data_5RH0 # _model_server_result.job_id BKvdn2A-xhuX3dKb8jdK_g _model_server_result.datetime_utc '2025-07-08 00:24:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5RH0 # _exptl.entry_id 5RH0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 233.29 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(5-methylthiophen-2-yl)-N'-pyridin-3-ylurea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.66 _cell.angle_gamma 90 _cell.entry_id 5RH0 _cell.length_a 112.365 _cell.length_b 52.995 _cell.length_c 44.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H11 N3 O S' _chem_comp.formula_weight 233.29 _chem_comp.id UH4 _chem_comp.mon_nstd_flag . _chem_comp.name "N-(5-methylthiophen-2-yl)-N'-pyridin-3-ylurea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C9 UH4 doub 367 n y N2 C10 UH4 sing 368 n y C9 C8 UH4 sing 369 n y C10 C6 UH4 doub 370 n y C8 C7 UH4 doub 371 n y C6 C7 UH4 sing 372 n y C6 N1 UH4 sing 373 n n O C5 UH4 doub 374 n n N1 C5 UH4 sing 375 n n C5 N UH4 sing 376 n n N C4 UH4 sing 377 n n S C4 UH4 sing 378 n y S C1 UH4 sing 379 n y C4 C3 UH4 doub 380 n y C1 C UH4 sing 381 n n C1 C2 UH4 doub 382 n y C3 C2 UH4 sing 383 n y N1 H1 UH4 sing 384 n n C7 H2 UH4 sing 385 n n C8 H3 UH4 sing 386 n n C10 H4 UH4 sing 387 n n N H5 UH4 sing 388 n n C3 H6 UH4 sing 389 n n C2 H7 UH4 sing 390 n n C H8 UH4 sing 391 n n C H9 UH4 sing 392 n n C H10 UH4 sing 393 n n C9 H11 UH4 sing 394 n n # _atom_sites.entry_id 5RH0 _atom_sites.fract_transf_matrix[1][1] 0.0089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001999 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UH4 A 1 1001 1001 UH4 LIG . C 3 DMS A 1 1002 1002 DMS DMS . D 3 DMS A 1 1003 1003 DMS DMS . E 3 DMS A 1 1004 1004 DMS DMS . F 3 DMS A 1 1005 1006 DMS DMS . G 4 HOH A 1 1101 71 HOH HOH . G 4 HOH A 2 1102 89 HOH HOH . G 4 HOH A 3 1103 25 HOH HOH . G 4 HOH A 4 1104 1 HOH HOH . G 4 HOH A 5 1105 51 HOH HOH . G 4 HOH A 6 1106 124 HOH HOH . G 4 HOH A 7 1107 67 HOH HOH . G 4 HOH A 8 1108 55 HOH HOH . G 4 HOH A 9 1109 17 HOH HOH . G 4 HOH A 10 1110 21 HOH HOH . G 4 HOH A 11 1111 121 HOH HOH . G 4 HOH A 12 1112 31 HOH HOH . G 4 HOH A 13 1113 72 HOH HOH . G 4 HOH A 14 1114 46 HOH HOH . G 4 HOH A 15 1115 28 HOH HOH . G 4 HOH A 16 1116 108 HOH HOH . G 4 HOH A 17 1117 44 HOH HOH . G 4 HOH A 18 1118 7 HOH HOH . G 4 HOH A 19 1119 12 HOH HOH . G 4 HOH A 20 1120 135 HOH HOH . G 4 HOH A 21 1121 18 HOH HOH . G 4 HOH A 22 1122 97 HOH HOH . G 4 HOH A 23 1123 99 HOH HOH . G 4 HOH A 24 1124 48 HOH HOH . G 4 HOH A 25 1125 6 HOH HOH . G 4 HOH A 26 1126 82 HOH HOH . G 4 HOH A 27 1127 106 HOH HOH . G 4 HOH A 28 1128 57 HOH HOH . G 4 HOH A 29 1129 91 HOH HOH . G 4 HOH A 30 1130 58 HOH HOH . G 4 HOH A 31 1131 29 HOH HOH . G 4 HOH A 32 1132 39 HOH HOH . G 4 HOH A 33 1133 60 HOH HOH . G 4 HOH A 34 1134 38 HOH HOH . G 4 HOH A 35 1135 63 HOH HOH . G 4 HOH A 36 1136 30 HOH HOH . G 4 HOH A 37 1137 33 HOH HOH . G 4 HOH A 38 1138 4 HOH HOH . G 4 HOH A 39 1139 23 HOH HOH . G 4 HOH A 40 1140 54 HOH HOH . G 4 HOH A 41 1141 52 HOH HOH . G 4 HOH A 42 1142 141 HOH HOH . G 4 HOH A 43 1143 49 HOH HOH . G 4 HOH A 44 1144 143 HOH HOH . G 4 HOH A 45 1145 144 HOH HOH . G 4 HOH A 46 1146 70 HOH HOH . G 4 HOH A 47 1147 40 HOH HOH . G 4 HOH A 48 1148 142 HOH HOH . G 4 HOH A 49 1149 45 HOH HOH . G 4 HOH A 50 1150 133 HOH HOH . G 4 HOH A 51 1151 88 HOH HOH . G 4 HOH A 52 1152 59 HOH HOH . G 4 HOH A 53 1153 5 HOH HOH . G 4 HOH A 54 1154 43 HOH HOH . G 4 HOH A 55 1155 75 HOH HOH . G 4 HOH A 56 1156 9 HOH HOH . G 4 HOH A 57 1157 84 HOH HOH . G 4 HOH A 58 1158 24 HOH HOH . G 4 HOH A 59 1159 140 HOH HOH . G 4 HOH A 60 1160 3 HOH HOH . G 4 HOH A 61 1161 110 HOH HOH . G 4 HOH A 62 1162 14 HOH HOH . G 4 HOH A 63 1163 64 HOH HOH . G 4 HOH A 64 1164 32 HOH HOH . G 4 HOH A 65 1165 50 HOH HOH . G 4 HOH A 66 1166 122 HOH HOH . G 4 HOH A 67 1167 8 HOH HOH . G 4 HOH A 68 1168 16 HOH HOH . G 4 HOH A 69 1169 62 HOH HOH . G 4 HOH A 70 1170 132 HOH HOH . G 4 HOH A 71 1171 11 HOH HOH . G 4 HOH A 72 1172 125 HOH HOH . G 4 HOH A 73 1173 69 HOH HOH . G 4 HOH A 74 1174 42 HOH HOH . G 4 HOH A 75 1175 137 HOH HOH . G 4 HOH A 76 1176 74 HOH HOH . G 4 HOH A 77 1177 95 HOH HOH . G 4 HOH A 78 1178 27 HOH HOH . G 4 HOH A 79 1179 101 HOH HOH . G 4 HOH A 80 1180 41 HOH HOH . G 4 HOH A 81 1181 34 HOH HOH . G 4 HOH A 82 1182 65 HOH HOH . G 4 HOH A 83 1183 61 HOH HOH . G 4 HOH A 84 1184 20 HOH HOH . G 4 HOH A 85 1185 86 HOH HOH . G 4 HOH A 86 1186 36 HOH HOH . G 4 HOH A 87 1187 47 HOH HOH . G 4 HOH A 88 1188 19 HOH HOH . G 4 HOH A 89 1189 81 HOH HOH . G 4 HOH A 90 1190 37 HOH HOH . G 4 HOH A 91 1191 66 HOH HOH . G 4 HOH A 92 1192 22 HOH HOH . G 4 HOH A 93 1193 15 HOH HOH . G 4 HOH A 94 1194 76 HOH HOH . G 4 HOH A 95 1195 78 HOH HOH . G 4 HOH A 96 1196 87 HOH HOH . G 4 HOH A 97 1197 10 HOH HOH . G 4 HOH A 98 1198 2 HOH HOH . G 4 HOH A 99 1199 56 HOH HOH . G 4 HOH A 100 1200 13 HOH HOH . G 4 HOH A 101 1201 123 HOH HOH . G 4 HOH A 102 1202 90 HOH HOH . G 4 HOH A 103 1203 53 HOH HOH . G 4 HOH A 104 1204 116 HOH HOH . G 4 HOH A 105 1205 85 HOH HOH . G 4 HOH A 106 1206 109 HOH HOH . G 4 HOH A 107 1207 117 HOH HOH . G 4 HOH A 108 1208 73 HOH HOH . G 4 HOH A 109 1209 128 HOH HOH . G 4 HOH A 110 1210 80 HOH HOH . G 4 HOH A 111 1211 107 HOH HOH . G 4 HOH A 112 1212 98 HOH HOH . G 4 HOH A 113 1213 105 HOH HOH . G 4 HOH A 114 1214 26 HOH HOH . G 4 HOH A 115 1215 126 HOH HOH . G 4 HOH A 116 1216 115 HOH HOH . G 4 HOH A 117 1217 83 HOH HOH . G 4 HOH A 118 1218 93 HOH HOH . G 4 HOH A 119 1219 94 HOH HOH . G 4 HOH A 120 1220 136 HOH HOH . G 4 HOH A 121 1221 96 HOH HOH . G 4 HOH A 122 1222 92 HOH HOH . G 4 HOH A 123 1223 114 HOH HOH . G 4 HOH A 124 1224 79 HOH HOH . G 4 HOH A 125 1225 113 HOH HOH . G 4 HOH A 126 1226 127 HOH HOH . G 4 HOH A 127 1227 102 HOH HOH . G 4 HOH A 128 1228 134 HOH HOH . G 4 HOH A 129 1229 139 HOH HOH . G 4 HOH A 130 1230 119 HOH HOH . G 4 HOH A 131 1231 120 HOH HOH . G 4 HOH A 132 1232 138 HOH HOH . G 4 HOH A 133 1233 112 HOH HOH . G 4 HOH A 134 1234 104 HOH HOH . G 4 HOH A 135 1235 111 HOH HOH . G 4 HOH A 136 1236 100 HOH HOH . G 4 HOH A 137 1237 77 HOH HOH . G 4 HOH A 138 1238 103 HOH HOH . G 4 HOH A 139 1239 35 HOH HOH . G 4 HOH A 140 1240 129 HOH HOH . G 4 HOH A 141 1241 131 HOH HOH . G 4 HOH A 142 1242 68 HOH HOH . G 4 HOH A 143 1243 130 HOH HOH . G 4 HOH A 144 1244 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UH4 . . . B 2 7.231 -0.687 20.729 0.66 65.24 ? N1 UH4 1001 A 1 HETATM 2 C C4 UH4 . . . B 2 10.329 -0.412 22.572 0.66 68.27 ? C4 UH4 1001 A 1 HETATM 3 C C5 UH4 . . . B 2 8.418 -0.151 21.129 0.66 66.01 ? C5 UH4 1001 A 1 HETATM 4 C C6 UH4 . . . B 2 6.351 -0.06 19.825 0.66 64.32 ? C6 UH4 1001 A 1 HETATM 5 C C7 UH4 . . . B 2 5.22 0.611 20.272 0.66 63.96 ? C7 UH4 1001 A 1 HETATM 6 C C8 UH4 . . . B 2 4.482 1.366 19.378 0.66 63.65 ? C8 UH4 1001 A 1 HETATM 7 C C10 UH4 . . . B 2 6.671 0.031 18.471 0.66 63.66 ? C10 UH4 1001 A 1 HETATM 8 O O UH4 . . . B 2 8.848 0.915 20.698 0.66 65.58 ? O UH4 1001 A 1 HETATM 9 N N UH4 . . . B 2 9.112 -0.879 22.082 0.66 67.2 ? N UH4 1001 A 1 HETATM 10 C C3 UH4 . . . B 2 11.24 -1.144 23.273 0.66 68.56 ? C3 UH4 1001 A 1 HETATM 11 C C2 UH4 . . . B 2 12.418 -0.416 23.551 0.66 68.73 ? C2 UH4 1001 A 1 HETATM 12 S S UH4 . . . B 2 10.912 1.189 22.276 0.66 68.99 ? S UH4 1001 A 1 HETATM 13 C C1 UH4 . . . B 2 12.408 0.856 23.067 0.66 68.9 ? C1 UH4 1001 A 1 HETATM 14 C C UH4 . . . B 2 13.494 1.88 23.093 0.66 68.83 ? C UH4 1001 A 1 HETATM 15 N N2 UH4 . . . B 2 5.958 0.746 17.593 0.66 63.34 ? N2 UH4 1001 A 1 HETATM 16 C C9 UH4 . . . B 2 4.891 1.407 18.059 0.66 63.43 ? C9 UH4 1001 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #