data_5RH1 # _model_server_result.job_id ZDnPBpUBZxBG-CGTIPGzVA _model_server_result.datetime_utc '2024-10-18 06:15:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rh1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5RH1 # _exptl.entry_id 5RH1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 252.72 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(5-chlorothiophen-2-yl)-N-(pyridin-3-yl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.63 _cell.angle_gamma 90 _cell.entry_id 5RH1 _cell.length_a 112.475 _cell.length_b 52.98 _cell.length_c 44.715 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RH1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H9 Cl N2 O S' _chem_comp.formula_weight 252.72 _chem_comp.id UGV _chem_comp.mon_nstd_flag . _chem_comp.name 2-(5-chlorothiophen-2-yl)-N-(pyridin-3-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C9 UGV doub 367 n y N1 C10 UGV sing 368 n y C9 C8 UGV sing 369 n y C10 C6 UGV doub 370 n y C8 C7 UGV doub 371 n y C6 C7 UGV sing 372 n y C6 N UGV sing 373 n n N C5 UGV sing 374 n n O C5 UGV doub 375 n n C5 C4 UGV sing 376 n n S C3 UGV sing 377 n y S C UGV sing 378 n y C4 C3 UGV sing 379 n n C3 C2 UGV doub 380 n y C CL UGV sing 381 n n C C1 UGV doub 382 n y C2 C1 UGV sing 383 n y C4 H1 UGV sing 384 n n C4 H2 UGV sing 385 n n C7 H3 UGV sing 386 n n C8 H4 UGV sing 387 n n C10 H5 UGV sing 388 n n C2 H6 UGV sing 389 n n C1 H7 UGV sing 390 n n N H8 UGV sing 391 n n C9 H9 UGV sing 392 n n # _atom_sites.entry_id 5RH1 _atom_sites.fract_transf_matrix[1][1] 0.008891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001992 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UGV A 1 1001 1001 UGV LIG . C 3 DMS A 1 1002 1002 DMS DMS . D 3 DMS A 1 1003 1003 DMS DMS . E 3 DMS A 1 1004 1004 DMS DMS . F 3 DMS A 1 1005 1006 DMS DMS . G 4 HOH A 1 1101 145 HOH HOH . G 4 HOH A 2 1102 170 HOH HOH . G 4 HOH A 3 1103 103 HOH HOH . G 4 HOH A 4 1104 163 HOH HOH . G 4 HOH A 5 1105 79 HOH HOH . G 4 HOH A 6 1106 121 HOH HOH . G 4 HOH A 7 1107 56 HOH HOH . G 4 HOH A 8 1108 62 HOH HOH . G 4 HOH A 9 1109 101 HOH HOH . G 4 HOH A 10 1110 33 HOH HOH . G 4 HOH A 11 1111 27 HOH HOH . G 4 HOH A 12 1112 69 HOH HOH . G 4 HOH A 13 1113 38 HOH HOH . G 4 HOH A 14 1114 84 HOH HOH . G 4 HOH A 15 1115 9 HOH HOH . G 4 HOH A 16 1116 96 HOH HOH . G 4 HOH A 17 1117 54 HOH HOH . G 4 HOH A 18 1118 31 HOH HOH . G 4 HOH A 19 1119 58 HOH HOH . G 4 HOH A 20 1120 171 HOH HOH . G 4 HOH A 21 1121 4 HOH HOH . G 4 HOH A 22 1122 35 HOH HOH . G 4 HOH A 23 1123 70 HOH HOH . G 4 HOH A 24 1124 81 HOH HOH . G 4 HOH A 25 1125 144 HOH HOH . G 4 HOH A 26 1126 34 HOH HOH . G 4 HOH A 27 1127 110 HOH HOH . G 4 HOH A 28 1128 93 HOH HOH . G 4 HOH A 29 1129 48 HOH HOH . G 4 HOH A 30 1130 66 HOH HOH . G 4 HOH A 31 1131 41 HOH HOH . G 4 HOH A 32 1132 37 HOH HOH . G 4 HOH A 33 1133 30 HOH HOH . G 4 HOH A 34 1134 6 HOH HOH . G 4 HOH A 35 1135 102 HOH HOH . G 4 HOH A 36 1136 28 HOH HOH . G 4 HOH A 37 1137 55 HOH HOH . G 4 HOH A 38 1138 141 HOH HOH . G 4 HOH A 39 1139 20 HOH HOH . G 4 HOH A 40 1140 39 HOH HOH . G 4 HOH A 41 1141 3 HOH HOH . G 4 HOH A 42 1142 113 HOH HOH . G 4 HOH A 43 1143 26 HOH HOH . G 4 HOH A 44 1144 49 HOH HOH . G 4 HOH A 45 1145 12 HOH HOH . G 4 HOH A 46 1146 142 HOH HOH . G 4 HOH A 47 1147 85 HOH HOH . G 4 HOH A 48 1148 89 HOH HOH . G 4 HOH A 49 1149 32 HOH HOH . G 4 HOH A 50 1150 138 HOH HOH . G 4 HOH A 51 1151 168 HOH HOH . G 4 HOH A 52 1152 160 HOH HOH . G 4 HOH A 53 1153 11 HOH HOH . G 4 HOH A 54 1154 19 HOH HOH . G 4 HOH A 55 1155 72 HOH HOH . G 4 HOH A 56 1156 22 HOH HOH . G 4 HOH A 57 1157 73 HOH HOH . G 4 HOH A 58 1158 5 HOH HOH . G 4 HOH A 59 1159 165 HOH HOH . G 4 HOH A 60 1160 1 HOH HOH . G 4 HOH A 61 1161 71 HOH HOH . G 4 HOH A 62 1162 75 HOH HOH . G 4 HOH A 63 1163 98 HOH HOH . G 4 HOH A 64 1164 15 HOH HOH . G 4 HOH A 65 1165 7 HOH HOH . G 4 HOH A 66 1166 80 HOH HOH . G 4 HOH A 67 1167 203 HOH HOH . G 4 HOH A 68 1168 23 HOH HOH . G 4 HOH A 69 1169 106 HOH HOH . G 4 HOH A 70 1170 112 HOH HOH . G 4 HOH A 71 1171 10 HOH HOH . G 4 HOH A 72 1172 195 HOH HOH . G 4 HOH A 73 1173 25 HOH HOH . G 4 HOH A 74 1174 59 HOH HOH . G 4 HOH A 75 1175 105 HOH HOH . G 4 HOH A 76 1176 197 HOH HOH . G 4 HOH A 77 1177 174 HOH HOH . G 4 HOH A 78 1178 53 HOH HOH . G 4 HOH A 79 1179 78 HOH HOH . G 4 HOH A 80 1180 111 HOH HOH . G 4 HOH A 81 1181 61 HOH HOH . G 4 HOH A 82 1182 107 HOH HOH . G 4 HOH A 83 1183 132 HOH HOH . G 4 HOH A 84 1184 24 HOH HOH . G 4 HOH A 85 1185 169 HOH HOH . G 4 HOH A 86 1186 17 HOH HOH . G 4 HOH A 87 1187 108 HOH HOH . G 4 HOH A 88 1188 47 HOH HOH . G 4 HOH A 89 1189 46 HOH HOH . G 4 HOH A 90 1190 64 HOH HOH . G 4 HOH A 91 1191 8 HOH HOH . G 4 HOH A 92 1192 115 HOH HOH . G 4 HOH A 93 1193 123 HOH HOH . G 4 HOH A 94 1194 13 HOH HOH . G 4 HOH A 95 1195 83 HOH HOH . G 4 HOH A 96 1196 181 HOH HOH . G 4 HOH A 97 1197 50 HOH HOH . G 4 HOH A 98 1198 57 HOH HOH . G 4 HOH A 99 1199 18 HOH HOH . G 4 HOH A 100 1200 100 HOH HOH . G 4 HOH A 101 1201 2 HOH HOH . G 4 HOH A 102 1202 67 HOH HOH . G 4 HOH A 103 1203 68 HOH HOH . G 4 HOH A 104 1204 99 HOH HOH . G 4 HOH A 105 1205 91 HOH HOH . G 4 HOH A 106 1206 109 HOH HOH . G 4 HOH A 107 1207 74 HOH HOH . G 4 HOH A 108 1208 14 HOH HOH . G 4 HOH A 109 1209 21 HOH HOH . G 4 HOH A 110 1210 51 HOH HOH . G 4 HOH A 111 1211 172 HOH HOH . G 4 HOH A 112 1212 143 HOH HOH . G 4 HOH A 113 1213 201 HOH HOH . G 4 HOH A 114 1214 124 HOH HOH . G 4 HOH A 115 1215 139 HOH HOH . G 4 HOH A 116 1216 44 HOH HOH . G 4 HOH A 117 1217 45 HOH HOH . G 4 HOH A 118 1218 16 HOH HOH . G 4 HOH A 119 1219 90 HOH HOH . G 4 HOH A 120 1220 156 HOH HOH . G 4 HOH A 121 1221 40 HOH HOH . G 4 HOH A 122 1222 127 HOH HOH . G 4 HOH A 123 1223 92 HOH HOH . G 4 HOH A 124 1224 177 HOH HOH . G 4 HOH A 125 1225 52 HOH HOH . G 4 HOH A 126 1226 173 HOH HOH . G 4 HOH A 127 1227 164 HOH HOH . G 4 HOH A 128 1228 182 HOH HOH . G 4 HOH A 129 1229 29 HOH HOH . G 4 HOH A 130 1230 87 HOH HOH . G 4 HOH A 131 1231 135 HOH HOH . G 4 HOH A 132 1232 186 HOH HOH . G 4 HOH A 133 1233 97 HOH HOH . G 4 HOH A 134 1234 88 HOH HOH . G 4 HOH A 135 1235 179 HOH HOH . G 4 HOH A 136 1236 188 HOH HOH . G 4 HOH A 137 1237 147 HOH HOH . G 4 HOH A 138 1238 150 HOH HOH . G 4 HOH A 139 1239 193 HOH HOH . G 4 HOH A 140 1240 137 HOH HOH . G 4 HOH A 141 1241 134 HOH HOH . G 4 HOH A 142 1242 176 HOH HOH . G 4 HOH A 143 1243 166 HOH HOH . G 4 HOH A 144 1244 125 HOH HOH . G 4 HOH A 145 1245 162 HOH HOH . G 4 HOH A 146 1246 77 HOH HOH . G 4 HOH A 147 1247 200 HOH HOH . G 4 HOH A 148 1248 114 HOH HOH . G 4 HOH A 149 1249 94 HOH HOH . G 4 HOH A 150 1250 178 HOH HOH . G 4 HOH A 151 1251 191 HOH HOH . G 4 HOH A 152 1252 117 HOH HOH . G 4 HOH A 153 1253 187 HOH HOH . G 4 HOH A 154 1254 185 HOH HOH . G 4 HOH A 155 1255 104 HOH HOH . G 4 HOH A 156 1256 184 HOH HOH . G 4 HOH A 157 1257 198 HOH HOH . G 4 HOH A 158 1258 140 HOH HOH . G 4 HOH A 159 1259 153 HOH HOH . G 4 HOH A 160 1260 65 HOH HOH . G 4 HOH A 161 1261 128 HOH HOH . G 4 HOH A 162 1262 43 HOH HOH . G 4 HOH A 163 1263 192 HOH HOH . G 4 HOH A 164 1264 119 HOH HOH . G 4 HOH A 165 1265 136 HOH HOH . G 4 HOH A 166 1266 159 HOH HOH . G 4 HOH A 167 1267 189 HOH HOH . G 4 HOH A 168 1268 120 HOH HOH . G 4 HOH A 169 1269 157 HOH HOH . G 4 HOH A 170 1270 149 HOH HOH . G 4 HOH A 171 1271 154 HOH HOH . G 4 HOH A 172 1272 202 HOH HOH . G 4 HOH A 173 1273 155 HOH HOH . G 4 HOH A 174 1274 167 HOH HOH . G 4 HOH A 175 1275 122 HOH HOH . G 4 HOH A 176 1276 63 HOH HOH . G 4 HOH A 177 1277 151 HOH HOH . G 4 HOH A 178 1278 116 HOH HOH . G 4 HOH A 179 1279 194 HOH HOH . G 4 HOH A 180 1280 133 HOH HOH . G 4 HOH A 181 1281 130 HOH HOH . G 4 HOH A 182 1282 131 HOH HOH . G 4 HOH A 183 1283 146 HOH HOH . G 4 HOH A 184 1284 180 HOH HOH . G 4 HOH A 185 1285 95 HOH HOH . G 4 HOH A 186 1286 158 HOH HOH . G 4 HOH A 187 1287 86 HOH HOH . G 4 HOH A 188 1288 183 HOH HOH . G 4 HOH A 189 1289 126 HOH HOH . G 4 HOH A 190 1290 76 HOH HOH . G 4 HOH A 191 1291 175 HOH HOH . G 4 HOH A 192 1292 152 HOH HOH . G 4 HOH A 193 1293 60 HOH HOH . G 4 HOH A 194 1294 42 HOH HOH . G 4 HOH A 195 1295 36 HOH HOH . G 4 HOH A 196 1296 148 HOH HOH . G 4 HOH A 197 1297 196 HOH HOH . G 4 HOH A 198 1298 82 HOH HOH . G 4 HOH A 199 1299 190 HOH HOH . G 4 HOH A 200 1300 161 HOH HOH . G 4 HOH A 201 1301 118 HOH HOH . G 4 HOH A 202 1302 199 HOH HOH . G 4 HOH A 203 1303 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UGV . . . B 2 6.643 0.857 17.395 0.6 45.19 ? N1 UGV 1001 A 1 HETATM 2 C C4 UGV . . . B 2 8.856 -1.352 22.397 0.6 48.58 ? C4 UGV 1001 A 1 HETATM 3 C C5 UGV . . . B 2 8.452 -0.389 21.302 0.6 47.81 ? C5 UGV 1001 A 1 HETATM 4 C C6 UGV . . . B 2 6.651 0.039 19.658 0.6 46.11 ? C6 UGV 1001 A 1 HETATM 5 C C7 UGV . . . B 2 5.403 0.616 19.873 0.6 45.9 ? C7 UGV 1001 A 1 HETATM 6 C C8 UGV . . . B 2 4.79 1.313 18.845 0.6 45.59 ? C8 UGV 1001 A 1 HETATM 7 C C10 UGV . . . B 2 7.23 0.197 18.4 0.6 45.48 ? C10 UGV 1001 A 1 HETATM 8 O O UGV . . . B 2 9.132 0.602 21.037 0.6 47.67 ? O UGV 1001 A 1 HETATM 9 C C3 UGV . . . B 2 10.04 -0.703 23.049 0.6 49.43 ? C3 UGV 1001 A 1 HETATM 10 C C2 UGV . . . B 2 10.046 0.035 24.213 0.6 49.59 ? C2 UGV 1001 A 1 HETATM 11 C C1 UGV . . . B 2 11.306 0.556 24.54 0.6 50.01 ? C1 UGV 1001 A 1 HETATM 12 S S UGV . . . B 2 11.623 -0.771 22.359 0.6 50.18 ? S UGV 1001 A 1 HETATM 13 C C UGV . . . B 2 12.241 0.199 23.632 0.6 50.75 ? C UGV 1001 A 1 HETATM 14 CL CL UGV . . . B 2 13.907 0.605 23.658 0.6 52.12 ? CL UGV 1001 A 1 HETATM 15 N N UGV . . . B 2 7.299 -0.699 20.671 0.6 46.98 ? N UGV 1001 A 1 HETATM 16 C C9 UGV . . . B 2 5.442 1.399 17.629 0.6 45.27 ? C9 UGV 1001 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #