data_5RC7 # _model_server_result.job_id OBJPnRKS-thIQDs6ZBEj9A _model_server_result.datetime_utc '2024-11-08 11:53:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5RC7 # _exptl.entry_id 5RC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.02 _cell.angle_gamma 90 _cell.entry_id 5RC7 _cell.length_a 45.186 _cell.length_b 73.094 _cell.length_c 52.386 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 379 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.05 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 112 n n S C1 DMS sing 113 n n S C2 DMS sing 114 n n C1 H11 DMS sing 115 n n C1 H12 DMS sing 116 n n C1 H13 DMS sing 117 n n C2 H21 DMS sing 118 n n C2 H22 DMS sing 119 n n C2 H23 DMS sing 120 n n # _atom_sites.entry_id 5RC7 _atom_sites.fract_transf_matrix[1][1] 0.022131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007629 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020191 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AES A 1 401 401 AES XXX . C 3 DMS A 1 402 501 DMS DMS . D 3 DMS A 1 403 601 DMS DMS . E 4 GOL A 1 404 701 GOL GOL . F 4 GOL A 1 405 401 GOL GOL . G 4 GOL A 1 406 402 GOL GOL . H 5 ACT A 1 407 405 ACT ACT . I 6 PG4 A 1 408 407 PG4 PG4 . J 7 HOH A 1 501 112 HOH HOH . J 7 HOH A 2 502 238 HOH HOH . J 7 HOH A 3 503 249 HOH HOH . J 7 HOH A 4 504 232 HOH HOH . J 7 HOH A 5 505 261 HOH HOH . J 7 HOH A 6 506 242 HOH HOH . J 7 HOH A 7 507 139 HOH HOH . J 7 HOH A 8 508 205 HOH HOH . J 7 HOH A 9 509 160 HOH HOH . J 7 HOH A 10 510 180 HOH HOH . J 7 HOH A 11 511 49 HOH HOH . J 7 HOH A 12 512 58 HOH HOH . J 7 HOH A 13 513 236 HOH HOH . J 7 HOH A 14 514 220 HOH HOH . J 7 HOH A 15 515 233 HOH HOH . J 7 HOH A 16 516 204 HOH HOH . J 7 HOH A 17 517 189 HOH HOH . J 7 HOH A 18 518 156 HOH HOH . J 7 HOH A 19 519 30 HOH HOH . J 7 HOH A 20 520 230 HOH HOH . J 7 HOH A 21 521 126 HOH HOH . J 7 HOH A 22 522 92 HOH HOH . J 7 HOH A 23 523 72 HOH HOH . J 7 HOH A 24 524 125 HOH HOH . J 7 HOH A 25 525 136 HOH HOH . J 7 HOH A 26 526 6 HOH HOH . J 7 HOH A 27 527 104 HOH HOH . J 7 HOH A 28 528 96 HOH HOH . J 7 HOH A 29 529 174 HOH HOH . J 7 HOH A 30 530 212 HOH HOH . J 7 HOH A 31 531 89 HOH HOH . J 7 HOH A 32 532 14 HOH HOH . J 7 HOH A 33 533 48 HOH HOH . J 7 HOH A 34 534 16 HOH HOH . J 7 HOH A 35 535 200 HOH HOH . J 7 HOH A 36 536 18 HOH HOH . J 7 HOH A 37 537 5 HOH HOH . J 7 HOH A 38 538 41 HOH HOH . J 7 HOH A 39 539 158 HOH HOH . J 7 HOH A 40 540 138 HOH HOH . J 7 HOH A 41 541 251 HOH HOH . J 7 HOH A 42 542 28 HOH HOH . J 7 HOH A 43 543 150 HOH HOH . J 7 HOH A 44 544 60 HOH HOH . J 7 HOH A 45 545 22 HOH HOH . J 7 HOH A 46 546 201 HOH HOH . J 7 HOH A 47 547 107 HOH HOH . J 7 HOH A 48 548 40 HOH HOH . J 7 HOH A 49 549 121 HOH HOH . J 7 HOH A 50 550 20 HOH HOH . J 7 HOH A 51 551 213 HOH HOH . J 7 HOH A 52 552 168 HOH HOH . J 7 HOH A 53 553 36 HOH HOH . J 7 HOH A 54 554 83 HOH HOH . J 7 HOH A 55 555 144 HOH HOH . J 7 HOH A 56 556 70 HOH HOH . J 7 HOH A 57 557 34 HOH HOH . J 7 HOH A 58 558 226 HOH HOH . J 7 HOH A 59 559 29 HOH HOH . J 7 HOH A 60 560 27 HOH HOH . J 7 HOH A 61 561 3 HOH HOH . J 7 HOH A 62 562 2 HOH HOH . J 7 HOH A 63 563 11 HOH HOH . J 7 HOH A 64 564 185 HOH HOH . J 7 HOH A 65 565 128 HOH HOH . J 7 HOH A 66 566 216 HOH HOH . J 7 HOH A 67 567 38 HOH HOH . J 7 HOH A 68 568 115 HOH HOH . J 7 HOH A 69 569 194 HOH HOH . J 7 HOH A 70 570 223 HOH HOH . J 7 HOH A 71 571 26 HOH HOH . J 7 HOH A 72 572 42 HOH HOH . J 7 HOH A 73 573 17 HOH HOH . J 7 HOH A 74 574 155 HOH HOH . J 7 HOH A 75 575 13 HOH HOH . J 7 HOH A 76 576 245 HOH HOH . J 7 HOH A 77 577 102 HOH HOH . J 7 HOH A 78 578 113 HOH HOH . J 7 HOH A 79 579 8 HOH HOH . J 7 HOH A 80 580 23 HOH HOH . J 7 HOH A 81 581 103 HOH HOH . J 7 HOH A 82 582 131 HOH HOH . J 7 HOH A 83 583 177 HOH HOH . J 7 HOH A 84 584 35 HOH HOH . J 7 HOH A 85 585 39 HOH HOH . J 7 HOH A 86 586 157 HOH HOH . J 7 HOH A 87 587 76 HOH HOH . J 7 HOH A 88 588 110 HOH HOH . J 7 HOH A 89 589 9 HOH HOH . J 7 HOH A 90 590 21 HOH HOH . J 7 HOH A 91 591 167 HOH HOH . J 7 HOH A 92 592 32 HOH HOH . J 7 HOH A 93 593 188 HOH HOH . J 7 HOH A 94 594 10 HOH HOH . J 7 HOH A 95 595 164 HOH HOH . J 7 HOH A 96 596 172 HOH HOH . J 7 HOH A 97 597 181 HOH HOH . J 7 HOH A 98 598 63 HOH HOH . J 7 HOH A 99 599 66 HOH HOH . J 7 HOH A 100 600 117 HOH HOH . J 7 HOH A 101 601 142 HOH HOH . J 7 HOH A 102 602 82 HOH HOH . J 7 HOH A 103 603 147 HOH HOH . J 7 HOH A 104 604 19 HOH HOH . J 7 HOH A 105 605 161 HOH HOH . J 7 HOH A 106 606 198 HOH HOH . J 7 HOH A 107 607 166 HOH HOH . J 7 HOH A 108 608 154 HOH HOH . J 7 HOH A 109 609 246 HOH HOH . J 7 HOH A 110 610 91 HOH HOH . J 7 HOH A 111 611 79 HOH HOH . J 7 HOH A 112 612 119 HOH HOH . J 7 HOH A 113 613 15 HOH HOH . J 7 HOH A 114 614 130 HOH HOH . J 7 HOH A 115 615 99 HOH HOH . J 7 HOH A 116 616 250 HOH HOH . J 7 HOH A 117 617 135 HOH HOH . J 7 HOH A 118 618 12 HOH HOH . J 7 HOH A 119 619 31 HOH HOH . J 7 HOH A 120 620 7 HOH HOH . J 7 HOH A 121 621 255 HOH HOH . J 7 HOH A 122 622 262 HOH HOH . J 7 HOH A 123 623 120 HOH HOH . J 7 HOH A 124 624 151 HOH HOH . J 7 HOH A 125 625 73 HOH HOH . J 7 HOH A 126 626 93 HOH HOH . J 7 HOH A 127 627 51 HOH HOH . J 7 HOH A 128 628 228 HOH HOH . J 7 HOH A 129 629 171 HOH HOH . J 7 HOH A 130 630 148 HOH HOH . J 7 HOH A 131 631 182 HOH HOH . J 7 HOH A 132 632 199 HOH HOH . J 7 HOH A 133 633 56 HOH HOH . J 7 HOH A 134 634 46 HOH HOH . J 7 HOH A 135 635 196 HOH HOH . J 7 HOH A 136 636 169 HOH HOH . J 7 HOH A 137 637 229 HOH HOH . J 7 HOH A 138 638 52 HOH HOH . J 7 HOH A 139 639 74 HOH HOH . J 7 HOH A 140 640 141 HOH HOH . J 7 HOH A 141 641 95 HOH HOH . J 7 HOH A 142 642 221 HOH HOH . J 7 HOH A 143 643 159 HOH HOH . J 7 HOH A 144 644 109 HOH HOH . J 7 HOH A 145 645 222 HOH HOH . J 7 HOH A 146 646 190 HOH HOH . J 7 HOH A 147 647 97 HOH HOH . J 7 HOH A 148 648 106 HOH HOH . J 7 HOH A 149 649 224 HOH HOH . J 7 HOH A 150 650 244 HOH HOH . J 7 HOH A 151 651 37 HOH HOH . J 7 HOH A 152 652 202 HOH HOH . J 7 HOH A 153 653 4 HOH HOH . J 7 HOH A 154 654 54 HOH HOH . J 7 HOH A 155 655 75 HOH HOH . J 7 HOH A 156 656 132 HOH HOH . J 7 HOH A 157 657 203 HOH HOH . J 7 HOH A 158 658 55 HOH HOH . J 7 HOH A 159 659 240 HOH HOH . J 7 HOH A 160 660 165 HOH HOH . J 7 HOH A 161 661 149 HOH HOH . J 7 HOH A 162 662 152 HOH HOH . J 7 HOH A 163 663 25 HOH HOH . J 7 HOH A 164 664 247 HOH HOH . J 7 HOH A 165 665 43 HOH HOH . J 7 HOH A 166 666 257 HOH HOH . J 7 HOH A 167 667 68 HOH HOH . J 7 HOH A 168 668 122 HOH HOH . J 7 HOH A 169 669 227 HOH HOH . J 7 HOH A 170 670 44 HOH HOH . J 7 HOH A 171 671 111 HOH HOH . J 7 HOH A 172 672 24 HOH HOH . J 7 HOH A 173 673 71 HOH HOH . J 7 HOH A 174 674 235 HOH HOH . J 7 HOH A 175 675 84 HOH HOH . J 7 HOH A 176 676 64 HOH HOH . J 7 HOH A 177 677 100 HOH HOH . J 7 HOH A 178 678 256 HOH HOH . J 7 HOH A 179 679 94 HOH HOH . J 7 HOH A 180 680 53 HOH HOH . J 7 HOH A 181 681 133 HOH HOH . J 7 HOH A 182 682 59 HOH HOH . J 7 HOH A 183 683 86 HOH HOH . J 7 HOH A 184 684 85 HOH HOH . J 7 HOH A 185 685 108 HOH HOH . J 7 HOH A 186 686 67 HOH HOH . J 7 HOH A 187 687 78 HOH HOH . J 7 HOH A 188 688 175 HOH HOH . J 7 HOH A 189 689 208 HOH HOH . J 7 HOH A 190 690 77 HOH HOH . J 7 HOH A 191 691 118 HOH HOH . J 7 HOH A 192 692 218 HOH HOH . J 7 HOH A 193 693 173 HOH HOH . J 7 HOH A 194 694 225 HOH HOH . J 7 HOH A 195 695 260 HOH HOH . J 7 HOH A 196 696 123 HOH HOH . J 7 HOH A 197 697 50 HOH HOH . J 7 HOH A 198 698 195 HOH HOH . J 7 HOH A 199 699 146 HOH HOH . J 7 HOH A 200 700 170 HOH HOH . J 7 HOH A 201 701 114 HOH HOH . J 7 HOH A 202 702 137 HOH HOH . J 7 HOH A 203 703 101 HOH HOH . J 7 HOH A 204 704 61 HOH HOH . J 7 HOH A 205 705 239 HOH HOH . J 7 HOH A 206 706 263 HOH HOH . J 7 HOH A 207 707 134 HOH HOH . J 7 HOH A 208 708 217 HOH HOH . J 7 HOH A 209 709 252 HOH HOH . J 7 HOH A 210 710 258 HOH HOH . J 7 HOH A 211 711 192 HOH HOH . J 7 HOH A 212 712 124 HOH HOH . J 7 HOH A 213 713 65 HOH HOH . J 7 HOH A 214 714 162 HOH HOH . J 7 HOH A 215 715 186 HOH HOH . J 7 HOH A 216 716 98 HOH HOH . J 7 HOH A 217 717 184 HOH HOH . J 7 HOH A 218 718 176 HOH HOH . J 7 HOH A 219 719 210 HOH HOH . J 7 HOH A 220 720 187 HOH HOH . J 7 HOH A 221 721 259 HOH HOH . J 7 HOH A 222 722 153 HOH HOH . J 7 HOH A 223 723 127 HOH HOH . J 7 HOH A 224 724 178 HOH HOH . J 7 HOH A 225 725 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 17.338 4.158 63.525 1 42.88 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 3 18.332 3.127 64.055 1 30.47 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 3 17.243 5.472 64.708 1 45.34 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 3 18.193 5.054 62.233 1 42.48 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #