data_5RC6 # _model_server_result.job_id vA2F0gqILFDOx9k-Ow3diQ _model_server_result.datetime_utc '2024-11-28 13:16:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rc6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5RC6 # _exptl.entry_id 5RC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.12 _cell.angle_gamma 90 _cell.entry_id 5RC6 _cell.length_a 45.218 _cell.length_b 73.077 _cell.length_c 52.517 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 379 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.072 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 144 n n C1 C2 GOL sing 145 n n C1 H11 GOL sing 146 n n C1 H12 GOL sing 147 n n O1 HO1 GOL sing 148 n n C2 O2 GOL sing 149 n n C2 C3 GOL sing 150 n n C2 H2 GOL sing 151 n n O2 HO2 GOL sing 152 n n C3 O3 GOL sing 153 n n C3 H31 GOL sing 154 n n C3 H32 GOL sing 155 n n O3 HO3 GOL sing 156 n n # _atom_sites.entry_id 5RC6 _atom_sites.fract_transf_matrix[1][1] 0.022115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007665 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RBJ A 1 401 401 RBJ XXX . C 3 DMS A 1 402 501 DMS DMS . D 4 GOL A 1 403 601 GOL GOL . E 4 GOL A 1 404 401 GOL GOL . F 4 GOL A 1 405 402 GOL GOL . G 4 GOL A 1 406 403 GOL GOL . H 5 ACT A 1 407 405 ACT ACT . I 6 PG4 A 1 408 407 PG4 PG4 . J 7 HOH A 1 501 106 HOH HOH . J 7 HOH A 2 502 72 HOH HOH . J 7 HOH A 3 503 56 HOH HOH . J 7 HOH A 4 504 212 HOH HOH . J 7 HOH A 5 505 141 HOH HOH . J 7 HOH A 6 506 113 HOH HOH . J 7 HOH A 7 507 63 HOH HOH . J 7 HOH A 8 508 231 HOH HOH . J 7 HOH A 9 509 98 HOH HOH . J 7 HOH A 10 510 168 HOH HOH . J 7 HOH A 11 511 105 HOH HOH . J 7 HOH A 12 512 174 HOH HOH . J 7 HOH A 13 513 165 HOH HOH . J 7 HOH A 14 514 94 HOH HOH . J 7 HOH A 15 515 167 HOH HOH . J 7 HOH A 16 516 180 HOH HOH . J 7 HOH A 17 517 43 HOH HOH . J 7 HOH A 18 518 49 HOH HOH . J 7 HOH A 19 519 225 HOH HOH . J 7 HOH A 20 520 54 HOH HOH . J 7 HOH A 21 521 69 HOH HOH . J 7 HOH A 22 522 13 HOH HOH . J 7 HOH A 23 523 197 HOH HOH . J 7 HOH A 24 524 131 HOH HOH . J 7 HOH A 25 525 211 HOH HOH . J 7 HOH A 26 526 157 HOH HOH . J 7 HOH A 27 527 205 HOH HOH . J 7 HOH A 28 528 89 HOH HOH . J 7 HOH A 29 529 31 HOH HOH . J 7 HOH A 30 530 181 HOH HOH . J 7 HOH A 31 531 133 HOH HOH . J 7 HOH A 32 532 229 HOH HOH . J 7 HOH A 33 533 151 HOH HOH . J 7 HOH A 34 534 170 HOH HOH . J 7 HOH A 35 535 78 HOH HOH . J 7 HOH A 36 536 15 HOH HOH . J 7 HOH A 37 537 2 HOH HOH . J 7 HOH A 38 538 83 HOH HOH . J 7 HOH A 39 539 203 HOH HOH . J 7 HOH A 40 540 59 HOH HOH . J 7 HOH A 41 541 33 HOH HOH . J 7 HOH A 42 542 30 HOH HOH . J 7 HOH A 43 543 108 HOH HOH . J 7 HOH A 44 544 125 HOH HOH . J 7 HOH A 45 545 21 HOH HOH . J 7 HOH A 46 546 26 HOH HOH . J 7 HOH A 47 547 27 HOH HOH . J 7 HOH A 48 548 76 HOH HOH . J 7 HOH A 49 549 28 HOH HOH . J 7 HOH A 50 550 3 HOH HOH . J 7 HOH A 51 551 86 HOH HOH . J 7 HOH A 52 552 144 HOH HOH . J 7 HOH A 53 553 57 HOH HOH . J 7 HOH A 54 554 58 HOH HOH . J 7 HOH A 55 555 120 HOH HOH . J 7 HOH A 56 556 29 HOH HOH . J 7 HOH A 57 557 19 HOH HOH . J 7 HOH A 58 558 215 HOH HOH . J 7 HOH A 59 559 207 HOH HOH . J 7 HOH A 60 560 20 HOH HOH . J 7 HOH A 61 561 17 HOH HOH . J 7 HOH A 62 562 137 HOH HOH . J 7 HOH A 63 563 127 HOH HOH . J 7 HOH A 64 564 143 HOH HOH . J 7 HOH A 65 565 209 HOH HOH . J 7 HOH A 66 566 5 HOH HOH . J 7 HOH A 67 567 148 HOH HOH . J 7 HOH A 68 568 234 HOH HOH . J 7 HOH A 69 569 191 HOH HOH . J 7 HOH A 70 570 18 HOH HOH . J 7 HOH A 71 571 132 HOH HOH . J 7 HOH A 72 572 150 HOH HOH . J 7 HOH A 73 573 14 HOH HOH . J 7 HOH A 74 574 60 HOH HOH . J 7 HOH A 75 575 115 HOH HOH . J 7 HOH A 76 576 90 HOH HOH . J 7 HOH A 77 577 107 HOH HOH . J 7 HOH A 78 578 68 HOH HOH . J 7 HOH A 79 579 130 HOH HOH . J 7 HOH A 80 580 179 HOH HOH . J 7 HOH A 81 581 62 HOH HOH . J 7 HOH A 82 582 228 HOH HOH . J 7 HOH A 83 583 9 HOH HOH . J 7 HOH A 84 584 172 HOH HOH . J 7 HOH A 85 585 146 HOH HOH . J 7 HOH A 86 586 6 HOH HOH . J 7 HOH A 87 587 124 HOH HOH . J 7 HOH A 88 588 103 HOH HOH . J 7 HOH A 89 589 198 HOH HOH . J 7 HOH A 90 590 25 HOH HOH . J 7 HOH A 91 591 37 HOH HOH . J 7 HOH A 92 592 66 HOH HOH . J 7 HOH A 93 593 226 HOH HOH . J 7 HOH A 94 594 34 HOH HOH . J 7 HOH A 95 595 134 HOH HOH . J 7 HOH A 96 596 38 HOH HOH . J 7 HOH A 97 597 201 HOH HOH . J 7 HOH A 98 598 12 HOH HOH . J 7 HOH A 99 599 100 HOH HOH . J 7 HOH A 100 600 188 HOH HOH . J 7 HOH A 101 601 11 HOH HOH . J 7 HOH A 102 602 112 HOH HOH . J 7 HOH A 103 603 196 HOH HOH . J 7 HOH A 104 604 99 HOH HOH . J 7 HOH A 105 605 156 HOH HOH . J 7 HOH A 106 606 32 HOH HOH . J 7 HOH A 107 607 166 HOH HOH . J 7 HOH A 108 608 97 HOH HOH . J 7 HOH A 109 609 135 HOH HOH . J 7 HOH A 110 610 77 HOH HOH . J 7 HOH A 111 611 199 HOH HOH . J 7 HOH A 112 612 23 HOH HOH . J 7 HOH A 113 613 171 HOH HOH . J 7 HOH A 114 614 213 HOH HOH . J 7 HOH A 115 615 84 HOH HOH . J 7 HOH A 116 616 61 HOH HOH . J 7 HOH A 117 617 178 HOH HOH . J 7 HOH A 118 618 41 HOH HOH . J 7 HOH A 119 619 82 HOH HOH . J 7 HOH A 120 620 128 HOH HOH . J 7 HOH A 121 621 91 HOH HOH . J 7 HOH A 122 622 169 HOH HOH . J 7 HOH A 123 623 65 HOH HOH . J 7 HOH A 124 624 50 HOH HOH . J 7 HOH A 125 625 159 HOH HOH . J 7 HOH A 126 626 101 HOH HOH . J 7 HOH A 127 627 24 HOH HOH . J 7 HOH A 128 628 122 HOH HOH . J 7 HOH A 129 629 73 HOH HOH . J 7 HOH A 130 630 53 HOH HOH . J 7 HOH A 131 631 136 HOH HOH . J 7 HOH A 132 632 202 HOH HOH . J 7 HOH A 133 633 22 HOH HOH . J 7 HOH A 134 634 10 HOH HOH . J 7 HOH A 135 635 4 HOH HOH . J 7 HOH A 136 636 200 HOH HOH . J 7 HOH A 137 637 193 HOH HOH . J 7 HOH A 138 638 51 HOH HOH . J 7 HOH A 139 639 48 HOH HOH . J 7 HOH A 140 640 152 HOH HOH . J 7 HOH A 141 641 147 HOH HOH . J 7 HOH A 142 642 139 HOH HOH . J 7 HOH A 143 643 121 HOH HOH . J 7 HOH A 144 644 92 HOH HOH . J 7 HOH A 145 645 116 HOH HOH . J 7 HOH A 146 646 55 HOH HOH . J 7 HOH A 147 647 45 HOH HOH . J 7 HOH A 148 648 40 HOH HOH . J 7 HOH A 149 649 173 HOH HOH . J 7 HOH A 150 650 42 HOH HOH . J 7 HOH A 151 651 70 HOH HOH . J 7 HOH A 152 652 104 HOH HOH . J 7 HOH A 153 653 227 HOH HOH . J 7 HOH A 154 654 39 HOH HOH . J 7 HOH A 155 655 67 HOH HOH . J 7 HOH A 156 656 126 HOH HOH . J 7 HOH A 157 657 109 HOH HOH . J 7 HOH A 158 658 85 HOH HOH . J 7 HOH A 159 659 93 HOH HOH . J 7 HOH A 160 660 216 HOH HOH . J 7 HOH A 161 661 96 HOH HOH . J 7 HOH A 162 662 64 HOH HOH . J 7 HOH A 163 663 80 HOH HOH . J 7 HOH A 164 664 224 HOH HOH . J 7 HOH A 165 665 75 HOH HOH . J 7 HOH A 166 666 190 HOH HOH . J 7 HOH A 167 667 119 HOH HOH . J 7 HOH A 168 668 145 HOH HOH . J 7 HOH A 169 669 218 HOH HOH . J 7 HOH A 170 670 79 HOH HOH . J 7 HOH A 171 671 235 HOH HOH . J 7 HOH A 172 672 142 HOH HOH . J 7 HOH A 173 673 123 HOH HOH . J 7 HOH A 174 674 154 HOH HOH . J 7 HOH A 175 675 230 HOH HOH . J 7 HOH A 176 676 208 HOH HOH . J 7 HOH A 177 677 87 HOH HOH . J 7 HOH A 178 678 187 HOH HOH . J 7 HOH A 179 679 71 HOH HOH . J 7 HOH A 180 680 117 HOH HOH . J 7 HOH A 181 681 158 HOH HOH . J 7 HOH A 182 682 177 HOH HOH . J 7 HOH A 183 683 210 HOH HOH . J 7 HOH A 184 684 102 HOH HOH . J 7 HOH A 185 685 129 HOH HOH . J 7 HOH A 186 686 35 HOH HOH . J 7 HOH A 187 687 192 HOH HOH . J 7 HOH A 188 688 220 HOH HOH . J 7 HOH A 189 689 74 HOH HOH . J 7 HOH A 190 690 155 HOH HOH . J 7 HOH A 191 691 140 HOH HOH . J 7 HOH A 192 692 186 HOH HOH . J 7 HOH A 193 693 189 HOH HOH . J 7 HOH A 194 694 149 HOH HOH . J 7 HOH A 195 695 194 HOH HOH . J 7 HOH A 196 696 153 HOH HOH . J 7 HOH A 197 697 206 HOH HOH . J 7 HOH A 198 698 222 HOH HOH . J 7 HOH A 199 699 111 HOH HOH . J 7 HOH A 200 700 164 HOH HOH . J 7 HOH A 201 701 81 HOH HOH . J 7 HOH A 202 702 232 HOH HOH . J 7 HOH A 203 703 138 HOH HOH . J 7 HOH A 204 704 161 HOH HOH . J 7 HOH A 205 705 114 HOH HOH . J 7 HOH A 206 706 176 HOH HOH . J 7 HOH A 207 707 184 HOH HOH . J 7 HOH A 208 708 183 HOH HOH . J 7 HOH A 209 709 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 36.043 -3.415 38.212 0.73 20.16 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . E 4 37.101 -2.546 38.579 0.73 15.49 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . E 4 34.742 -2.681 37.945 0.73 21.06 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . E 4 34.891 -1.666 36.938 0.73 20.81 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . E 4 33.625 -3.65 37.618 0.73 25.58 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . E 4 33.77 -4.208 36.32 0.73 28.78 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 6 #