data_5RH5 # _model_server_result.job_id i6FFBDzQ73k-lG9NjaO8Uw _model_server_result.datetime_utc '2024-11-08 16:55:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rh5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 5RH5 # _exptl.entry_id 5RH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.95 _cell.angle_gamma 90 _cell.entry_id 5RH5 _cell.length_a 112.37 _cell.length_b 52.92 _cell.length_c 44.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id UHV _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id UHV _struct_conn.ptnr2_auth_seq_id 1001 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.775 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5RH5 _atom_sites.fract_transf_matrix[1][1] 0.008899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002046 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UHV A 1 1001 1001 UHV LIG . C 3 DMS A 1 1002 1002 DMS DMS . D 3 DMS A 1 1003 1003 DMS DMS . E 3 DMS A 1 1004 1004 DMS DMS . F 3 DMS A 1 1005 1006 DMS DMS . G 4 HOH A 1 1101 91 HOH HOH . G 4 HOH A 2 1102 253 HOH HOH . G 4 HOH A 3 1103 33 HOH HOH . G 4 HOH A 4 1104 258 HOH HOH . G 4 HOH A 5 1105 193 HOH HOH . G 4 HOH A 6 1106 63 HOH HOH . G 4 HOH A 7 1107 198 HOH HOH . G 4 HOH A 8 1108 88 HOH HOH . G 4 HOH A 9 1109 12 HOH HOH . G 4 HOH A 10 1110 28 HOH HOH . G 4 HOH A 11 1111 264 HOH HOH . G 4 HOH A 12 1112 34 HOH HOH . G 4 HOH A 13 1113 82 HOH HOH . G 4 HOH A 14 1114 9 HOH HOH . G 4 HOH A 15 1115 1 HOH HOH . G 4 HOH A 16 1116 93 HOH HOH . G 4 HOH A 17 1117 51 HOH HOH . G 4 HOH A 18 1118 70 HOH HOH . G 4 HOH A 19 1119 103 HOH HOH . G 4 HOH A 20 1120 117 HOH HOH . G 4 HOH A 21 1121 235 HOH HOH . G 4 HOH A 22 1122 37 HOH HOH . G 4 HOH A 23 1123 42 HOH HOH . G 4 HOH A 24 1124 45 HOH HOH . G 4 HOH A 25 1125 178 HOH HOH . G 4 HOH A 26 1126 128 HOH HOH . G 4 HOH A 27 1127 3 HOH HOH . G 4 HOH A 28 1128 98 HOH HOH . G 4 HOH A 29 1129 60 HOH HOH . G 4 HOH A 30 1130 73 HOH HOH . G 4 HOH A 31 1131 41 HOH HOH . G 4 HOH A 32 1132 208 HOH HOH . G 4 HOH A 33 1133 52 HOH HOH . G 4 HOH A 34 1134 64 HOH HOH . G 4 HOH A 35 1135 120 HOH HOH . G 4 HOH A 36 1136 230 HOH HOH . G 4 HOH A 37 1137 74 HOH HOH . G 4 HOH A 38 1138 112 HOH HOH . G 4 HOH A 39 1139 207 HOH HOH . G 4 HOH A 40 1140 104 HOH HOH . G 4 HOH A 41 1141 66 HOH HOH . G 4 HOH A 42 1142 126 HOH HOH . G 4 HOH A 43 1143 130 HOH HOH . G 4 HOH A 44 1144 24 HOH HOH . G 4 HOH A 45 1145 53 HOH HOH . G 4 HOH A 46 1146 78 HOH HOH . G 4 HOH A 47 1147 262 HOH HOH . G 4 HOH A 48 1148 96 HOH HOH . G 4 HOH A 49 1149 164 HOH HOH . G 4 HOH A 50 1150 59 HOH HOH . G 4 HOH A 51 1151 221 HOH HOH . G 4 HOH A 52 1152 39 HOH HOH . G 4 HOH A 53 1153 256 HOH HOH . G 4 HOH A 54 1154 159 HOH HOH . G 4 HOH A 55 1155 131 HOH HOH . G 4 HOH A 56 1156 142 HOH HOH . G 4 HOH A 57 1157 62 HOH HOH . G 4 HOH A 58 1158 236 HOH HOH . G 4 HOH A 59 1159 132 HOH HOH . G 4 HOH A 60 1160 26 HOH HOH . G 4 HOH A 61 1161 251 HOH HOH . G 4 HOH A 62 1162 6 HOH HOH . G 4 HOH A 63 1163 244 HOH HOH . G 4 HOH A 64 1164 29 HOH HOH . G 4 HOH A 65 1165 27 HOH HOH . G 4 HOH A 66 1166 65 HOH HOH . G 4 HOH A 67 1167 81 HOH HOH . G 4 HOH A 68 1168 10 HOH HOH . G 4 HOH A 69 1169 97 HOH HOH . G 4 HOH A 70 1170 195 HOH HOH . G 4 HOH A 71 1171 20 HOH HOH . G 4 HOH A 72 1172 32 HOH HOH . G 4 HOH A 73 1173 40 HOH HOH . G 4 HOH A 74 1174 266 HOH HOH . G 4 HOH A 75 1175 190 HOH HOH . G 4 HOH A 76 1176 55 HOH HOH . G 4 HOH A 77 1177 30 HOH HOH . G 4 HOH A 78 1178 7 HOH HOH . G 4 HOH A 79 1179 35 HOH HOH . G 4 HOH A 80 1180 136 HOH HOH . G 4 HOH A 81 1181 106 HOH HOH . G 4 HOH A 82 1182 125 HOH HOH . G 4 HOH A 83 1183 4 HOH HOH . G 4 HOH A 84 1184 50 HOH HOH . G 4 HOH A 85 1185 76 HOH HOH . G 4 HOH A 86 1186 17 HOH HOH . G 4 HOH A 87 1187 15 HOH HOH . G 4 HOH A 88 1188 25 HOH HOH . G 4 HOH A 89 1189 5 HOH HOH . G 4 HOH A 90 1190 133 HOH HOH . G 4 HOH A 91 1191 84 HOH HOH . G 4 HOH A 92 1192 75 HOH HOH . G 4 HOH A 93 1193 87 HOH HOH . G 4 HOH A 94 1194 11 HOH HOH . G 4 HOH A 95 1195 80 HOH HOH . G 4 HOH A 96 1196 61 HOH HOH . G 4 HOH A 97 1197 135 HOH HOH . G 4 HOH A 98 1198 213 HOH HOH . G 4 HOH A 99 1199 79 HOH HOH . G 4 HOH A 100 1200 18 HOH HOH . G 4 HOH A 101 1201 68 HOH HOH . G 4 HOH A 102 1202 168 HOH HOH . G 4 HOH A 103 1203 153 HOH HOH . G 4 HOH A 104 1204 21 HOH HOH . G 4 HOH A 105 1205 83 HOH HOH . G 4 HOH A 106 1206 144 HOH HOH . G 4 HOH A 107 1207 89 HOH HOH . G 4 HOH A 108 1208 202 HOH HOH . G 4 HOH A 109 1209 234 HOH HOH . G 4 HOH A 110 1210 105 HOH HOH . G 4 HOH A 111 1211 58 HOH HOH . G 4 HOH A 112 1212 179 HOH HOH . G 4 HOH A 113 1213 247 HOH HOH . G 4 HOH A 114 1214 260 HOH HOH . G 4 HOH A 115 1215 57 HOH HOH . G 4 HOH A 116 1216 199 HOH HOH . G 4 HOH A 117 1217 162 HOH HOH . G 4 HOH A 118 1218 36 HOH HOH . G 4 HOH A 119 1219 200 HOH HOH . G 4 HOH A 120 1220 19 HOH HOH . G 4 HOH A 121 1221 212 HOH HOH . G 4 HOH A 122 1222 8 HOH HOH . G 4 HOH A 123 1223 2 HOH HOH . G 4 HOH A 124 1224 111 HOH HOH . G 4 HOH A 125 1225 14 HOH HOH . G 4 HOH A 126 1226 149 HOH HOH . G 4 HOH A 127 1227 56 HOH HOH . G 4 HOH A 128 1228 123 HOH HOH . G 4 HOH A 129 1229 259 HOH HOH . G 4 HOH A 130 1230 94 HOH HOH . G 4 HOH A 131 1231 220 HOH HOH . G 4 HOH A 132 1232 223 HOH HOH . G 4 HOH A 133 1233 102 HOH HOH . G 4 HOH A 134 1234 240 HOH HOH . G 4 HOH A 135 1235 54 HOH HOH . G 4 HOH A 136 1236 101 HOH HOH . G 4 HOH A 137 1237 113 HOH HOH . G 4 HOH A 138 1238 90 HOH HOH . G 4 HOH A 139 1239 69 HOH HOH . G 4 HOH A 140 1240 72 HOH HOH . G 4 HOH A 141 1241 166 HOH HOH . G 4 HOH A 142 1242 196 HOH HOH . G 4 HOH A 143 1243 211 HOH HOH . G 4 HOH A 144 1244 215 HOH HOH . G 4 HOH A 145 1245 138 HOH HOH . G 4 HOH A 146 1246 155 HOH HOH . G 4 HOH A 147 1247 124 HOH HOH . G 4 HOH A 148 1248 121 HOH HOH . G 4 HOH A 149 1249 109 HOH HOH . G 4 HOH A 150 1250 249 HOH HOH . G 4 HOH A 151 1251 13 HOH HOH . G 4 HOH A 152 1252 255 HOH HOH . G 4 HOH A 153 1253 229 HOH HOH . G 4 HOH A 154 1254 167 HOH HOH . G 4 HOH A 155 1255 100 HOH HOH . G 4 HOH A 156 1256 49 HOH HOH . G 4 HOH A 157 1257 22 HOH HOH . G 4 HOH A 158 1258 95 HOH HOH . G 4 HOH A 159 1259 146 HOH HOH . G 4 HOH A 160 1260 165 HOH HOH . G 4 HOH A 161 1261 239 HOH HOH . G 4 HOH A 162 1262 243 HOH HOH . G 4 HOH A 163 1263 261 HOH HOH . G 4 HOH A 164 1264 23 HOH HOH . G 4 HOH A 165 1265 194 HOH HOH . G 4 HOH A 166 1266 48 HOH HOH . G 4 HOH A 167 1267 44 HOH HOH . G 4 HOH A 168 1268 182 HOH HOH . G 4 HOH A 169 1269 137 HOH HOH . G 4 HOH A 170 1270 31 HOH HOH . G 4 HOH A 171 1271 116 HOH HOH . G 4 HOH A 172 1272 227 HOH HOH . G 4 HOH A 173 1273 219 HOH HOH . G 4 HOH A 174 1274 77 HOH HOH . G 4 HOH A 175 1275 242 HOH HOH . G 4 HOH A 176 1276 231 HOH HOH . G 4 HOH A 177 1277 110 HOH HOH . G 4 HOH A 178 1278 114 HOH HOH . G 4 HOH A 179 1279 170 HOH HOH . G 4 HOH A 180 1280 176 HOH HOH . G 4 HOH A 181 1281 218 HOH HOH . G 4 HOH A 182 1282 118 HOH HOH . G 4 HOH A 183 1283 171 HOH HOH . G 4 HOH A 184 1284 86 HOH HOH . G 4 HOH A 185 1285 180 HOH HOH . G 4 HOH A 186 1286 226 HOH HOH . G 4 HOH A 187 1287 175 HOH HOH . G 4 HOH A 188 1288 216 HOH HOH . G 4 HOH A 189 1289 205 HOH HOH . G 4 HOH A 190 1290 43 HOH HOH . G 4 HOH A 191 1291 161 HOH HOH . G 4 HOH A 192 1292 157 HOH HOH . G 4 HOH A 193 1293 16 HOH HOH . G 4 HOH A 194 1294 186 HOH HOH . G 4 HOH A 195 1295 47 HOH HOH . G 4 HOH A 196 1296 263 HOH HOH . G 4 HOH A 197 1297 187 HOH HOH . G 4 HOH A 198 1298 204 HOH HOH . G 4 HOH A 199 1299 169 HOH HOH . G 4 HOH A 200 1300 238 HOH HOH . G 4 HOH A 201 1301 225 HOH HOH . G 4 HOH A 202 1302 177 HOH HOH . G 4 HOH A 203 1303 185 HOH HOH . G 4 HOH A 204 1304 233 HOH HOH . G 4 HOH A 205 1305 201 HOH HOH . G 4 HOH A 206 1306 158 HOH HOH . G 4 HOH A 207 1307 71 HOH HOH . G 4 HOH A 208 1308 156 HOH HOH . G 4 HOH A 209 1309 163 HOH HOH . G 4 HOH A 210 1310 174 HOH HOH . G 4 HOH A 211 1311 246 HOH HOH . G 4 HOH A 212 1312 147 HOH HOH . G 4 HOH A 213 1313 140 HOH HOH . G 4 HOH A 214 1314 150 HOH HOH . G 4 HOH A 215 1315 129 HOH HOH . G 4 HOH A 216 1316 134 HOH HOH . G 4 HOH A 217 1317 173 HOH HOH . G 4 HOH A 218 1318 224 HOH HOH . G 4 HOH A 219 1319 152 HOH HOH . G 4 HOH A 220 1320 107 HOH HOH . G 4 HOH A 221 1321 139 HOH HOH . G 4 HOH A 222 1322 237 HOH HOH . G 4 HOH A 223 1323 203 HOH HOH . G 4 HOH A 224 1324 197 HOH HOH . G 4 HOH A 225 1325 122 HOH HOH . G 4 HOH A 226 1326 188 HOH HOH . G 4 HOH A 227 1327 145 HOH HOH . G 4 HOH A 228 1328 241 HOH HOH . G 4 HOH A 229 1329 189 HOH HOH . G 4 HOH A 230 1330 250 HOH HOH . G 4 HOH A 231 1331 206 HOH HOH . G 4 HOH A 232 1332 99 HOH HOH . G 4 HOH A 233 1333 248 HOH HOH . G 4 HOH A 234 1334 184 HOH HOH . G 4 HOH A 235 1335 85 HOH HOH . G 4 HOH A 236 1336 151 HOH HOH . G 4 HOH A 237 1337 154 HOH HOH . G 4 HOH A 238 1338 172 HOH HOH . G 4 HOH A 239 1339 46 HOH HOH . G 4 HOH A 240 1340 108 HOH HOH . G 4 HOH A 241 1341 257 HOH HOH . G 4 HOH A 242 1342 252 HOH HOH . G 4 HOH A 243 1343 148 HOH HOH . G 4 HOH A 244 1344 143 HOH HOH . G 4 HOH A 245 1345 38 HOH HOH . G 4 HOH A 246 1346 210 HOH HOH . G 4 HOH A 247 1347 115 HOH HOH . G 4 HOH A 248 1348 127 HOH HOH . G 4 HOH A 249 1349 222 HOH HOH . G 4 HOH A 250 1350 119 HOH HOH . G 4 HOH A 251 1351 254 HOH HOH . G 4 HOH A 252 1352 67 HOH HOH . G 4 HOH A 253 1353 245 HOH HOH . G 4 HOH A 254 1354 181 HOH HOH . G 4 HOH A 255 1355 192 HOH HOH . G 4 HOH A 256 1356 160 HOH HOH . G 4 HOH A 257 1357 265 HOH HOH . G 4 HOH A 258 1358 92 HOH HOH . G 4 HOH A 259 1359 214 HOH HOH . G 4 HOH A 260 1360 191 HOH HOH . G 4 HOH A 261 1361 232 HOH HOH . G 4 HOH A 262 1362 209 HOH HOH . G 4 HOH A 263 1363 228 HOH HOH . G 4 HOH A 264 1364 217 HOH HOH . G 4 HOH A 265 1365 141 HOH HOH . G 4 HOH A 266 1366 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 7.049 -28.127 21.387 1 34.08 ? S DMS 1002 A 1 HETATM 2 O O DMS . . . C 3 7.683 -27.097 22.183 1 34.02 ? O DMS 1002 A 1 HETATM 3 C C1 DMS . . . C 3 5.785 -28.784 22.436 1 33.92 ? C1 DMS 1002 A 1 HETATM 4 C C2 DMS . . . C 3 6.056 -27.286 20.199 1 34.07 ? C2 DMS 1002 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 30 _model_server_stats.element_count 4 #