data_5RGU # _model_server_result.job_id mpBn1pZCoxBpHQTkDS9o9g _model_server_result.datetime_utc '2025-04-17 21:36:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rgu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5RGU # _exptl.entry_id 5RGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.297 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-{[(2R)-4-oxoazetidin-2-yl]oxy}phenyl)-2-(pyrimidin-5-yl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.85 _cell.angle_gamma 90 _cell.entry_id 5RGU _cell.length_a 112.358 _cell.length_b 52.888 _cell.length_c 44.751 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H14 N4 O3' _chem_comp.formula_weight 298.297 _chem_comp.id UGD _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-{[(2R)-4-oxoazetidin-2-yl]oxy}phenyl)-2-(pyrimidin-5-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C4 UGD doub 367 n y N1 C5 UGD sing 368 n y C4 N UGD sing 369 n y C5 C2 UGD doub 370 n y N C3 UGD doub 371 n y C2 C3 UGD sing 372 n y C2 C1 UGD sing 373 n n C1 C UGD sing 374 n n O C UGD doub 375 n n C N2 UGD sing 376 n n N2 C6 UGD sing 377 n n C6 C7 UGD doub 378 n y C6 C14 UGD sing 379 n y N3 C11 UGD sing 380 n n N3 C13 UGD sing 381 n n C7 C8 UGD sing 382 n y C14 C10 UGD doub 383 n y O2 C13 UGD doub 384 n n C11 O1 UGD sing 385 n n C11 C12 UGD sing 386 n n C13 C12 UGD sing 387 n n C8 C9 UGD doub 388 n y C10 C9 UGD sing 389 n y C10 O1 UGD sing 390 n n N3 H1 UGD sing 391 n n C4 H2 UGD sing 392 n n C5 H3 UGD sing 393 n n C7 H4 UGD sing 394 n n C8 H5 UGD sing 395 n n C12 H6 UGD sing 396 n n C12 H7 UGD sing 397 n n C11 H8 UGD sing 398 n n C9 H9 UGD sing 399 n n C14 H10 UGD sing 400 n n N2 H11 UGD sing 401 n n C1 H12 UGD sing 402 n n C1 H13 UGD sing 403 n n C3 H14 UGD sing 404 n n # _atom_sites.entry_id 5RGU _atom_sites.fract_transf_matrix[1][1] 0.0089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UGD A 1 1001 1001 UGD LIG . C 3 DMS A 1 1002 1002 DMS DMS . D 3 DMS A 1 1003 1003 DMS DMS . E 3 DMS A 1 1004 1004 DMS DMS . F 3 DMS A 1 1005 1006 DMS DMS . G 4 HOH A 1 1101 142 HOH HOH . G 4 HOH A 2 1102 77 HOH HOH . G 4 HOH A 3 1103 105 HOH HOH . G 4 HOH A 4 1104 1 HOH HOH . G 4 HOH A 5 1105 57 HOH HOH . G 4 HOH A 6 1106 30 HOH HOH . G 4 HOH A 7 1107 35 HOH HOH . G 4 HOH A 8 1108 104 HOH HOH . G 4 HOH A 9 1109 152 HOH HOH . G 4 HOH A 10 1110 158 HOH HOH . G 4 HOH A 11 1111 9 HOH HOH . G 4 HOH A 12 1112 31 HOH HOH . G 4 HOH A 13 1113 29 HOH HOH . G 4 HOH A 14 1114 61 HOH HOH . G 4 HOH A 15 1115 181 HOH HOH . G 4 HOH A 16 1116 49 HOH HOH . G 4 HOH A 17 1117 65 HOH HOH . G 4 HOH A 18 1118 51 HOH HOH . G 4 HOH A 19 1119 33 HOH HOH . G 4 HOH A 20 1120 82 HOH HOH . G 4 HOH A 21 1121 160 HOH HOH . G 4 HOH A 22 1122 148 HOH HOH . G 4 HOH A 23 1123 42 HOH HOH . G 4 HOH A 24 1124 25 HOH HOH . G 4 HOH A 25 1125 85 HOH HOH . G 4 HOH A 26 1126 106 HOH HOH . G 4 HOH A 27 1127 130 HOH HOH . G 4 HOH A 28 1128 87 HOH HOH . G 4 HOH A 29 1129 71 HOH HOH . G 4 HOH A 30 1130 7 HOH HOH . G 4 HOH A 31 1131 81 HOH HOH . G 4 HOH A 32 1132 3 HOH HOH . G 4 HOH A 33 1133 24 HOH HOH . G 4 HOH A 34 1134 11 HOH HOH . G 4 HOH A 35 1135 70 HOH HOH . G 4 HOH A 36 1136 192 HOH HOH . G 4 HOH A 37 1137 6 HOH HOH . G 4 HOH A 38 1138 74 HOH HOH . G 4 HOH A 39 1139 159 HOH HOH . G 4 HOH A 40 1140 54 HOH HOH . G 4 HOH A 41 1141 88 HOH HOH . G 4 HOH A 42 1142 5 HOH HOH . G 4 HOH A 43 1143 53 HOH HOH . G 4 HOH A 44 1144 4 HOH HOH . G 4 HOH A 45 1145 36 HOH HOH . G 4 HOH A 46 1146 48 HOH HOH . G 4 HOH A 47 1147 22 HOH HOH . G 4 HOH A 48 1148 50 HOH HOH . G 4 HOH A 49 1149 157 HOH HOH . G 4 HOH A 50 1150 66 HOH HOH . G 4 HOH A 51 1151 23 HOH HOH . G 4 HOH A 52 1152 43 HOH HOH . G 4 HOH A 53 1153 56 HOH HOH . G 4 HOH A 54 1154 63 HOH HOH . G 4 HOH A 55 1155 45 HOH HOH . G 4 HOH A 56 1156 73 HOH HOH . G 4 HOH A 57 1157 69 HOH HOH . G 4 HOH A 58 1158 173 HOH HOH . G 4 HOH A 59 1159 28 HOH HOH . G 4 HOH A 60 1160 102 HOH HOH . G 4 HOH A 61 1161 52 HOH HOH . G 4 HOH A 62 1162 55 HOH HOH . G 4 HOH A 63 1163 19 HOH HOH . G 4 HOH A 64 1164 111 HOH HOH . G 4 HOH A 65 1165 60 HOH HOH . G 4 HOH A 66 1166 194 HOH HOH . G 4 HOH A 67 1167 10 HOH HOH . G 4 HOH A 68 1168 126 HOH HOH . G 4 HOH A 69 1169 180 HOH HOH . G 4 HOH A 70 1170 129 HOH HOH . G 4 HOH A 71 1171 41 HOH HOH . G 4 HOH A 72 1172 197 HOH HOH . G 4 HOH A 73 1173 162 HOH HOH . G 4 HOH A 74 1174 109 HOH HOH . G 4 HOH A 75 1175 93 HOH HOH . G 4 HOH A 76 1176 20 HOH HOH . G 4 HOH A 77 1177 14 HOH HOH . G 4 HOH A 78 1178 26 HOH HOH . G 4 HOH A 79 1179 97 HOH HOH . G 4 HOH A 80 1180 8 HOH HOH . G 4 HOH A 81 1181 119 HOH HOH . G 4 HOH A 82 1182 125 HOH HOH . G 4 HOH A 83 1183 195 HOH HOH . G 4 HOH A 84 1184 108 HOH HOH . G 4 HOH A 85 1185 80 HOH HOH . G 4 HOH A 86 1186 193 HOH HOH . G 4 HOH A 87 1187 182 HOH HOH . G 4 HOH A 88 1188 47 HOH HOH . G 4 HOH A 89 1189 16 HOH HOH . G 4 HOH A 90 1190 44 HOH HOH . G 4 HOH A 91 1191 12 HOH HOH . G 4 HOH A 92 1192 18 HOH HOH . G 4 HOH A 93 1193 113 HOH HOH . G 4 HOH A 94 1194 98 HOH HOH . G 4 HOH A 95 1195 67 HOH HOH . G 4 HOH A 96 1196 133 HOH HOH . G 4 HOH A 97 1197 103 HOH HOH . G 4 HOH A 98 1198 183 HOH HOH . G 4 HOH A 99 1199 17 HOH HOH . G 4 HOH A 100 1200 75 HOH HOH . G 4 HOH A 101 1201 168 HOH HOH . G 4 HOH A 102 1202 46 HOH HOH . G 4 HOH A 103 1203 68 HOH HOH . G 4 HOH A 104 1204 32 HOH HOH . G 4 HOH A 105 1205 187 HOH HOH . G 4 HOH A 106 1206 185 HOH HOH . G 4 HOH A 107 1207 86 HOH HOH . G 4 HOH A 108 1208 40 HOH HOH . G 4 HOH A 109 1209 110 HOH HOH . G 4 HOH A 110 1210 76 HOH HOH . G 4 HOH A 111 1211 21 HOH HOH . G 4 HOH A 112 1212 176 HOH HOH . G 4 HOH A 113 1213 150 HOH HOH . G 4 HOH A 114 1214 79 HOH HOH . G 4 HOH A 115 1215 101 HOH HOH . G 4 HOH A 116 1216 13 HOH HOH . G 4 HOH A 117 1217 112 HOH HOH . G 4 HOH A 118 1218 64 HOH HOH . G 4 HOH A 119 1219 92 HOH HOH . G 4 HOH A 120 1220 114 HOH HOH . G 4 HOH A 121 1221 99 HOH HOH . G 4 HOH A 122 1222 37 HOH HOH . G 4 HOH A 123 1223 115 HOH HOH . G 4 HOH A 124 1224 154 HOH HOH . G 4 HOH A 125 1225 127 HOH HOH . G 4 HOH A 126 1226 2 HOH HOH . G 4 HOH A 127 1227 107 HOH HOH . G 4 HOH A 128 1228 94 HOH HOH . G 4 HOH A 129 1229 59 HOH HOH . G 4 HOH A 130 1230 90 HOH HOH . G 4 HOH A 131 1231 91 HOH HOH . G 4 HOH A 132 1232 27 HOH HOH . G 4 HOH A 133 1233 132 HOH HOH . G 4 HOH A 134 1234 184 HOH HOH . G 4 HOH A 135 1235 171 HOH HOH . G 4 HOH A 136 1236 170 HOH HOH . G 4 HOH A 137 1237 83 HOH HOH . G 4 HOH A 138 1238 188 HOH HOH . G 4 HOH A 139 1239 15 HOH HOH . G 4 HOH A 140 1240 178 HOH HOH . G 4 HOH A 141 1241 145 HOH HOH . G 4 HOH A 142 1242 156 HOH HOH . G 4 HOH A 143 1243 84 HOH HOH . G 4 HOH A 144 1244 169 HOH HOH . G 4 HOH A 145 1245 174 HOH HOH . G 4 HOH A 146 1246 117 HOH HOH . G 4 HOH A 147 1247 140 HOH HOH . G 4 HOH A 148 1248 58 HOH HOH . G 4 HOH A 149 1249 62 HOH HOH . G 4 HOH A 150 1250 161 HOH HOH . G 4 HOH A 151 1251 138 HOH HOH . G 4 HOH A 152 1252 143 HOH HOH . G 4 HOH A 153 1253 139 HOH HOH . G 4 HOH A 154 1254 165 HOH HOH . G 4 HOH A 155 1255 39 HOH HOH . G 4 HOH A 156 1256 128 HOH HOH . G 4 HOH A 157 1257 89 HOH HOH . G 4 HOH A 158 1258 141 HOH HOH . G 4 HOH A 159 1259 164 HOH HOH . G 4 HOH A 160 1260 100 HOH HOH . G 4 HOH A 161 1261 96 HOH HOH . G 4 HOH A 162 1262 121 HOH HOH . G 4 HOH A 163 1263 134 HOH HOH . G 4 HOH A 164 1264 146 HOH HOH . G 4 HOH A 165 1265 124 HOH HOH . G 4 HOH A 166 1266 189 HOH HOH . G 4 HOH A 167 1267 175 HOH HOH . G 4 HOH A 168 1268 163 HOH HOH . G 4 HOH A 169 1269 147 HOH HOH . G 4 HOH A 170 1270 190 HOH HOH . G 4 HOH A 171 1271 153 HOH HOH . G 4 HOH A 172 1272 196 HOH HOH . G 4 HOH A 173 1273 167 HOH HOH . G 4 HOH A 174 1274 136 HOH HOH . G 4 HOH A 175 1275 186 HOH HOH . G 4 HOH A 176 1276 131 HOH HOH . G 4 HOH A 177 1277 38 HOH HOH . G 4 HOH A 178 1278 34 HOH HOH . G 4 HOH A 179 1279 72 HOH HOH . G 4 HOH A 180 1280 123 HOH HOH . G 4 HOH A 181 1281 155 HOH HOH . G 4 HOH A 182 1282 179 HOH HOH . G 4 HOH A 183 1283 118 HOH HOH . G 4 HOH A 184 1284 151 HOH HOH . G 4 HOH A 185 1285 172 HOH HOH . G 4 HOH A 186 1286 177 HOH HOH . G 4 HOH A 187 1287 135 HOH HOH . G 4 HOH A 188 1288 120 HOH HOH . G 4 HOH A 189 1289 137 HOH HOH . G 4 HOH A 190 1290 95 HOH HOH . G 4 HOH A 191 1291 166 HOH HOH . G 4 HOH A 192 1292 78 HOH HOH . G 4 HOH A 193 1293 149 HOH HOH . G 4 HOH A 194 1294 198 HOH HOH . G 4 HOH A 195 1295 116 HOH HOH . G 4 HOH A 196 1296 191 HOH HOH . G 4 HOH A 197 1297 122 HOH HOH . G 4 HOH A 198 1298 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UGD . . . B 2 6.326 0.65 17.488 0.48 40.76 ? N1 UGD 1001 A 1 HETATM 2 N N3 UGD . . . B 2 12.692 4.956 22.124 0.48 45.41 ? N3 UGD 1001 A 1 HETATM 3 C C4 UGD . . . B 2 5.304 1.392 17.915 0.48 40.98 ? C4 UGD 1001 A 1 HETATM 4 C C5 UGD . . . B 2 6.919 -0.102 18.421 0.48 40.96 ? C5 UGD 1001 A 1 HETATM 5 C C6 UGD . . . B 2 10.962 -0.026 21.969 0.48 43.97 ? C6 UGD 1001 A 1 HETATM 6 C C7 UGD . . . B 2 11.999 -0.937 22.137 0.48 44.33 ? C7 UGD 1001 A 1 HETATM 7 C C8 UGD . . . B 2 13.192 -0.527 22.711 0.48 44.63 ? C8 UGD 1001 A 1 HETATM 8 C C10 UGD . . . B 2 12.306 1.674 23.003 0.48 44.74 ? C10 UGD 1001 A 1 HETATM 9 C C13 UGD . . . B 2 13.561 5.805 22.701 0.48 45.55 ? C13 UGD 1001 A 1 HETATM 10 O O2 UGD . . . B 2 13.822 6.984 22.482 0.48 45.71 ? O2 UGD 1001 A 1 HETATM 11 C C12 UGD . . . B 2 14.115 4.722 23.613 0.48 45.42 ? C12 UGD 1001 A 1 HETATM 12 C C11 UGD . . . B 2 13.372 3.753 22.681 0.48 45.37 ? C11 UGD 1001 A 1 HETATM 13 O O1 UGD . . . B 2 12.454 2.959 23.476 0.48 45.09 ? O1 UGD 1001 A 1 HETATM 14 C C9 UGD . . . B 2 13.352 0.778 23.148 0.48 44.73 ? C9 UGD 1001 A 1 HETATM 15 C C14 UGD . . . B 2 11.113 1.287 22.409 0.48 44.3 ? C14 UGD 1001 A 1 HETATM 16 N N2 UGD . . . B 2 9.773 -0.498 21.366 0.48 43.21 ? N2 UGD 1001 A 1 HETATM 17 C C UGD . . . B 2 8.655 0.193 21.055 0.48 42.47 ? C UGD 1001 A 1 HETATM 18 O O UGD . . . B 2 8.608 1.416 20.958 0.48 42.39 ? O UGD 1001 A 1 HETATM 19 C C1 UGD . . . B 2 7.434 -0.673 20.823 0.48 41.87 ? C1 UGD 1001 A 1 HETATM 20 C C2 UGD . . . B 2 6.52 -0.135 19.747 0.48 41.35 ? C2 UGD 1001 A 1 HETATM 21 N N UGD . . . B 2 4.834 1.469 19.161 0.48 41.24 ? N UGD 1001 A 1 HETATM 22 C C3 UGD . . . B 2 5.461 0.701 20.059 0.48 41.26 ? C3 UGD 1001 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #