data_5RGH # _model_server_result.job_id B2vgHK738kBxwJr9uDkh8w _model_server_result.datetime_utc '2024-11-21 11:23:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rgh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5RGH # _exptl.entry_id 5RGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.99 _cell.angle_gamma 90 _cell.entry_id 5RGH _cell.length_a 113.045 _cell.length_b 52.891 _cell.length_c 44.402 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5RGH _atom_sites.fract_transf_matrix[1][1] 0.008846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00204 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1002 DMS DMS . C 2 DMS A 1 402 1003 DMS DMS . D 2 DMS A 1 403 1004 DMS DMS . E 3 U0M A 1 404 1101 U0M LIG . F 2 DMS A 1 405 1201 DMS DMS . G 4 HOH A 1 501 239 HOH HOH . G 4 HOH A 2 502 332 HOH HOH . G 4 HOH A 3 503 317 HOH HOH . G 4 HOH A 4 504 87 HOH HOH . G 4 HOH A 5 505 334 HOH HOH . G 4 HOH A 6 506 282 HOH HOH . G 4 HOH A 7 507 56 HOH HOH . G 4 HOH A 8 508 66 HOH HOH . G 4 HOH A 9 509 85 HOH HOH . G 4 HOH A 10 510 221 HOH HOH . G 4 HOH A 11 511 246 HOH HOH . G 4 HOH A 12 512 146 HOH HOH . G 4 HOH A 13 513 227 HOH HOH . G 4 HOH A 14 514 77 HOH HOH . G 4 HOH A 15 515 30 HOH HOH . G 4 HOH A 16 516 118 HOH HOH . G 4 HOH A 17 517 271 HOH HOH . G 4 HOH A 18 518 237 HOH HOH . G 4 HOH A 19 519 249 HOH HOH . G 4 HOH A 20 520 34 HOH HOH . G 4 HOH A 21 521 191 HOH HOH . G 4 HOH A 22 522 55 HOH HOH . G 4 HOH A 23 523 82 HOH HOH . G 4 HOH A 24 524 310 HOH HOH . G 4 HOH A 25 525 148 HOH HOH . G 4 HOH A 26 526 93 HOH HOH . G 4 HOH A 27 527 29 HOH HOH . G 4 HOH A 28 528 97 HOH HOH . G 4 HOH A 29 529 134 HOH HOH . G 4 HOH A 30 530 330 HOH HOH . G 4 HOH A 31 531 228 HOH HOH . G 4 HOH A 32 532 42 HOH HOH . G 4 HOH A 33 533 155 HOH HOH . G 4 HOH A 34 534 103 HOH HOH . G 4 HOH A 35 535 126 HOH HOH . G 4 HOH A 36 536 170 HOH HOH . G 4 HOH A 37 537 110 HOH HOH . G 4 HOH A 38 538 105 HOH HOH . G 4 HOH A 39 539 248 HOH HOH . G 4 HOH A 40 540 5 HOH HOH . G 4 HOH A 41 541 302 HOH HOH . G 4 HOH A 42 542 48 HOH HOH . G 4 HOH A 43 543 104 HOH HOH . G 4 HOH A 44 544 35 HOH HOH . G 4 HOH A 45 545 53 HOH HOH . G 4 HOH A 46 546 216 HOH HOH . G 4 HOH A 47 547 167 HOH HOH . G 4 HOH A 48 548 117 HOH HOH . G 4 HOH A 49 549 325 HOH HOH . G 4 HOH A 50 550 63 HOH HOH . G 4 HOH A 51 551 162 HOH HOH . G 4 HOH A 52 552 149 HOH HOH . G 4 HOH A 53 553 169 HOH HOH . G 4 HOH A 54 554 102 HOH HOH . G 4 HOH A 55 555 86 HOH HOH . G 4 HOH A 56 556 25 HOH HOH . G 4 HOH A 57 557 222 HOH HOH . G 4 HOH A 58 558 45 HOH HOH . G 4 HOH A 59 559 99 HOH HOH . G 4 HOH A 60 560 159 HOH HOH . G 4 HOH A 61 561 288 HOH HOH . G 4 HOH A 62 562 10 HOH HOH . G 4 HOH A 63 563 114 HOH HOH . G 4 HOH A 64 564 168 HOH HOH . G 4 HOH A 65 565 156 HOH HOH . G 4 HOH A 66 566 285 HOH HOH . G 4 HOH A 67 567 9 HOH HOH . G 4 HOH A 68 568 198 HOH HOH . G 4 HOH A 69 569 21 HOH HOH . G 4 HOH A 70 570 44 HOH HOH . G 4 HOH A 71 571 185 HOH HOH . G 4 HOH A 72 572 223 HOH HOH . G 4 HOH A 73 573 210 HOH HOH . G 4 HOH A 74 574 20 HOH HOH . G 4 HOH A 75 575 1 HOH HOH . G 4 HOH A 76 576 128 HOH HOH . G 4 HOH A 77 577 279 HOH HOH . G 4 HOH A 78 578 259 HOH HOH . G 4 HOH A 79 579 319 HOH HOH . G 4 HOH A 80 580 24 HOH HOH . G 4 HOH A 81 581 115 HOH HOH . G 4 HOH A 82 582 31 HOH HOH . G 4 HOH A 83 583 284 HOH HOH . G 4 HOH A 84 584 73 HOH HOH . G 4 HOH A 85 585 111 HOH HOH . G 4 HOH A 86 586 89 HOH HOH . G 4 HOH A 87 587 65 HOH HOH . G 4 HOH A 88 588 151 HOH HOH . G 4 HOH A 89 589 67 HOH HOH . G 4 HOH A 90 590 183 HOH HOH . G 4 HOH A 91 591 208 HOH HOH . G 4 HOH A 92 592 250 HOH HOH . G 4 HOH A 93 593 40 HOH HOH . G 4 HOH A 94 594 340 HOH HOH . G 4 HOH A 95 595 96 HOH HOH . G 4 HOH A 96 596 2 HOH HOH . G 4 HOH A 97 597 129 HOH HOH . G 4 HOH A 98 598 12 HOH HOH . G 4 HOH A 99 599 69 HOH HOH . G 4 HOH A 100 600 3 HOH HOH . G 4 HOH A 101 601 138 HOH HOH . G 4 HOH A 102 602 336 HOH HOH . G 4 HOH A 103 603 94 HOH HOH . G 4 HOH A 104 604 92 HOH HOH . G 4 HOH A 105 605 243 HOH HOH . G 4 HOH A 106 606 244 HOH HOH . G 4 HOH A 107 607 60 HOH HOH . G 4 HOH A 108 608 245 HOH HOH . G 4 HOH A 109 609 79 HOH HOH . G 4 HOH A 110 610 33 HOH HOH . G 4 HOH A 111 611 68 HOH HOH . G 4 HOH A 112 612 27 HOH HOH . G 4 HOH A 113 613 58 HOH HOH . G 4 HOH A 114 614 268 HOH HOH . G 4 HOH A 115 615 294 HOH HOH . G 4 HOH A 116 616 157 HOH HOH . G 4 HOH A 117 617 277 HOH HOH . G 4 HOH A 118 618 165 HOH HOH . G 4 HOH A 119 619 312 HOH HOH . G 4 HOH A 120 620 14 HOH HOH . G 4 HOH A 121 621 186 HOH HOH . G 4 HOH A 122 622 178 HOH HOH . G 4 HOH A 123 623 6 HOH HOH . G 4 HOH A 124 624 292 HOH HOH . G 4 HOH A 125 625 38 HOH HOH . G 4 HOH A 126 626 80 HOH HOH . G 4 HOH A 127 627 62 HOH HOH . G 4 HOH A 128 628 141 HOH HOH . G 4 HOH A 129 629 172 HOH HOH . G 4 HOH A 130 630 15 HOH HOH . G 4 HOH A 131 631 338 HOH HOH . G 4 HOH A 132 632 333 HOH HOH . G 4 HOH A 133 633 140 HOH HOH . G 4 HOH A 134 634 225 HOH HOH . G 4 HOH A 135 635 7 HOH HOH . G 4 HOH A 136 636 121 HOH HOH . G 4 HOH A 137 637 267 HOH HOH . G 4 HOH A 138 638 224 HOH HOH . G 4 HOH A 139 639 335 HOH HOH . G 4 HOH A 140 640 11 HOH HOH . G 4 HOH A 141 641 75 HOH HOH . G 4 HOH A 142 642 19 HOH HOH . G 4 HOH A 143 643 4 HOH HOH . G 4 HOH A 144 644 83 HOH HOH . G 4 HOH A 145 645 72 HOH HOH . G 4 HOH A 146 646 18 HOH HOH . G 4 HOH A 147 647 76 HOH HOH . G 4 HOH A 148 648 57 HOH HOH . G 4 HOH A 149 649 26 HOH HOH . G 4 HOH A 150 650 177 HOH HOH . G 4 HOH A 151 651 39 HOH HOH . G 4 HOH A 152 652 8 HOH HOH . G 4 HOH A 153 653 17 HOH HOH . G 4 HOH A 154 654 189 HOH HOH . G 4 HOH A 155 655 43 HOH HOH . G 4 HOH A 156 656 84 HOH HOH . G 4 HOH A 157 657 130 HOH HOH . G 4 HOH A 158 658 101 HOH HOH . G 4 HOH A 159 659 175 HOH HOH . G 4 HOH A 160 660 145 HOH HOH . G 4 HOH A 161 661 59 HOH HOH . G 4 HOH A 162 662 123 HOH HOH . G 4 HOH A 163 663 219 HOH HOH . G 4 HOH A 164 664 133 HOH HOH . G 4 HOH A 165 665 37 HOH HOH . G 4 HOH A 166 666 241 HOH HOH . G 4 HOH A 167 667 318 HOH HOH . G 4 HOH A 168 668 28 HOH HOH . G 4 HOH A 169 669 226 HOH HOH . G 4 HOH A 170 670 107 HOH HOH . G 4 HOH A 171 671 242 HOH HOH . G 4 HOH A 172 672 91 HOH HOH . G 4 HOH A 173 673 127 HOH HOH . G 4 HOH A 174 674 54 HOH HOH . G 4 HOH A 175 675 64 HOH HOH . G 4 HOH A 176 676 144 HOH HOH . G 4 HOH A 177 677 174 HOH HOH . G 4 HOH A 178 678 78 HOH HOH . G 4 HOH A 179 679 32 HOH HOH . G 4 HOH A 180 680 173 HOH HOH . G 4 HOH A 181 681 297 HOH HOH . G 4 HOH A 182 682 150 HOH HOH . G 4 HOH A 183 683 13 HOH HOH . G 4 HOH A 184 684 337 HOH HOH . G 4 HOH A 185 685 323 HOH HOH . G 4 HOH A 186 686 160 HOH HOH . G 4 HOH A 187 687 46 HOH HOH . G 4 HOH A 188 688 116 HOH HOH . G 4 HOH A 189 689 280 HOH HOH . G 4 HOH A 190 690 266 HOH HOH . G 4 HOH A 191 691 261 HOH HOH . G 4 HOH A 192 692 100 HOH HOH . G 4 HOH A 193 693 200 HOH HOH . G 4 HOH A 194 694 251 HOH HOH . G 4 HOH A 195 695 176 HOH HOH . G 4 HOH A 196 696 262 HOH HOH . G 4 HOH A 197 697 220 HOH HOH . G 4 HOH A 198 698 327 HOH HOH . G 4 HOH A 199 699 257 HOH HOH . G 4 HOH A 200 700 61 HOH HOH . G 4 HOH A 201 701 88 HOH HOH . G 4 HOH A 202 702 81 HOH HOH . G 4 HOH A 203 703 163 HOH HOH . G 4 HOH A 204 704 211 HOH HOH . G 4 HOH A 205 705 71 HOH HOH . G 4 HOH A 206 706 193 HOH HOH . G 4 HOH A 207 707 52 HOH HOH . G 4 HOH A 208 708 51 HOH HOH . G 4 HOH A 209 709 22 HOH HOH . G 4 HOH A 210 710 195 HOH HOH . G 4 HOH A 211 711 23 HOH HOH . G 4 HOH A 212 712 269 HOH HOH . G 4 HOH A 213 713 119 HOH HOH . G 4 HOH A 214 714 16 HOH HOH . G 4 HOH A 215 715 161 HOH HOH . G 4 HOH A 216 716 329 HOH HOH . G 4 HOH A 217 717 47 HOH HOH . G 4 HOH A 218 718 212 HOH HOH . G 4 HOH A 219 719 124 HOH HOH . G 4 HOH A 220 720 181 HOH HOH . G 4 HOH A 221 721 180 HOH HOH . G 4 HOH A 222 722 247 HOH HOH . G 4 HOH A 223 723 296 HOH HOH . G 4 HOH A 224 724 213 HOH HOH . G 4 HOH A 225 725 272 HOH HOH . G 4 HOH A 226 726 301 HOH HOH . G 4 HOH A 227 727 125 HOH HOH . G 4 HOH A 228 728 217 HOH HOH . G 4 HOH A 229 729 108 HOH HOH . G 4 HOH A 230 730 50 HOH HOH . G 4 HOH A 231 731 231 HOH HOH . G 4 HOH A 232 732 276 HOH HOH . G 4 HOH A 233 733 321 HOH HOH . G 4 HOH A 234 734 289 HOH HOH . G 4 HOH A 235 735 147 HOH HOH . G 4 HOH A 236 736 309 HOH HOH . G 4 HOH A 237 737 240 HOH HOH . G 4 HOH A 238 738 135 HOH HOH . G 4 HOH A 239 739 298 HOH HOH . G 4 HOH A 240 740 139 HOH HOH . G 4 HOH A 241 741 303 HOH HOH . G 4 HOH A 242 742 232 HOH HOH . G 4 HOH A 243 743 209 HOH HOH . G 4 HOH A 244 744 273 HOH HOH . G 4 HOH A 245 745 275 HOH HOH . G 4 HOH A 246 746 287 HOH HOH . G 4 HOH A 247 747 214 HOH HOH . G 4 HOH A 248 748 187 HOH HOH . G 4 HOH A 249 749 264 HOH HOH . G 4 HOH A 250 750 202 HOH HOH . G 4 HOH A 251 751 196 HOH HOH . G 4 HOH A 252 752 322 HOH HOH . G 4 HOH A 253 753 238 HOH HOH . G 4 HOH A 254 754 283 HOH HOH . G 4 HOH A 255 755 218 HOH HOH . G 4 HOH A 256 756 229 HOH HOH . G 4 HOH A 257 757 136 HOH HOH . G 4 HOH A 258 758 305 HOH HOH . G 4 HOH A 259 759 236 HOH HOH . G 4 HOH A 260 760 265 HOH HOH . G 4 HOH A 261 761 158 HOH HOH . G 4 HOH A 262 762 278 HOH HOH . G 4 HOH A 263 763 291 HOH HOH . G 4 HOH A 264 764 74 HOH HOH . G 4 HOH A 265 765 120 HOH HOH . G 4 HOH A 266 766 143 HOH HOH . G 4 HOH A 267 767 253 HOH HOH . G 4 HOH A 268 768 142 HOH HOH . G 4 HOH A 269 769 281 HOH HOH . G 4 HOH A 270 770 260 HOH HOH . G 4 HOH A 271 771 166 HOH HOH . G 4 HOH A 272 772 179 HOH HOH . G 4 HOH A 273 773 324 HOH HOH . G 4 HOH A 274 774 234 HOH HOH . G 4 HOH A 275 775 307 HOH HOH . G 4 HOH A 276 776 201 HOH HOH . G 4 HOH A 277 777 152 HOH HOH . G 4 HOH A 278 778 194 HOH HOH . G 4 HOH A 279 779 106 HOH HOH . G 4 HOH A 280 780 256 HOH HOH . G 4 HOH A 281 781 308 HOH HOH . G 4 HOH A 282 782 263 HOH HOH . G 4 HOH A 283 783 192 HOH HOH . G 4 HOH A 284 784 328 HOH HOH . G 4 HOH A 285 785 204 HOH HOH . G 4 HOH A 286 786 315 HOH HOH . G 4 HOH A 287 787 171 HOH HOH . G 4 HOH A 288 788 90 HOH HOH . G 4 HOH A 289 789 341 HOH HOH . G 4 HOH A 290 790 122 HOH HOH . G 4 HOH A 291 791 300 HOH HOH . G 4 HOH A 292 792 339 HOH HOH . G 4 HOH A 293 793 306 HOH HOH . G 4 HOH A 294 794 199 HOH HOH . G 4 HOH A 295 795 153 HOH HOH . G 4 HOH A 296 796 255 HOH HOH . G 4 HOH A 297 797 286 HOH HOH . G 4 HOH A 298 798 293 HOH HOH . G 4 HOH A 299 799 49 HOH HOH . G 4 HOH A 300 800 207 HOH HOH . G 4 HOH A 301 801 320 HOH HOH . G 4 HOH A 302 802 254 HOH HOH . G 4 HOH A 303 803 70 HOH HOH . G 4 HOH A 304 804 235 HOH HOH . G 4 HOH A 305 805 304 HOH HOH . G 4 HOH A 306 806 313 HOH HOH . G 4 HOH A 307 807 112 HOH HOH . G 4 HOH A 308 808 131 HOH HOH . G 4 HOH A 309 809 41 HOH HOH . G 4 HOH A 310 810 137 HOH HOH . G 4 HOH A 311 811 233 HOH HOH . G 4 HOH A 312 812 230 HOH HOH . G 4 HOH A 313 813 98 HOH HOH . G 4 HOH A 314 814 331 HOH HOH . G 4 HOH A 315 815 314 HOH HOH . G 4 HOH A 316 816 252 HOH HOH . G 4 HOH A 317 817 311 HOH HOH . G 4 HOH A 318 818 113 HOH HOH . G 4 HOH A 319 819 182 HOH HOH . G 4 HOH A 320 820 206 HOH HOH . G 4 HOH A 321 821 274 HOH HOH . G 4 HOH A 322 822 205 HOH HOH . G 4 HOH A 323 823 326 HOH HOH . G 4 HOH A 324 824 203 HOH HOH . G 4 HOH A 325 825 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 7.07 -28.078 21.372 1 24.87 ? S DMS 401 A 1 HETATM 2 O O DMS . . . B 2 7.759 -27.149 22.269 1 23.34 ? O DMS 401 A 1 HETATM 3 C C1 DMS . . . B 2 5.787 -28.811 22.353 1 23.23 ? C1 DMS 401 A 1 HETATM 4 C C2 DMS . . . B 2 6.06 -27.116 20.303 1 24.14 ? C2 DMS 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #