data_5RCE # _model_server_result.job_id oKKlFNqVcX5mEwV9qONU6g _model_server_result.datetime_utc '2025-01-10 10:52:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rce # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 5RCE # _exptl.entry_id 5RCE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.6 _cell.angle_gamma 90 _cell.entry_id 5RCE _cell.length_a 45.277 _cell.length_b 72.544 _cell.length_c 52.348 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RCE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? C ? ? C ? ? ? ? ? ? ? 2.116 ? disulf ? disulf4 A SG CYS 344 A CYS 255 1_555 A SG CYS 379 A CYS 290 1_555 ? D ? ? D ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 265 n n O1 HO1 PG4 sing 266 n n C1 C2 PG4 sing 267 n n C1 H11 PG4 sing 268 n n C1 H12 PG4 sing 269 n n C2 O2 PG4 sing 270 n n C2 H21 PG4 sing 271 n n C2 H22 PG4 sing 272 n n O2 C3 PG4 sing 273 n n C3 C4 PG4 sing 274 n n C3 H31 PG4 sing 275 n n C3 H32 PG4 sing 276 n n C4 O3 PG4 sing 277 n n C4 H41 PG4 sing 278 n n C4 H42 PG4 sing 279 n n O3 C5 PG4 sing 280 n n C5 C6 PG4 sing 281 n n C5 H51 PG4 sing 282 n n C5 H52 PG4 sing 283 n n C6 O4 PG4 sing 284 n n C6 H61 PG4 sing 285 n n C6 H62 PG4 sing 286 n n O4 C7 PG4 sing 287 n n C7 C8 PG4 sing 288 n n C7 H71 PG4 sing 289 n n C7 H72 PG4 sing 290 n n C8 O5 PG4 sing 291 n n C8 H81 PG4 sing 292 n n C8 H82 PG4 sing 293 n n O5 HO5 PG4 sing 294 n n # _atom_sites.entry_id 5RCE _atom_sites.fract_transf_matrix[1][1] 0.022086 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007865 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RE4 A 1 401 401 RE4 XXX . C 2 RE4 A 1 402 501 RE4 XXX . D 2 RE4 A 1 403 601 RE4 XXX . E 3 DMS A 1 404 701 DMS DMS . F 4 GOL A 1 405 401 GOL GOL . G 4 GOL A 1 406 402 GOL GOL . H 5 ACT A 1 407 405 ACT ACT . I 6 PG4 A 1 408 407 PG4 PG4 . J 7 HOH A 1 501 78 HOH HOH . J 7 HOH A 2 502 106 HOH HOH . J 7 HOH A 3 503 187 HOH HOH . J 7 HOH A 4 504 82 HOH HOH . J 7 HOH A 5 505 237 HOH HOH . J 7 HOH A 6 506 249 HOH HOH . J 7 HOH A 7 507 243 HOH HOH . J 7 HOH A 8 508 168 HOH HOH . J 7 HOH A 9 509 159 HOH HOH . J 7 HOH A 10 510 126 HOH HOH . J 7 HOH A 11 511 104 HOH HOH . J 7 HOH A 12 512 183 HOH HOH . J 7 HOH A 13 513 232 HOH HOH . J 7 HOH A 14 514 86 HOH HOH . J 7 HOH A 15 515 22 HOH HOH . J 7 HOH A 16 516 91 HOH HOH . J 7 HOH A 17 517 146 HOH HOH . J 7 HOH A 18 518 53 HOH HOH . J 7 HOH A 19 519 95 HOH HOH . J 7 HOH A 20 520 118 HOH HOH . J 7 HOH A 21 521 151 HOH HOH . J 7 HOH A 22 522 224 HOH HOH . J 7 HOH A 23 523 246 HOH HOH . J 7 HOH A 24 524 56 HOH HOH . J 7 HOH A 25 525 34 HOH HOH . J 7 HOH A 26 526 147 HOH HOH . J 7 HOH A 27 527 87 HOH HOH . J 7 HOH A 28 528 12 HOH HOH . J 7 HOH A 29 529 37 HOH HOH . J 7 HOH A 30 530 10 HOH HOH . J 7 HOH A 31 531 214 HOH HOH . J 7 HOH A 32 532 26 HOH HOH . J 7 HOH A 33 533 33 HOH HOH . J 7 HOH A 34 534 23 HOH HOH . J 7 HOH A 35 535 75 HOH HOH . J 7 HOH A 36 536 175 HOH HOH . J 7 HOH A 37 537 62 HOH HOH . J 7 HOH A 38 538 24 HOH HOH . J 7 HOH A 39 539 29 HOH HOH . J 7 HOH A 40 540 69 HOH HOH . J 7 HOH A 41 541 18 HOH HOH . J 7 HOH A 42 542 189 HOH HOH . J 7 HOH A 43 543 50 HOH HOH . J 7 HOH A 44 544 15 HOH HOH . J 7 HOH A 45 545 66 HOH HOH . J 7 HOH A 46 546 174 HOH HOH . J 7 HOH A 47 547 3 HOH HOH . J 7 HOH A 48 548 36 HOH HOH . J 7 HOH A 49 549 158 HOH HOH . J 7 HOH A 50 550 130 HOH HOH . J 7 HOH A 51 551 79 HOH HOH . J 7 HOH A 52 552 102 HOH HOH . J 7 HOH A 53 553 25 HOH HOH . J 7 HOH A 54 554 190 HOH HOH . J 7 HOH A 55 555 195 HOH HOH . J 7 HOH A 56 556 192 HOH HOH . J 7 HOH A 57 557 164 HOH HOH . J 7 HOH A 58 558 211 HOH HOH . J 7 HOH A 59 559 185 HOH HOH . J 7 HOH A 60 560 57 HOH HOH . J 7 HOH A 61 561 221 HOH HOH . J 7 HOH A 62 562 2 HOH HOH . J 7 HOH A 63 563 44 HOH HOH . J 7 HOH A 64 564 71 HOH HOH . J 7 HOH A 65 565 35 HOH HOH . J 7 HOH A 66 566 242 HOH HOH . J 7 HOH A 67 567 43 HOH HOH . J 7 HOH A 68 568 61 HOH HOH . J 7 HOH A 69 569 162 HOH HOH . J 7 HOH A 70 570 136 HOH HOH . J 7 HOH A 71 571 73 HOH HOH . J 7 HOH A 72 572 16 HOH HOH . J 7 HOH A 73 573 51 HOH HOH . J 7 HOH A 74 574 14 HOH HOH . J 7 HOH A 75 575 46 HOH HOH . J 7 HOH A 76 576 8 HOH HOH . J 7 HOH A 77 577 77 HOH HOH . J 7 HOH A 78 578 84 HOH HOH . J 7 HOH A 79 579 90 HOH HOH . J 7 HOH A 80 580 182 HOH HOH . J 7 HOH A 81 581 150 HOH HOH . J 7 HOH A 82 582 122 HOH HOH . J 7 HOH A 83 583 178 HOH HOH . J 7 HOH A 84 584 80 HOH HOH . J 7 HOH A 85 585 11 HOH HOH . J 7 HOH A 86 586 100 HOH HOH . J 7 HOH A 87 587 129 HOH HOH . J 7 HOH A 88 588 197 HOH HOH . J 7 HOH A 89 589 85 HOH HOH . J 7 HOH A 90 590 93 HOH HOH . J 7 HOH A 91 591 148 HOH HOH . J 7 HOH A 92 592 6 HOH HOH . J 7 HOH A 93 593 9 HOH HOH . J 7 HOH A 94 594 206 HOH HOH . J 7 HOH A 95 595 119 HOH HOH . J 7 HOH A 96 596 167 HOH HOH . J 7 HOH A 97 597 48 HOH HOH . J 7 HOH A 98 598 140 HOH HOH . J 7 HOH A 99 599 125 HOH HOH . J 7 HOH A 100 600 229 HOH HOH . J 7 HOH A 101 601 105 HOH HOH . J 7 HOH A 102 602 19 HOH HOH . J 7 HOH A 103 603 143 HOH HOH . J 7 HOH A 104 604 153 HOH HOH . J 7 HOH A 105 605 172 HOH HOH . J 7 HOH A 106 606 4 HOH HOH . J 7 HOH A 107 607 160 HOH HOH . J 7 HOH A 108 608 120 HOH HOH . J 7 HOH A 109 609 28 HOH HOH . J 7 HOH A 110 610 141 HOH HOH . J 7 HOH A 111 611 55 HOH HOH . J 7 HOH A 112 612 198 HOH HOH . J 7 HOH A 113 613 7 HOH HOH . J 7 HOH A 114 614 204 HOH HOH . J 7 HOH A 115 615 41 HOH HOH . J 7 HOH A 116 616 47 HOH HOH . J 7 HOH A 117 617 115 HOH HOH . J 7 HOH A 118 618 60 HOH HOH . J 7 HOH A 119 619 13 HOH HOH . J 7 HOH A 120 620 134 HOH HOH . J 7 HOH A 121 621 103 HOH HOH . J 7 HOH A 122 622 154 HOH HOH . J 7 HOH A 123 623 97 HOH HOH . J 7 HOH A 124 624 108 HOH HOH . J 7 HOH A 125 625 20 HOH HOH . J 7 HOH A 126 626 245 HOH HOH . J 7 HOH A 127 627 40 HOH HOH . J 7 HOH A 128 628 236 HOH HOH . J 7 HOH A 129 629 199 HOH HOH . J 7 HOH A 130 630 194 HOH HOH . J 7 HOH A 131 631 72 HOH HOH . J 7 HOH A 132 632 5 HOH HOH . J 7 HOH A 133 633 152 HOH HOH . J 7 HOH A 134 634 17 HOH HOH . J 7 HOH A 135 635 226 HOH HOH . J 7 HOH A 136 636 161 HOH HOH . J 7 HOH A 137 637 63 HOH HOH . J 7 HOH A 138 638 31 HOH HOH . J 7 HOH A 139 639 38 HOH HOH . J 7 HOH A 140 640 219 HOH HOH . J 7 HOH A 141 641 101 HOH HOH . J 7 HOH A 142 642 230 HOH HOH . J 7 HOH A 143 643 144 HOH HOH . J 7 HOH A 144 644 116 HOH HOH . J 7 HOH A 145 645 239 HOH HOH . J 7 HOH A 146 646 218 HOH HOH . J 7 HOH A 147 647 30 HOH HOH . J 7 HOH A 148 648 139 HOH HOH . J 7 HOH A 149 649 117 HOH HOH . J 7 HOH A 150 650 121 HOH HOH . J 7 HOH A 151 651 127 HOH HOH . J 7 HOH A 152 652 45 HOH HOH . J 7 HOH A 153 653 166 HOH HOH . J 7 HOH A 154 654 54 HOH HOH . J 7 HOH A 155 655 220 HOH HOH . J 7 HOH A 156 656 32 HOH HOH . J 7 HOH A 157 657 83 HOH HOH . J 7 HOH A 158 658 203 HOH HOH . J 7 HOH A 159 659 248 HOH HOH . J 7 HOH A 160 660 68 HOH HOH . J 7 HOH A 161 661 21 HOH HOH . J 7 HOH A 162 662 215 HOH HOH . J 7 HOH A 163 663 176 HOH HOH . J 7 HOH A 164 664 133 HOH HOH . J 7 HOH A 165 665 181 HOH HOH . J 7 HOH A 166 666 252 HOH HOH . J 7 HOH A 167 667 42 HOH HOH . J 7 HOH A 168 668 88 HOH HOH . J 7 HOH A 169 669 98 HOH HOH . J 7 HOH A 170 670 81 HOH HOH . J 7 HOH A 171 671 188 HOH HOH . J 7 HOH A 172 672 205 HOH HOH . J 7 HOH A 173 673 201 HOH HOH . J 7 HOH A 174 674 244 HOH HOH . J 7 HOH A 175 675 110 HOH HOH . J 7 HOH A 176 676 155 HOH HOH . J 7 HOH A 177 677 65 HOH HOH . J 7 HOH A 178 678 128 HOH HOH . J 7 HOH A 179 679 186 HOH HOH . J 7 HOH A 180 680 94 HOH HOH . J 7 HOH A 181 681 39 HOH HOH . J 7 HOH A 182 682 59 HOH HOH . J 7 HOH A 183 683 123 HOH HOH . J 7 HOH A 184 684 64 HOH HOH . J 7 HOH A 185 685 131 HOH HOH . J 7 HOH A 186 686 132 HOH HOH . J 7 HOH A 187 687 107 HOH HOH . J 7 HOH A 188 688 191 HOH HOH . J 7 HOH A 189 689 184 HOH HOH . J 7 HOH A 190 690 145 HOH HOH . J 7 HOH A 191 691 217 HOH HOH . J 7 HOH A 192 692 149 HOH HOH . J 7 HOH A 193 693 222 HOH HOH . J 7 HOH A 194 694 135 HOH HOH . J 7 HOH A 195 695 109 HOH HOH . J 7 HOH A 196 696 99 HOH HOH . J 7 HOH A 197 697 177 HOH HOH . J 7 HOH A 198 698 111 HOH HOH . J 7 HOH A 199 699 74 HOH HOH . J 7 HOH A 200 700 49 HOH HOH . J 7 HOH A 201 701 210 HOH HOH . J 7 HOH A 202 702 240 HOH HOH . J 7 HOH A 203 703 223 HOH HOH . J 7 HOH A 204 704 96 HOH HOH . J 7 HOH A 205 705 156 HOH HOH . J 7 HOH A 206 706 157 HOH HOH . J 7 HOH A 207 707 142 HOH HOH . J 7 HOH A 208 708 137 HOH HOH . J 7 HOH A 209 709 163 HOH HOH . J 7 HOH A 210 710 202 HOH HOH . J 7 HOH A 211 711 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . A . I 6 19.688 5.152 52.346 0.25 37.42 ? O1 PG4 408 A 1 HETATM 2 O O1 PG4 . B . I 6 19.688 5.151 52.346 0.25 37.38 ? O1 PG4 408 A 1 HETATM 3 C C1 PG4 . A . I 6 20.186 3.826 52.343 0.25 35.54 ? C1 PG4 408 A 1 HETATM 4 C C1 PG4 . B . I 6 20.186 3.826 52.342 0.25 35.5 ? C1 PG4 408 A 1 HETATM 5 C C2 PG4 . A . I 6 20.346 3.278 50.96 0.25 36.34 ? C2 PG4 408 A 1 HETATM 6 C C2 PG4 . B . I 6 20.347 3.278 50.959 0.25 36.3 ? C2 PG4 408 A 1 HETATM 7 O O2 PG4 . A . I 6 20.028 1.889 50.943 0.25 36.22 ? O2 PG4 408 A 1 HETATM 8 O O2 PG4 . B . I 6 20.031 1.889 50.942 0.25 36.18 ? O2 PG4 408 A 1 HETATM 9 C C3 PG4 . A . I 6 19.456 1.474 49.708 0.25 33.21 ? C3 PG4 408 A 1 HETATM 10 C C3 PG4 . B . I 6 19.456 1.474 49.708 0.25 33.16 ? C3 PG4 408 A 1 HETATM 11 C C4 PG4 . A . I 6 18.001 1.827 49.681 0.25 34.13 ? C4 PG4 408 A 1 HETATM 12 C C4 PG4 . B . I 6 18.002 1.83 49.682 0.25 34.09 ? C4 PG4 408 A 1 HETATM 13 O O3 PG4 . A . I 6 17.311 0.911 48.838 0.25 35.4 ? O3 PG4 408 A 1 HETATM 14 O O3 PG4 . B . I 6 17.309 0.911 48.844 0.25 35.36 ? O3 PG4 408 A 1 HETATM 15 C C5 PG4 . A . I 6 15.919 0.83 49.114 0.25 35.61 ? C5 PG4 408 A 1 HETATM 16 C C5 PG4 . B . I 6 15.916 0.836 49.122 0.25 35.61 ? C5 PG4 408 A 1 HETATM 17 C C6 PG4 . A . I 6 15.238 2.06 48.609 0.25 35.33 ? C6 PG4 408 A 1 HETATM 18 C C6 PG4 . B . I 6 15.239 2.069 48.619 0.25 35.31 ? C6 PG4 408 A 1 HETATM 19 O O4 PG4 . A . I 6 13.995 2.23 49.277 0.25 36.04 ? O4 PG4 408 A 1 HETATM 20 O O4 PG4 . B . I 6 13.987 2.23 49.269 0.25 36.03 ? O4 PG4 408 A 1 HETATM 21 C C7 PG4 . A . I 6 13.439 3.528 49.103 0.25 34.87 ? C7 PG4 408 A 1 HETATM 22 C C7 PG4 . B . I 6 13.432 3.53 49.104 0.25 34.86 ? C7 PG4 408 A 1 HETATM 23 C C8 PG4 . A . I 6 13.575 4.308 50.37 0.25 35.16 ? C8 PG4 408 A 1 HETATM 24 C C8 PG4 . B . I 6 13.577 4.304 50.374 0.25 35.16 ? C8 PG4 408 A 1 HETATM 25 O O5 PG4 . A . I 6 14.917 4.68 50.623 0.25 33.64 ? O5 PG4 408 A 1 HETATM 26 O O5 PG4 . B . I 6 14.922 4.668 50.624 0.25 33.66 ? O5 PG4 408 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 471 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 26 #