data_5RHN # _model_server_result.job_id u8_MrHWUfV9Eua1jmRpQXg _model_server_result.datetime_utc '2024-11-15 13:10:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rhn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5RHN # _exptl.entry_id 5RHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.117 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "8-BROMO-ADENOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5RHN _cell.length_a 40.32 _cell.length_b 40.32 _cell.length_c 143.08 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 143.08 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 Br N5 O7 P' _chem_comp.formula_weight 426.117 _chem_comp.id 8BR _chem_comp.mon_nstd_flag . _chem_comp.name "8-BROMO-ADENOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 8BR doub 1 n n P O2P 8BR sing 2 n n P O3P 8BR sing 3 n n P O5' 8BR sing 4 n n O2P HOP2 8BR sing 5 n n O3P HOP3 8BR sing 6 n n O5' C5' 8BR sing 7 n n C5' C4' 8BR sing 8 n n C5' "H5'1" 8BR sing 9 n n C5' "H5'2" 8BR sing 10 n n C4' O4' 8BR sing 11 n n C4' C3' 8BR sing 12 n n C4' H4' 8BR sing 13 n n O4' C1' 8BR sing 14 n n C3' O3' 8BR sing 15 n n C3' C2' 8BR sing 16 n n C3' H3' 8BR sing 17 n n O3' HO3' 8BR sing 18 n n C2' O2' 8BR sing 19 n n C2' C1' 8BR sing 20 n n C2' H2' 8BR sing 21 n n O2' HO2' 8BR sing 22 n n C1' N9 8BR sing 23 n n C1' H1' 8BR sing 24 n n N9 C8 8BR sing 25 n y N9 C4 8BR sing 26 n y C8 BR8 8BR sing 27 n n C8 N7 8BR doub 28 n y N7 C5 8BR sing 29 n y C5 C6 8BR sing 30 n y C5 C4 8BR doub 31 n y C6 N6 8BR sing 32 n n C6 N1 8BR doub 33 n y N6 HN61 8BR sing 34 n n N6 HN62 8BR sing 35 n n N1 C2 8BR sing 36 n y C2 N3 8BR doub 37 n y C2 H2 8BR sing 38 n n N3 C4 8BR sing 39 n y # _atom_sites.entry_id 5RHN _atom_sites.fract_transf_matrix[1][1] 0.024802 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8BR A 1 201 201 8BR 8BR . C 3 HOH A 1 211 211 HOH HOH . C 3 HOH A 2 212 212 HOH HOH . C 3 HOH A 3 213 213 HOH HOH . C 3 HOH A 4 214 214 HOH HOH . C 3 HOH A 5 215 215 HOH HOH . C 3 HOH A 6 216 216 HOH HOH . C 3 HOH A 7 217 217 HOH HOH . C 3 HOH A 8 218 218 HOH HOH . C 3 HOH A 9 219 219 HOH HOH . C 3 HOH A 10 220 220 HOH HOH . C 3 HOH A 11 221 221 HOH HOH . C 3 HOH A 12 222 222 HOH HOH . C 3 HOH A 13 223 223 HOH HOH . C 3 HOH A 14 224 224 HOH HOH . C 3 HOH A 15 225 225 HOH HOH . C 3 HOH A 16 226 226 HOH HOH . C 3 HOH A 17 227 227 HOH HOH . C 3 HOH A 18 228 228 HOH HOH . C 3 HOH A 19 229 229 HOH HOH . C 3 HOH A 20 230 230 HOH HOH . C 3 HOH A 21 231 231 HOH HOH . C 3 HOH A 22 232 232 HOH HOH . C 3 HOH A 23 233 233 HOH HOH . C 3 HOH A 24 234 234 HOH HOH . C 3 HOH A 25 235 235 HOH HOH . C 3 HOH A 26 236 236 HOH HOH . C 3 HOH A 27 237 237 HOH HOH . C 3 HOH A 28 238 238 HOH HOH . C 3 HOH A 29 239 239 HOH HOH . C 3 HOH A 30 240 240 HOH HOH . C 3 HOH A 31 241 241 HOH HOH . C 3 HOH A 32 242 242 HOH HOH . C 3 HOH A 33 243 243 HOH HOH . C 3 HOH A 34 244 244 HOH HOH . C 3 HOH A 35 245 245 HOH HOH . C 3 HOH A 36 246 246 HOH HOH . C 3 HOH A 37 247 247 HOH HOH . C 3 HOH A 38 248 248 HOH HOH . C 3 HOH A 39 249 249 HOH HOH . C 3 HOH A 40 250 250 HOH HOH . C 3 HOH A 41 251 251 HOH HOH . C 3 HOH A 42 252 252 HOH HOH . C 3 HOH A 43 253 253 HOH HOH . C 3 HOH A 44 254 254 HOH HOH . C 3 HOH A 45 255 255 HOH HOH . C 3 HOH A 46 256 256 HOH HOH . C 3 HOH A 47 257 257 HOH HOH . C 3 HOH A 48 258 258 HOH HOH . C 3 HOH A 49 259 259 HOH HOH . C 3 HOH A 50 260 260 HOH HOH . C 3 HOH A 51 261 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 8BR . . . B 2 11.602 6.898 60.933 1 42.62 ? P 8BR 201 A 1 HETATM 2 O O1P 8BR . . . B 2 10.589 5.781 60.815 1 43.93 ? O1P 8BR 201 A 1 HETATM 3 O O2P 8BR . . . B 2 12.817 6.817 60.042 1 38.15 ? O2P 8BR 201 A 1 HETATM 4 O O3P 8BR . . . B 2 11.861 7.412 62.316 1 40.86 ? O3P 8BR 201 A 1 HETATM 5 O O5' 8BR . . . B 2 10.784 8.131 60.288 1 40.28 ? O5' 8BR 201 A 1 HETATM 6 C C5' 8BR . . . B 2 10.437 8.096 58.866 1 28.55 ? C5' 8BR 201 A 1 HETATM 7 C C4' 8BR . . . B 2 9.253 9.005 58.668 1 22.31 ? C4' 8BR 201 A 1 HETATM 8 O O4' 8BR . . . B 2 9.363 9.746 57.411 1 16.05 ? O4' 8BR 201 A 1 HETATM 9 C C3' 8BR . . . B 2 7.874 8.278 58.593 1 16.18 ? C3' 8BR 201 A 1 HETATM 10 O O3' 8BR . . . B 2 6.968 8.815 59.617 1 12.71 ? O3' 8BR 201 A 1 HETATM 11 C C2' 8BR . . . B 2 7.324 8.607 57.19 1 15.55 ? C2' 8BR 201 A 1 HETATM 12 O O2' 8BR . . . B 2 5.936 8.709 57.084 1 16.68 ? O2' 8BR 201 A 1 HETATM 13 C C1' 8BR . . . B 2 8.087 9.902 56.897 1 16.41 ? C1' 8BR 201 A 1 HETATM 14 N N9 8BR . . . B 2 8.2 10.237 55.451 1 18.47 ? N9 8BR 201 A 1 HETATM 15 C C8 8BR . . . B 2 8.916 9.524 54.463 1 17.62 ? C8 8BR 201 A 1 HETATM 16 BR BR8 8BR . . . B 2 9.734 7.866 54.699 1 23.95 ? BR8 8BR 201 A 1 HETATM 17 N N7 8BR . . . B 2 8.971 10.184 53.3 1 17.99 ? N7 8BR 201 A 1 HETATM 18 C C5 8BR . . . B 2 8.351 11.352 53.568 1 19.64 ? C5 8BR 201 A 1 HETATM 19 C C6 8BR . . . B 2 8.043 12.424 52.751 1 18.19 ? C6 8BR 201 A 1 HETATM 20 N N6 8BR . . . B 2 8.358 12.441 51.438 1 20 ? N6 8BR 201 A 1 HETATM 21 N N1 8BR . . . B 2 7.384 13.469 53.285 1 21.2 ? N1 8BR 201 A 1 HETATM 22 C C2 8BR . . . B 2 6.947 13.444 54.6 1 18.62 ? C2 8BR 201 A 1 HETATM 23 N N3 8BR . . . B 2 7.377 12.578 55.464 1 18.75 ? N3 8BR 201 A 1 HETATM 24 C C4 8BR . . . B 2 7.922 11.455 54.94 1 17.13 ? C4 8BR 201 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #