data_5RGU
#
_model_server_result.job_id            VMmgT2xYoeC58PHP_RDxbA 
_model_server_result.datetime_utc      '2024-11-21 11:22:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5rgu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1004}' 
#
_entry.id    5RGU 
#
_exptl.entry_id    5RGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.85 
_cell.angle_gamma         90 
_cell.entry_id            5RGU 
_cell.length_a            112.358 
_cell.length_b            52.888 
_cell.length_c            44.751 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5RGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     5RGU 
_atom_sites.fract_transf_matrix[1][1]    0.0089 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00203 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018908 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02292 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UGD A 1 1001 1001 UGD LIG . 
C 3 DMS A 1 1002 1002 DMS DMS . 
D 3 DMS A 1 1003 1003 DMS DMS . 
E 3 DMS A 1 1004 1004 DMS DMS . 
F 3 DMS A 1 1005 1006 DMS DMS . 
G 4 HOH A 1 1101 142 HOH HOH . 
G 4 HOH A 2 1102 77 HOH HOH . 
G 4 HOH A 3 1103 105 HOH HOH . 
G 4 HOH A 4 1104 1 HOH HOH . 
G 4 HOH A 5 1105 57 HOH HOH . 
G 4 HOH A 6 1106 30 HOH HOH . 
G 4 HOH A 7 1107 35 HOH HOH . 
G 4 HOH A 8 1108 104 HOH HOH . 
G 4 HOH A 9 1109 152 HOH HOH . 
G 4 HOH A 10 1110 158 HOH HOH . 
G 4 HOH A 11 1111 9 HOH HOH . 
G 4 HOH A 12 1112 31 HOH HOH . 
G 4 HOH A 13 1113 29 HOH HOH . 
G 4 HOH A 14 1114 61 HOH HOH . 
G 4 HOH A 15 1115 181 HOH HOH . 
G 4 HOH A 16 1116 49 HOH HOH . 
G 4 HOH A 17 1117 65 HOH HOH . 
G 4 HOH A 18 1118 51 HOH HOH . 
G 4 HOH A 19 1119 33 HOH HOH . 
G 4 HOH A 20 1120 82 HOH HOH . 
G 4 HOH A 21 1121 160 HOH HOH . 
G 4 HOH A 22 1122 148 HOH HOH . 
G 4 HOH A 23 1123 42 HOH HOH . 
G 4 HOH A 24 1124 25 HOH HOH . 
G 4 HOH A 25 1125 85 HOH HOH . 
G 4 HOH A 26 1126 106 HOH HOH . 
G 4 HOH A 27 1127 130 HOH HOH . 
G 4 HOH A 28 1128 87 HOH HOH . 
G 4 HOH A 29 1129 71 HOH HOH . 
G 4 HOH A 30 1130 7 HOH HOH . 
G 4 HOH A 31 1131 81 HOH HOH . 
G 4 HOH A 32 1132 3 HOH HOH . 
G 4 HOH A 33 1133 24 HOH HOH . 
G 4 HOH A 34 1134 11 HOH HOH . 
G 4 HOH A 35 1135 70 HOH HOH . 
G 4 HOH A 36 1136 192 HOH HOH . 
G 4 HOH A 37 1137 6 HOH HOH . 
G 4 HOH A 38 1138 74 HOH HOH . 
G 4 HOH A 39 1139 159 HOH HOH . 
G 4 HOH A 40 1140 54 HOH HOH . 
G 4 HOH A 41 1141 88 HOH HOH . 
G 4 HOH A 42 1142 5 HOH HOH . 
G 4 HOH A 43 1143 53 HOH HOH . 
G 4 HOH A 44 1144 4 HOH HOH . 
G 4 HOH A 45 1145 36 HOH HOH . 
G 4 HOH A 46 1146 48 HOH HOH . 
G 4 HOH A 47 1147 22 HOH HOH . 
G 4 HOH A 48 1148 50 HOH HOH . 
G 4 HOH A 49 1149 157 HOH HOH . 
G 4 HOH A 50 1150 66 HOH HOH . 
G 4 HOH A 51 1151 23 HOH HOH . 
G 4 HOH A 52 1152 43 HOH HOH . 
G 4 HOH A 53 1153 56 HOH HOH . 
G 4 HOH A 54 1154 63 HOH HOH . 
G 4 HOH A 55 1155 45 HOH HOH . 
G 4 HOH A 56 1156 73 HOH HOH . 
G 4 HOH A 57 1157 69 HOH HOH . 
G 4 HOH A 58 1158 173 HOH HOH . 
G 4 HOH A 59 1159 28 HOH HOH . 
G 4 HOH A 60 1160 102 HOH HOH . 
G 4 HOH A 61 1161 52 HOH HOH . 
G 4 HOH A 62 1162 55 HOH HOH . 
G 4 HOH A 63 1163 19 HOH HOH . 
G 4 HOH A 64 1164 111 HOH HOH . 
G 4 HOH A 65 1165 60 HOH HOH . 
G 4 HOH A 66 1166 194 HOH HOH . 
G 4 HOH A 67 1167 10 HOH HOH . 
G 4 HOH A 68 1168 126 HOH HOH . 
G 4 HOH A 69 1169 180 HOH HOH . 
G 4 HOH A 70 1170 129 HOH HOH . 
G 4 HOH A 71 1171 41 HOH HOH . 
G 4 HOH A 72 1172 197 HOH HOH . 
G 4 HOH A 73 1173 162 HOH HOH . 
G 4 HOH A 74 1174 109 HOH HOH . 
G 4 HOH A 75 1175 93 HOH HOH . 
G 4 HOH A 76 1176 20 HOH HOH . 
G 4 HOH A 77 1177 14 HOH HOH . 
G 4 HOH A 78 1178 26 HOH HOH . 
G 4 HOH A 79 1179 97 HOH HOH . 
G 4 HOH A 80 1180 8 HOH HOH . 
G 4 HOH A 81 1181 119 HOH HOH . 
G 4 HOH A 82 1182 125 HOH HOH . 
G 4 HOH A 83 1183 195 HOH HOH . 
G 4 HOH A 84 1184 108 HOH HOH . 
G 4 HOH A 85 1185 80 HOH HOH . 
G 4 HOH A 86 1186 193 HOH HOH . 
G 4 HOH A 87 1187 182 HOH HOH . 
G 4 HOH A 88 1188 47 HOH HOH . 
G 4 HOH A 89 1189 16 HOH HOH . 
G 4 HOH A 90 1190 44 HOH HOH . 
G 4 HOH A 91 1191 12 HOH HOH . 
G 4 HOH A 92 1192 18 HOH HOH . 
G 4 HOH A 93 1193 113 HOH HOH . 
G 4 HOH A 94 1194 98 HOH HOH . 
G 4 HOH A 95 1195 67 HOH HOH . 
G 4 HOH A 96 1196 133 HOH HOH . 
G 4 HOH A 97 1197 103 HOH HOH . 
G 4 HOH A 98 1198 183 HOH HOH . 
G 4 HOH A 99 1199 17 HOH HOH . 
G 4 HOH A 100 1200 75 HOH HOH . 
G 4 HOH A 101 1201 168 HOH HOH . 
G 4 HOH A 102 1202 46 HOH HOH . 
G 4 HOH A 103 1203 68 HOH HOH . 
G 4 HOH A 104 1204 32 HOH HOH . 
G 4 HOH A 105 1205 187 HOH HOH . 
G 4 HOH A 106 1206 185 HOH HOH . 
G 4 HOH A 107 1207 86 HOH HOH . 
G 4 HOH A 108 1208 40 HOH HOH . 
G 4 HOH A 109 1209 110 HOH HOH . 
G 4 HOH A 110 1210 76 HOH HOH . 
G 4 HOH A 111 1211 21 HOH HOH . 
G 4 HOH A 112 1212 176 HOH HOH . 
G 4 HOH A 113 1213 150 HOH HOH . 
G 4 HOH A 114 1214 79 HOH HOH . 
G 4 HOH A 115 1215 101 HOH HOH . 
G 4 HOH A 116 1216 13 HOH HOH . 
G 4 HOH A 117 1217 112 HOH HOH . 
G 4 HOH A 118 1218 64 HOH HOH . 
G 4 HOH A 119 1219 92 HOH HOH . 
G 4 HOH A 120 1220 114 HOH HOH . 
G 4 HOH A 121 1221 99 HOH HOH . 
G 4 HOH A 122 1222 37 HOH HOH . 
G 4 HOH A 123 1223 115 HOH HOH . 
G 4 HOH A 124 1224 154 HOH HOH . 
G 4 HOH A 125 1225 127 HOH HOH . 
G 4 HOH A 126 1226 2 HOH HOH . 
G 4 HOH A 127 1227 107 HOH HOH . 
G 4 HOH A 128 1228 94 HOH HOH . 
G 4 HOH A 129 1229 59 HOH HOH . 
G 4 HOH A 130 1230 90 HOH HOH . 
G 4 HOH A 131 1231 91 HOH HOH . 
G 4 HOH A 132 1232 27 HOH HOH . 
G 4 HOH A 133 1233 132 HOH HOH . 
G 4 HOH A 134 1234 184 HOH HOH . 
G 4 HOH A 135 1235 171 HOH HOH . 
G 4 HOH A 136 1236 170 HOH HOH . 
G 4 HOH A 137 1237 83 HOH HOH . 
G 4 HOH A 138 1238 188 HOH HOH . 
G 4 HOH A 139 1239 15 HOH HOH . 
G 4 HOH A 140 1240 178 HOH HOH . 
G 4 HOH A 141 1241 145 HOH HOH . 
G 4 HOH A 142 1242 156 HOH HOH . 
G 4 HOH A 143 1243 84 HOH HOH . 
G 4 HOH A 144 1244 169 HOH HOH . 
G 4 HOH A 145 1245 174 HOH HOH . 
G 4 HOH A 146 1246 117 HOH HOH . 
G 4 HOH A 147 1247 140 HOH HOH . 
G 4 HOH A 148 1248 58 HOH HOH . 
G 4 HOH A 149 1249 62 HOH HOH . 
G 4 HOH A 150 1250 161 HOH HOH . 
G 4 HOH A 151 1251 138 HOH HOH . 
G 4 HOH A 152 1252 143 HOH HOH . 
G 4 HOH A 153 1253 139 HOH HOH . 
G 4 HOH A 154 1254 165 HOH HOH . 
G 4 HOH A 155 1255 39 HOH HOH . 
G 4 HOH A 156 1256 128 HOH HOH . 
G 4 HOH A 157 1257 89 HOH HOH . 
G 4 HOH A 158 1258 141 HOH HOH . 
G 4 HOH A 159 1259 164 HOH HOH . 
G 4 HOH A 160 1260 100 HOH HOH . 
G 4 HOH A 161 1261 96 HOH HOH . 
G 4 HOH A 162 1262 121 HOH HOH . 
G 4 HOH A 163 1263 134 HOH HOH . 
G 4 HOH A 164 1264 146 HOH HOH . 
G 4 HOH A 165 1265 124 HOH HOH . 
G 4 HOH A 166 1266 189 HOH HOH . 
G 4 HOH A 167 1267 175 HOH HOH . 
G 4 HOH A 168 1268 163 HOH HOH . 
G 4 HOH A 169 1269 147 HOH HOH . 
G 4 HOH A 170 1270 190 HOH HOH . 
G 4 HOH A 171 1271 153 HOH HOH . 
G 4 HOH A 172 1272 196 HOH HOH . 
G 4 HOH A 173 1273 167 HOH HOH . 
G 4 HOH A 174 1274 136 HOH HOH . 
G 4 HOH A 175 1275 186 HOH HOH . 
G 4 HOH A 176 1276 131 HOH HOH . 
G 4 HOH A 177 1277 38 HOH HOH . 
G 4 HOH A 178 1278 34 HOH HOH . 
G 4 HOH A 179 1279 72 HOH HOH . 
G 4 HOH A 180 1280 123 HOH HOH . 
G 4 HOH A 181 1281 155 HOH HOH . 
G 4 HOH A 182 1282 179 HOH HOH . 
G 4 HOH A 183 1283 118 HOH HOH . 
G 4 HOH A 184 1284 151 HOH HOH . 
G 4 HOH A 185 1285 172 HOH HOH . 
G 4 HOH A 186 1286 177 HOH HOH . 
G 4 HOH A 187 1287 135 HOH HOH . 
G 4 HOH A 188 1288 120 HOH HOH . 
G 4 HOH A 189 1289 137 HOH HOH . 
G 4 HOH A 190 1290 95 HOH HOH . 
G 4 HOH A 191 1291 166 HOH HOH . 
G 4 HOH A 192 1292 78 HOH HOH . 
G 4 HOH A 193 1293 149 HOH HOH . 
G 4 HOH A 194 1294 198 HOH HOH . 
G 4 HOH A 195 1295 116 HOH HOH . 
G 4 HOH A 196 1296 191 HOH HOH . 
G 4 HOH A 197 1297 122 HOH HOH . 
G 4 HOH A 198 1298 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . E 3 2.268 -19.143 8.279 1 73 ? S DMS 1004 A 1 
HETATM 2 O O DMS . . . E 3 3.572 -18.771 8.841 1 73 ? O DMS 1004 A 1 
HETATM 3 C C1 DMS . . . E 3 1.114 -18.101 9.119 1 72.87 ? C1 DMS 1004 A 1 
HETATM 4 C C2 DMS . . . E 3 1.871 -20.678 9.088 1 72.91 ? C2 DMS 1004 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#