data_5RC8
#
_model_server_result.job_id            ctk2muMlRumyQ5nSlmc6MA 
_model_server_result.datetime_utc      '2024-11-08 08:49:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5rc8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":406}' 
#
_entry.id    5RC8 
#
_exptl.entry_id    5RC8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.1 
_cell.angle_gamma         90 
_cell.entry_id            5RC8 
_cell.length_a            45.195 
_cell.length_b            72.971 
_cell.length_c            52.423 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RC8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc1 I O1 PG4 . A PG4 408 1_555 J NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? 
metalc ? metalc2 I O2 PG4 . A PG4 408 1_555 J NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.008 ? 
metalc ? metalc3 I O5 PG4 . A PG4 408 1_555 J NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 144 n n 
C1 C2 GOL sing 145 n n 
C1 H11 GOL sing 146 n n 
C1 H12 GOL sing 147 n n 
O1 HO1 GOL sing 148 n n 
C2 O2 GOL sing 149 n n 
C2 C3 GOL sing 150 n n 
C2 H2 GOL sing 151 n n 
O2 HO2 GOL sing 152 n n 
C3 O3 GOL sing 153 n n 
C3 H31 GOL sing 154 n n 
C3 H32 GOL sing 155 n n 
O3 HO3 GOL sing 156 n n 
#
_atom_sites.entry_id                     5RC8 
_atom_sites.fract_transf_matrix[1][1]    0.022126 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007664 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013704 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020187 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RCV A 1 401 401 RCV XXX . 
C 3 DMS A 1 402 501 DMS DMS . 
D 4 GOL A 1 403 601 GOL GOL . 
E 4 GOL A 1 404 701 GOL GOL . 
F 4 GOL A 1 405 402 GOL GOL . 
G 4 GOL A 1 406 403 GOL GOL . 
H 5 ACT A 1 407 405 ACT ACT . 
I 6 PG4 A 1 408 407 PG4 PG4 . 
J 7 NA A 1 409 408 NA NA . 
K 8 HOH A 1 501 105 HOH HOH . 
K 8 HOH A 2 502 155 HOH HOH . 
K 8 HOH A 3 503 240 HOH HOH . 
K 8 HOH A 4 504 82 HOH HOH . 
K 8 HOH A 5 505 256 HOH HOH . 
K 8 HOH A 6 506 79 HOH HOH . 
K 8 HOH A 7 507 36 HOH HOH . 
K 8 HOH A 8 508 241 HOH HOH . 
K 8 HOH A 9 509 250 HOH HOH . 
K 8 HOH A 10 510 166 HOH HOH . 
K 8 HOH A 11 511 204 HOH HOH . 
K 8 HOH A 12 512 115 HOH HOH . 
K 8 HOH A 13 513 213 HOH HOH . 
K 8 HOH A 14 514 47 HOH HOH . 
K 8 HOH A 15 515 231 HOH HOH . 
K 8 HOH A 16 516 235 HOH HOH . 
K 8 HOH A 17 517 165 HOH HOH . 
K 8 HOH A 18 518 50 HOH HOH . 
K 8 HOH A 19 519 129 HOH HOH . 
K 8 HOH A 20 520 127 HOH HOH . 
K 8 HOH A 21 521 197 HOH HOH . 
K 8 HOH A 22 522 72 HOH HOH . 
K 8 HOH A 23 523 196 HOH HOH . 
K 8 HOH A 24 524 184 HOH HOH . 
K 8 HOH A 25 525 140 HOH HOH . 
K 8 HOH A 26 526 81 HOH HOH . 
K 8 HOH A 27 527 226 HOH HOH . 
K 8 HOH A 28 528 146 HOH HOH . 
K 8 HOH A 29 529 63 HOH HOH . 
K 8 HOH A 30 530 13 HOH HOH . 
K 8 HOH A 31 531 179 HOH HOH . 
K 8 HOH A 32 532 54 HOH HOH . 
K 8 HOH A 33 533 46 HOH HOH . 
K 8 HOH A 34 534 186 HOH HOH . 
K 8 HOH A 35 535 26 HOH HOH . 
K 8 HOH A 36 536 157 HOH HOH . 
K 8 HOH A 37 537 21 HOH HOH . 
K 8 HOH A 38 538 20 HOH HOH . 
K 8 HOH A 39 539 27 HOH HOH . 
K 8 HOH A 40 540 76 HOH HOH . 
K 8 HOH A 41 541 149 HOH HOH . 
K 8 HOH A 42 542 3 HOH HOH . 
K 8 HOH A 43 543 174 HOH HOH . 
K 8 HOH A 44 544 25 HOH HOH . 
K 8 HOH A 45 545 147 HOH HOH . 
K 8 HOH A 46 546 22 HOH HOH . 
K 8 HOH A 47 547 183 HOH HOH . 
K 8 HOH A 48 548 220 HOH HOH . 
K 8 HOH A 49 549 99 HOH HOH . 
K 8 HOH A 50 550 230 HOH HOH . 
K 8 HOH A 51 551 66 HOH HOH . 
K 8 HOH A 52 552 171 HOH HOH . 
K 8 HOH A 53 553 205 HOH HOH . 
K 8 HOH A 54 554 34 HOH HOH . 
K 8 HOH A 55 555 23 HOH HOH . 
K 8 HOH A 56 556 259 HOH HOH . 
K 8 HOH A 57 557 10 HOH HOH . 
K 8 HOH A 58 558 39 HOH HOH . 
K 8 HOH A 59 559 113 HOH HOH . 
K 8 HOH A 60 560 4 HOH HOH . 
K 8 HOH A 61 561 192 HOH HOH . 
K 8 HOH A 62 562 43 HOH HOH . 
K 8 HOH A 63 563 70 HOH HOH . 
K 8 HOH A 64 564 215 HOH HOH . 
K 8 HOH A 65 565 40 HOH HOH . 
K 8 HOH A 66 566 44 HOH HOH . 
K 8 HOH A 67 567 244 HOH HOH . 
K 8 HOH A 68 568 38 HOH HOH . 
K 8 HOH A 69 569 117 HOH HOH . 
K 8 HOH A 70 570 11 HOH HOH . 
K 8 HOH A 71 571 83 HOH HOH . 
K 8 HOH A 72 572 176 HOH HOH . 
K 8 HOH A 73 573 190 HOH HOH . 
K 8 HOH A 74 574 16 HOH HOH . 
K 8 HOH A 75 575 194 HOH HOH . 
K 8 HOH A 76 576 80 HOH HOH . 
K 8 HOH A 77 577 18 HOH HOH . 
K 8 HOH A 78 578 108 HOH HOH . 
K 8 HOH A 79 579 6 HOH HOH . 
K 8 HOH A 80 580 100 HOH HOH . 
K 8 HOH A 81 581 137 HOH HOH . 
K 8 HOH A 82 582 53 HOH HOH . 
K 8 HOH A 83 583 31 HOH HOH . 
K 8 HOH A 84 584 237 HOH HOH . 
K 8 HOH A 85 585 189 HOH HOH . 
K 8 HOH A 86 586 130 HOH HOH . 
K 8 HOH A 87 587 42 HOH HOH . 
K 8 HOH A 88 588 169 HOH HOH . 
K 8 HOH A 89 589 177 HOH HOH . 
K 8 HOH A 90 590 159 HOH HOH . 
K 8 HOH A 91 591 131 HOH HOH . 
K 8 HOH A 92 592 247 HOH HOH . 
K 8 HOH A 93 593 57 HOH HOH . 
K 8 HOH A 94 594 124 HOH HOH . 
K 8 HOH A 95 595 5 HOH HOH . 
K 8 HOH A 96 596 28 HOH HOH . 
K 8 HOH A 97 597 178 HOH HOH . 
K 8 HOH A 98 598 65 HOH HOH . 
K 8 HOH A 99 599 160 HOH HOH . 
K 8 HOH A 100 600 94 HOH HOH . 
K 8 HOH A 101 601 123 HOH HOH . 
K 8 HOH A 102 602 125 HOH HOH . 
K 8 HOH A 103 603 33 HOH HOH . 
K 8 HOH A 104 604 145 HOH HOH . 
K 8 HOH A 105 605 91 HOH HOH . 
K 8 HOH A 106 606 243 HOH HOH . 
K 8 HOH A 107 607 191 HOH HOH . 
K 8 HOH A 108 608 14 HOH HOH . 
K 8 HOH A 109 609 116 HOH HOH . 
K 8 HOH A 110 610 193 HOH HOH . 
K 8 HOH A 111 611 93 HOH HOH . 
K 8 HOH A 112 612 41 HOH HOH . 
K 8 HOH A 113 613 58 HOH HOH . 
K 8 HOH A 114 614 202 HOH HOH . 
K 8 HOH A 115 615 8 HOH HOH . 
K 8 HOH A 116 616 136 HOH HOH . 
K 8 HOH A 117 617 98 HOH HOH . 
K 8 HOH A 118 618 195 HOH HOH . 
K 8 HOH A 119 619 17 HOH HOH . 
K 8 HOH A 120 620 201 HOH HOH . 
K 8 HOH A 121 621 92 HOH HOH . 
K 8 HOH A 122 622 245 HOH HOH . 
K 8 HOH A 123 623 175 HOH HOH . 
K 8 HOH A 124 624 209 HOH HOH . 
K 8 HOH A 125 625 135 HOH HOH . 
K 8 HOH A 126 626 187 HOH HOH . 
K 8 HOH A 127 627 9 HOH HOH . 
K 8 HOH A 128 628 110 HOH HOH . 
K 8 HOH A 129 629 96 HOH HOH . 
K 8 HOH A 130 630 64 HOH HOH . 
K 8 HOH A 131 631 48 HOH HOH . 
K 8 HOH A 132 632 260 HOH HOH . 
K 8 HOH A 133 633 51 HOH HOH . 
K 8 HOH A 134 634 221 HOH HOH . 
K 8 HOH A 135 635 104 HOH HOH . 
K 8 HOH A 136 636 85 HOH HOH . 
K 8 HOH A 137 637 45 HOH HOH . 
K 8 HOH A 138 638 206 HOH HOH . 
K 8 HOH A 139 639 161 HOH HOH . 
K 8 HOH A 140 640 162 HOH HOH . 
K 8 HOH A 141 641 15 HOH HOH . 
K 8 HOH A 142 642 199 HOH HOH . 
K 8 HOH A 143 643 233 HOH HOH . 
K 8 HOH A 144 644 168 HOH HOH . 
K 8 HOH A 145 645 109 HOH HOH . 
K 8 HOH A 146 646 141 HOH HOH . 
K 8 HOH A 147 647 67 HOH HOH . 
K 8 HOH A 148 648 151 HOH HOH . 
K 8 HOH A 149 649 134 HOH HOH . 
K 8 HOH A 150 650 180 HOH HOH . 
K 8 HOH A 151 651 219 HOH HOH . 
K 8 HOH A 152 652 86 HOH HOH . 
K 8 HOH A 153 653 29 HOH HOH . 
K 8 HOH A 154 654 19 HOH HOH . 
K 8 HOH A 155 655 84 HOH HOH . 
K 8 HOH A 156 656 32 HOH HOH . 
K 8 HOH A 157 657 52 HOH HOH . 
K 8 HOH A 158 658 87 HOH HOH . 
K 8 HOH A 159 659 55 HOH HOH . 
K 8 HOH A 160 660 112 HOH HOH . 
K 8 HOH A 161 661 249 HOH HOH . 
K 8 HOH A 162 662 106 HOH HOH . 
K 8 HOH A 163 663 49 HOH HOH . 
K 8 HOH A 164 664 74 HOH HOH . 
K 8 HOH A 165 665 78 HOH HOH . 
K 8 HOH A 166 666 73 HOH HOH . 
K 8 HOH A 167 667 97 HOH HOH . 
K 8 HOH A 168 668 122 HOH HOH . 
K 8 HOH A 169 669 246 HOH HOH . 
K 8 HOH A 170 670 257 HOH HOH . 
K 8 HOH A 171 671 37 HOH HOH . 
K 8 HOH A 172 672 119 HOH HOH . 
K 8 HOH A 173 673 232 HOH HOH . 
K 8 HOH A 174 674 61 HOH HOH . 
K 8 HOH A 175 675 121 HOH HOH . 
K 8 HOH A 176 676 90 HOH HOH . 
K 8 HOH A 177 677 222 HOH HOH . 
K 8 HOH A 178 678 88 HOH HOH . 
K 8 HOH A 179 679 150 HOH HOH . 
K 8 HOH A 180 680 253 HOH HOH . 
K 8 HOH A 181 681 148 HOH HOH . 
K 8 HOH A 182 682 2 HOH HOH . 
K 8 HOH A 183 683 75 HOH HOH . 
K 8 HOH A 184 684 77 HOH HOH . 
K 8 HOH A 185 685 138 HOH HOH . 
K 8 HOH A 186 686 154 HOH HOH . 
K 8 HOH A 187 687 120 HOH HOH . 
K 8 HOH A 188 688 223 HOH HOH . 
K 8 HOH A 189 689 228 HOH HOH . 
K 8 HOH A 190 690 144 HOH HOH . 
K 8 HOH A 191 691 56 HOH HOH . 
K 8 HOH A 192 692 101 HOH HOH . 
K 8 HOH A 193 693 133 HOH HOH . 
K 8 HOH A 194 694 69 HOH HOH . 
K 8 HOH A 195 695 254 HOH HOH . 
K 8 HOH A 196 696 242 HOH HOH . 
K 8 HOH A 197 697 188 HOH HOH . 
K 8 HOH A 198 698 258 HOH HOH . 
K 8 HOH A 199 699 139 HOH HOH . 
K 8 HOH A 200 700 200 HOH HOH . 
K 8 HOH A 201 701 224 HOH HOH . 
K 8 HOH A 202 702 181 HOH HOH . 
K 8 HOH A 203 703 142 HOH HOH . 
K 8 HOH A 204 704 167 HOH HOH . 
K 8 HOH A 205 705 164 HOH HOH . 
K 8 HOH A 206 706 118 HOH HOH . 
K 8 HOH A 207 707 214 HOH HOH . 
K 8 HOH A 208 708 210 HOH HOH . 
K 8 HOH A 209 709 68 HOH HOH . 
K 8 HOH A 210 710 261 HOH HOH . 
K 8 HOH A 211 711 143 HOH HOH . 
K 8 HOH A 212 712 111 HOH HOH . 
K 8 HOH A 213 713 156 HOH HOH . 
K 8 HOH A 214 714 182 HOH HOH . 
K 8 HOH A 215 715 173 HOH HOH . 
K 8 HOH A 216 716 126 HOH HOH . 
K 8 HOH A 217 717 163 HOH HOH . 
K 8 HOH A 218 718 211 HOH HOH . 
K 8 HOH A 219 719 153 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 14.143 13.904 32.412 0.72 35.77 ? C1 GOL 406 A 1 
HETATM 2 O O1 GOL . . . G 4 14.141 12.91 31.399 0.72 37.04 ? O1 GOL 406 A 1 
HETATM 3 C C2 GOL . . . G 4 14.838 13.392 33.644 0.72 32.22 ? C2 GOL 406 A 1 
HETATM 4 O O2 GOL . . . G 4 14.172 13.908 34.798 0.72 35.22 ? O2 GOL 406 A 1 
HETATM 5 C C3 GOL . . . G 4 16.332 13.656 33.611 0.72 26.79 ? C3 GOL 406 A 1 
HETATM 6 O O3 GOL . . . G 4 16.938 13.438 34.863 0.72 20.14 ? O3 GOL 406 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           6 
#