH . H 7 HOH A 227 727 159 HOH HOH . H 7 HOH A 228 728 153 HOH HOH . H 7 HOH A 229 729 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 23.605 2.784 55.764 1 37.34 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 3 24.49 3.42 54.72 1 19.71 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 3 24.176 3.554 57.257 1 42.01 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 3 24.232 1.156 56.085 1 29.57 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #