data_5RC5
#
_model_server_result.job_id            iN982Qs4AUjU-NY0T1JVNA 
_model_server_result.datetime_utc      '2024-11-08 03:36:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5rc5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5RC5 
#
_exptl.entry_id    5RC5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.17 
_cell.angle_gamma         90 
_cell.entry_id            5RC5 
_cell.length_a            45.234 
_cell.length_b            73.008 
_cell.length_c            52.296 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RC5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc1 L O2 PG4 . A PG4 411 1_555 M NA NA . A NA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? 
metalc ? metalc2 L O4 PG4 . A PG4 411 1_555 M NA NA . A NA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.199 ? 
metalc ? metalc3 L O5 PG4 . A PG4 411 1_555 M NA NA . A NA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 89 n n 
S C1 DMS sing 90 n n 
S C2 DMS sing 91 n n 
C1 H11 DMS sing 92 n n 
C1 H12 DMS sing 93 n n 
C1 H13 DMS sing 94 n n 
C2 H21 DMS sing 95 n n 
C2 H22 DMS sing 96 n n 
C2 H23 DMS sing 97 n n 
#
_atom_sites.entry_id                     5RC5 
_atom_sites.fract_transf_matrix[1][1]    0.022107 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007685 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013697 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020244 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RBG A 1 401 401 RBG XXX . 
C 3 DMS A 1 402 501 DMS DMS . 
D 3 DMS A 1 403 601 DMS DMS . 
E 4 GOL A 1 404 701 GOL GOL . 
F 3 DMS A 1 405 801 DMS DMS . 
G 4 GOL A 1 406 901 GOL GOL . 
H 4 GOL A 1 407 401 GOL GOL . 
I 4 GOL A 1 408 402 GOL GOL . 
J 4 GOL A 1 409 403 GOL GOL . 
K 5 ACT A 1 410 405 ACT ACT . 
L 6 PG4 A 1 411 407 PG4 PG4 . 
M 7 NA A 1 412 408 NA NA . 
N 8 HOH A 1 501 84 HOH HOH . 
N 8 HOH A 2 502 227 HOH HOH . 
N 8 HOH A 3 503 228 HOH HOH . 
N 8 HOH A 4 504 225 HOH HOH . 
N 8 HOH A 5 505 161 HOH HOH . 
N 8 HOH A 6 506 187 HOH HOH . 
N 8 HOH A 7 507 133 HOH HOH . 
N 8 HOH A 8 508 74 HOH HOH . 
N 8 HOH A 9 509 167 HOH HOH . 
N 8 HOH A 10 510 142 HOH HOH . 
N 8 HOH A 11 511 40 HOH HOH . 
N 8 HOH A 12 512 211 HOH HOH . 
N 8 HOH A 13 513 239 HOH HOH . 
N 8 HOH A 14 514 200 HOH HOH . 
N 8 HOH A 15 515 168 HOH HOH . 
N 8 HOH A 16 516 35 HOH HOH . 
N 8 HOH A 17 517 57 HOH HOH . 
N 8 HOH A 18 518 12 HOH HOH . 
N 8 HOH A 19 519 162 HOH HOH . 
N 8 HOH A 20 520 194 HOH HOH . 
N 8 HOH A 21 521 54 HOH HOH . 
N 8 HOH A 22 522 15 HOH HOH . 
N 8 HOH A 23 523 45 HOH HOH . 
N 8 HOH A 24 524 205 HOH HOH . 
N 8 HOH A 25 525 203 HOH HOH . 
N 8 HOH A 26 526 173 HOH HOH . 
N 8 HOH A 27 527 21 HOH HOH . 
N 8 HOH A 28 528 230 HOH HOH . 
N 8 HOH A 29 529 72 HOH HOH . 
N 8 HOH A 30 530 23 HOH HOH . 
N 8 HOH A 31 531 24 HOH HOH . 
N 8 HOH A 32 532 19 HOH HOH . 
N 8 HOH A 33 533 217 HOH HOH . 
N 8 HOH A 34 534 192 HOH HOH . 
N 8 HOH A 35 535 188 HOH HOH . 
N 8 HOH A 36 536 71 HOH HOH . 
N 8 HOH A 37 537 68 HOH HOH . 
N 8 HOH A 38 538 2 HOH HOH . 
N 8 HOH A 39 539 149 HOH HOH . 
N 8 HOH A 40 540 44 HOH HOH . 
N 8 HOH A 41 541 134 HOH HOH . 
N 8 HOH A 42 542 154 HOH HOH . 
N 8 HOH A 43 543 231 HOH HOH . 
N 8 HOH A 44 544 18 HOH HOH . 
N 8 HOH A 45 545 222 HOH HOH . 
N 8 HOH A 46 546 221 HOH HOH . 
N 8 HOH A 47 547 17 HOH HOH . 
N 8 HOH A 48 548 38 HOH HOH . 
N 8 HOH A 49 549 32 HOH HOH . 
N 8 HOH A 50 550 22 HOH HOH . 
N 8 HOH A 51 551 3 HOH HOH . 
N 8 HOH A 52 552 70 HOH HOH . 
N 8 HOH A 53 553 184 HOH HOH . 
N 8 HOH A 54 554 30 HOH HOH . 
N 8 HOH A 55 555 210 HOH HOH . 
N 8 HOH A 56 556 52 HOH HOH . 
N 8 HOH A 57 557 41 HOH HOH . 
N 8 HOH A 58 558 81 HOH HOH . 
N 8 HOH A 59 559 20 HOH HOH . 
N 8 HOH A 60 560 7 HOH HOH . 
N 8 HOH A 61 561 190 HOH HOH . 
N 8 HOH A 62 562 141 HOH HOH . 
N 8 HOH A 63 563 148 HOH HOH . 
N 8 HOH A 64 564 48 HOH HOH . 
N 8 HOH A 65 565 90 HOH HOH . 
N 8 HOH A 66 566 137 HOH HOH . 
N 8 HOH A 67 567 47 HOH HOH . 
N 8 HOH A 68 568 11 HOH HOH . 
N 8 HOH A 69 569 138 HOH HOH . 
N 8 HOH A 70 570 189 HOH HOH . 
N 8 HOH A 71 571 169 HOH HOH . 
N 8 HOH A 72 572 193 HOH HOH . 
N 8 HOH A 73 573 139 HOH HOH . 
N 8 HOH A 74 574 6 HOH HOH . 
N 8 HOH A 75 575 145 HOH HOH . 
N 8 HOH A 76 576 46 HOH HOH . 
N 8 HOH A 77 577 51 HOH HOH . 
N 8 HOH A 78 578 13 HOH HOH . 
N 8 HOH A 79 579 29 HOH HOH . 
N 8 HOH A 80 580 26 HOH HOH . 
N 8 HOH A 81 581 91 HOH HOH . 
N 8 HOH A 82 582 143 HOH HOH . 
N 8 HOH A 83 583 43 HOH HOH . 
N 8 HOH A 84 584 33 HOH HOH . 
N 8 HOH A 85 585 166 HOH HOH . 
N 8 HOH A 86 586 156 HOH HOH . 
N 8 HOH A 87 587 244 HOH HOH . 
N 8 HOH A 88 588 37 HOH HOH . 
N 8 HOH A 89 589 14 HOH HOH . 
N 8 HOH A 90 590 171 HOH HOH . 
N 8 HOH A 91 591 62 HOH HOH . 
N 8 HOH A 92 592 16 HOH HOH . 
N 8 HOH A 93 593 88 HOH HOH . 
N 8 HOH A 94 594 196 HOH HOH . 
N 8 HOH A 95 595 86 HOH HOH . 
N 8 HOH A 96 596 10 HOH HOH . 
N 8 HOH A 97 597 176 HOH HOH . 
N 8 HOH A 98 598 89 HOH HOH . 
N 8 HOH A 99 599 140 HOH HOH . 
N 8 HOH A 100 600 198 HOH HOH . 
N 8 HOH A 101 601 146 HOH HOH . 
N 8 HOH A 102 602 177 HOH HOH . 
N 8 HOH A 103 603 240 HOH HOH . 
N 8 HOH A 104 604 209 HOH HOH . 
N 8 HOH A 105 605 195 HOH HOH . 
N 8 HOH A 106 606 42 HOH HOH . 
N 8 HOH A 107 607 246 HOH HOH . 
N 8 HOH A 108 608 56 HOH HOH . 
N 8 HOH A 109 609 219 HOH HOH . 
N 8 HOH A 110 610 50 HOH HOH . 
N 8 HOH A 111 611 66 HOH HOH . 
N 8 HOH A 112 612 4 HOH HOH . 
N 8 HOH A 113 613 216 HOH HOH . 
N 8 HOH A 114 614 87 HOH HOH . 
N 8 HOH A 115 615 175 HOH HOH . 
N 8 HOH A 116 616 83 HOH HOH . 
N 8 HOH A 117 617 34 HOH HOH . 
N 8 HOH A 118 618 223 HOH HOH . 
N 8 HOH A 119 619 185 HOH HOH . 
N 8 HOH A 120 620 78 HOH HOH . 
N 8 HOH A 121 621 58 HOH HOH . 
N 8 HOH A 122 622 80 HOH HOH . 
N 8 HOH A 123 623 155 HOH HOH . 
N 8 HOH A 124 624 183 HOH HOH . 
N 8 HOH A 125 625 60 HOH HOH . 
N 8 HOH A 126 626 77 HOH HOH . 
N 8 HOH A 127 627 197 HOH HOH . 
N 8 HOH A 128 628 67 HOH HOH . 
N 8 HOH A 129 629 144 HOH HOH . 
N 8 HOH A 130 630 159 HOH HOH . 
N 8 HOH A 131 631 25 HOH HOH . 
N 8 HOH A 132 632 160 HOH HOH . 
N 8 HOH A 133 633 55 HOH HOH . 
N 8 HOH A 134 634 28 HOH HOH . 
N 8 HOH A 135 635 31 HOH HOH . 
N 8 HOH A 136 636 65 HOH HOH . 
N 8 HOH A 137 637 238 HOH HOH . 
N 8 HOH A 138 638 75 HOH HOH . 
N 8 HOH A 139 639 218 HOH HOH . 
N 8 HOH A 140 640 39 HOH HOH . 
N 8 HOH A 141 641 199 HOH HOH . 
N 8 HOH A 142 642 245 HOH HOH . 
N 8 HOH A 143 643 61 HOH HOH . 
N 8 HOH A 144 644 79 HOH HOH . 
N 8 HOH A 145 645 69 HOH HOH . 
N 8 HOH A 146 646 157 HOH HOH . 
N 8 HOH A 147 647 59 HOH HOH . 
N 8 HOH A 148 648 186 HOH HOH . 
N 8 HOH A 149 649 135 HOH HOH . 
N 8 HOH A 150 650 191 HOH HOH . 
N 8 HOH A 151 651 233 HOH HOH . 
N 8 HOH A 152 652 147 HOH HOH . 
N 8 HOH A 153 653 49 HOH HOH . 
N 8 HOH A 154 654 82 HOH HOH . 
N 8 HOH A 155 655 181 HOH HOH . 
N 8 HOH A 156 656 224 HOH HOH . 
N 8 HOH A 157 657 236 HOH HOH . 
N 8 HOH A 158 658 237 HOH HOH . 
N 8 HOH A 159 659 136 HOH HOH . 
N 8 HOH A 160 660 76 HOH HOH . 
N 8 HOH A 161 661 153 HOH HOH . 
N 8 HOH A 162 662 208 HOH HOH . 
N 8 HOH A 163 663 207 HOH HOH . 
N 8 HOH A 164 664 151 HOH HOH . 
N 8 HOH A 165 665 214 HOH HOH . 
N 8 HOH A 166 666 170 HOH HOH . 
N 8 HOH A 167 667 215 HOH HOH . 
N 8 HOH A 168 668 241 HOH HOH . 
N 8 HOH A 169 669 158 HOH HOH . 
N 8 HOH A 170 670 73 HOH HOH . 
N 8 HOH A 171 671 174 HOH HOH . 
N 8 HOH A 172 672 180 HOH HOH . 
N 8 HOH A 173 673 179 HOH HOH . 
N 8 HOH A 174 674 178 HOH HOH . 
N 8 HOH A 175 675 201 HOH HOH . 
N 8 HOH A 176 676 164 HOH HOH . 
N 8 HOH A 177 677 163 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 3 16.937 4.174 63.664 1 38.34 ? S DMS 403 A 1 
HETATM 2 O O DMS . . . D 3 17.944 3.155 64.198 1 23.9 ? O DMS 403 A 1 
HETATM 3 C C1 DMS . . . D 3 17.793 5.183 62.477 1 37.91 ? C1 DMS 403 A 1 
HETATM 4 C C2 DMS . . . D 3 16.777 5.413 64.927 1 39.18 ? C2 DMS 403 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           4 
#