data_5RJJ # _model_server_result.job_id SSMYgalOSaIe-CN4SmpMyA _model_server_result.datetime_utc '2024-11-13 10:43:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rjj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RJJ # _exptl.entry_id 5RJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.043 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-bromanyl-1,8-naphthyridine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.01 _cell.angle_gamma 90 _cell.entry_id 5RJJ _cell.length_a 81.754 _cell.length_b 27.312 _cell.length_c 56.019 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RJJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id CB _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 1335 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id BR1 _struct_conn.ptnr2_label_comp_id HH8 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HH8 _struct_conn.ptnr2_auth_seq_id 1502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.924 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H5 Br N2' _chem_comp.formula_weight 209.043 _chem_comp.id HH8 _chem_comp.mon_nstd_flag . _chem_comp.name 4-bromanyl-1,8-naphthyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5RJJ _atom_sites.fract_transf_matrix[1][1] 0.012232 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002159 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HH8 A 1 1501 1501 HH8 LIG . C 2 HH8 A 1 1502 1601 HH8 LIG . D 3 HOH A 1 1601 195 HOH HOH . D 3 HOH A 2 1602 62 HOH HOH . D 3 HOH A 3 1603 85 HOH HOH . D 3 HOH A 4 1604 151 HOH HOH . D 3 HOH A 5 1605 7 HOH HOH . D 3 HOH A 6 1606 89 HOH HOH . D 3 HOH A 7 1607 121 HOH HOH . D 3 HOH A 8 1608 197 HOH HOH . D 3 HOH A 9 1609 47 HOH HOH . D 3 HOH A 10 1610 31 HOH HOH . D 3 HOH A 11 1611 33 HOH HOH . D 3 HOH A 12 1612 57 HOH HOH . D 3 HOH A 13 1613 208 HOH HOH . D 3 HOH A 14 1614 183 HOH HOH . D 3 HOH A 15 1615 25 HOH HOH . D 3 HOH A 16 1616 17 HOH HOH . D 3 HOH A 17 1617 187 HOH HOH . D 3 HOH A 18 1618 171 HOH HOH . D 3 HOH A 19 1619 145 HOH HOH . D 3 HOH A 20 1620 124 HOH HOH . D 3 HOH A 21 1621 50 HOH HOH . D 3 HOH A 22 1622 1 HOH HOH . D 3 HOH A 23 1623 10 HOH HOH . D 3 HOH A 24 1624 141 HOH HOH . D 3 HOH A 25 1625 50 HOH HOH . D 3 HOH A 26 1626 135 HOH HOH . D 3 HOH A 27 1627 129 HOH HOH . D 3 HOH A 28 1628 98 HOH HOH . D 3 HOH A 29 1629 20 HOH HOH . D 3 HOH A 30 1630 101 HOH HOH . D 3 HOH A 31 1631 83 HOH HOH . D 3 HOH A 32 1632 25 HOH HOH . D 3 HOH A 33 1633 154 HOH HOH . D 3 HOH A 34 1634 182 HOH HOH . D 3 HOH A 35 1635 184 HOH HOH . D 3 HOH A 36 1636 54 HOH HOH . D 3 HOH A 37 1637 70 HOH HOH . D 3 HOH A 38 1638 76 HOH HOH . D 3 HOH A 39 1639 36 HOH HOH . D 3 HOH A 40 1640 24 HOH HOH . D 3 HOH A 41 1641 140 HOH HOH . D 3 HOH A 42 1642 7 HOH HOH . D 3 HOH A 43 1643 14 HOH HOH . D 3 HOH A 44 1644 77 HOH HOH . D 3 HOH A 45 1645 59 HOH HOH . D 3 HOH A 46 1646 74 HOH HOH . D 3 HOH A 47 1647 16 HOH HOH . D 3 HOH A 48 1648 94 HOH HOH . D 3 HOH A 49 1649 12 HOH HOH . D 3 HOH A 50 1650 138 HOH HOH . D 3 HOH A 51 1651 108 HOH HOH . D 3 HOH A 52 1652 75 HOH HOH . D 3 HOH A 53 1653 9 HOH HOH . D 3 HOH A 54 1654 26 HOH HOH . D 3 HOH A 55 1655 132 HOH HOH . D 3 HOH A 56 1656 180 HOH HOH . D 3 HOH A 57 1657 65 HOH HOH . D 3 HOH A 58 1658 31 HOH HOH . D 3 HOH A 59 1659 157 HOH HOH . D 3 HOH A 60 1660 4 HOH HOH . D 3 HOH A 61 1661 35 HOH HOH . D 3 HOH A 62 1662 1 HOH HOH . D 3 HOH A 63 1663 177 HOH HOH . D 3 HOH A 64 1664 130 HOH HOH . D 3 HOH A 65 1665 3 HOH HOH . D 3 HOH A 66 1666 139 HOH HOH . D 3 HOH A 67 1667 11 HOH HOH . D 3 HOH A 68 1668 39 HOH HOH . D 3 HOH A 69 1669 66 HOH HOH . D 3 HOH A 70 1670 58 HOH HOH . D 3 HOH A 71 1671 82 HOH HOH . D 3 HOH A 72 1672 122 HOH HOH . D 3 HOH A 73 1673 159 HOH HOH . D 3 HOH A 74 1674 142 HOH HOH . D 3 HOH A 75 1675 5 HOH HOH . D 3 HOH A 76 1676 56 HOH HOH . D 3 HOH A 77 1677 119 HOH HOH . D 3 HOH A 78 1678 64 HOH HOH . D 3 HOH A 79 1679 45 HOH HOH . D 3 HOH A 80 1680 43 HOH HOH . D 3 HOH A 81 1681 21 HOH HOH . D 3 HOH A 82 1682 167 HOH HOH . D 3 HOH A 83 1683 120 HOH HOH . D 3 HOH A 84 1684 28 HOH HOH . D 3 HOH A 85 1685 137 HOH HOH . D 3 HOH A 86 1686 6 HOH HOH . D 3 HOH A 87 1687 69 HOH HOH . D 3 HOH A 88 1688 160 HOH HOH . D 3 HOH A 89 1689 146 HOH HOH . D 3 HOH A 90 1690 55 HOH HOH . D 3 HOH A 91 1691 178 HOH HOH . D 3 HOH A 92 1692 29 HOH HOH . D 3 HOH A 93 1693 127 HOH HOH . D 3 HOH A 94 1694 40 HOH HOH . D 3 HOH A 95 1695 52 HOH HOH . D 3 HOH A 96 1696 27 HOH HOH . D 3 HOH A 97 1697 71 HOH HOH . D 3 HOH A 98 1698 44 HOH HOH . D 3 HOH A 99 1699 60 HOH HOH . D 3 HOH A 100 1700 176 HOH HOH . D 3 HOH A 101 1701 174 HOH HOH . D 3 HOH A 102 1702 48 HOH HOH . D 3 HOH A 103 1703 128 HOH HOH . D 3 HOH A 104 1704 92 HOH HOH . D 3 HOH A 105 1705 58 HOH HOH . D 3 HOH A 106 1706 113 HOH HOH . D 3 HOH A 107 1707 27 HOH HOH . D 3 HOH A 108 1708 91 HOH HOH . D 3 HOH A 109 1709 28 HOH HOH . D 3 HOH A 110 1710 48 HOH HOH . D 3 HOH A 111 1711 37 HOH HOH . D 3 HOH A 112 1712 181 HOH HOH . D 3 HOH A 113 1713 153 HOH HOH . D 3 HOH A 114 1714 42 HOH HOH . D 3 HOH A 115 1715 23 HOH HOH . D 3 HOH A 116 1716 109 HOH HOH . D 3 HOH A 117 1717 191 HOH HOH . D 3 HOH A 118 1718 86 HOH HOH . D 3 HOH A 119 1719 63 HOH HOH . D 3 HOH A 120 1720 123 HOH HOH . D 3 HOH A 121 1721 134 HOH HOH . D 3 HOH A 122 1722 161 HOH HOH . D 3 HOH A 123 1723 32 HOH HOH . D 3 HOH A 124 1724 136 HOH HOH . D 3 HOH A 125 1725 194 HOH HOH . D 3 HOH A 126 1726 2 HOH HOH . D 3 HOH A 127 1727 96 HOH HOH . D 3 HOH A 128 1728 80 HOH HOH . D 3 HOH A 129 1729 19 HOH HOH . D 3 HOH A 130 1730 11 HOH HOH . D 3 HOH A 131 1731 105 HOH HOH . D 3 HOH A 132 1732 15 HOH HOH . D 3 HOH A 133 1733 47 HOH HOH . D 3 HOH A 134 1734 67 HOH HOH . D 3 HOH A 135 1735 46 HOH HOH . D 3 HOH A 136 1736 116 HOH HOH . D 3 HOH A 137 1737 38 HOH HOH . D 3 HOH A 138 1738 125 HOH HOH . D 3 HOH A 139 1739 84 HOH HOH . D 3 HOH A 140 1740 54 HOH HOH . D 3 HOH A 141 1741 53 HOH HOH . D 3 HOH A 142 1742 72 HOH HOH . D 3 HOH A 143 1743 165 HOH HOH . D 3 HOH A 144 1744 49 HOH HOH . D 3 HOH A 145 1745 18 HOH HOH . D 3 HOH A 146 1746 24 HOH HOH . D 3 HOH A 147 1747 158 HOH HOH . D 3 HOH A 148 1748 34 HOH HOH . D 3 HOH A 149 1749 22 HOH HOH . D 3 HOH A 150 1750 117 HOH HOH . D 3 HOH A 151 1751 55 HOH HOH . D 3 HOH A 152 1752 57 HOH HOH . D 3 HOH A 153 1753 81 HOH HOH . D 3 HOH A 154 1754 164 HOH HOH . D 3 HOH A 155 1755 90 HOH HOH . D 3 HOH A 156 1756 172 HOH HOH . D 3 HOH A 157 1757 118 HOH HOH . D 3 HOH A 158 1758 33 HOH HOH . D 3 HOH A 159 1759 6 HOH HOH . D 3 HOH A 160 1760 13 HOH HOH . D 3 HOH A 161 1761 95 HOH HOH . D 3 HOH A 162 1762 166 HOH HOH . D 3 HOH A 163 1763 21 HOH HOH . D 3 HOH A 164 1764 104 HOH HOH . D 3 HOH A 165 1765 45 HOH HOH . D 3 HOH A 166 1766 173 HOH HOH . D 3 HOH A 167 1767 16 HOH HOH . D 3 HOH A 168 1768 131 HOH HOH . D 3 HOH A 169 1769 40 HOH HOH . D 3 HOH A 170 1770 133 HOH HOH . D 3 HOH A 171 1771 126 HOH HOH . D 3 HOH A 172 1772 35 HOH HOH . D 3 HOH A 173 1773 18 HOH HOH . D 3 HOH A 174 1774 4 HOH HOH . D 3 HOH A 175 1775 175 HOH HOH . D 3 HOH A 176 1776 93 HOH HOH . D 3 HOH A 177 1777 150 HOH HOH . D 3 HOH A 178 1778 205 HOH HOH . D 3 HOH A 179 1779 39 HOH HOH . D 3 HOH A 180 1780 115 HOH HOH . D 3 HOH A 181 1781 12 HOH HOH . D 3 HOH A 182 1782 38 HOH HOH . D 3 HOH A 183 1783 199 HOH HOH . D 3 HOH A 184 1784 185 HOH HOH . D 3 HOH A 185 1785 8 HOH HOH . D 3 HOH A 186 1786 114 HOH HOH . D 3 HOH A 187 1787 59 HOH HOH . D 3 HOH A 188 1788 107 HOH HOH . D 3 HOH A 189 1789 30 HOH HOH . D 3 HOH A 190 1790 52 HOH HOH . D 3 HOH A 191 1791 5 HOH HOH . D 3 HOH A 192 1792 149 HOH HOH . D 3 HOH A 193 1793 61 HOH HOH . D 3 HOH A 194 1794 198 HOH HOH . D 3 HOH A 195 1795 34 HOH HOH . D 3 HOH A 196 1796 26 HOH HOH . D 3 HOH A 197 1797 156 HOH HOH . D 3 HOH A 198 1798 22 HOH HOH . D 3 HOH A 199 1799 44 HOH HOH . D 3 HOH A 200 1800 112 HOH HOH . D 3 HOH A 201 1801 170 HOH HOH . D 3 HOH A 202 1802 43 HOH HOH . D 3 HOH A 203 1803 8 HOH HOH . D 3 HOH A 204 1804 193 HOH HOH . D 3 HOH A 205 1805 51 HOH HOH . D 3 HOH A 206 1806 190 HOH HOH . D 3 HOH A 207 1807 2 HOH HOH . D 3 HOH A 208 1808 188 HOH HOH . D 3 HOH A 209 1809 186 HOH HOH . D 3 HOH A 210 1810 41 HOH HOH . D 3 HOH A 211 1811 49 HOH HOH . D 3 HOH A 212 1812 30 HOH HOH . D 3 HOH A 213 1813 46 HOH HOH . D 3 HOH A 214 1814 102 HOH HOH . D 3 HOH A 215 1815 110 HOH HOH . D 3 HOH A 216 1816 201 HOH HOH . D 3 HOH A 217 1817 68 HOH HOH . D 3 HOH A 218 1818 73 HOH HOH . D 3 HOH A 219 1819 3 HOH HOH . D 3 HOH A 220 1820 13 HOH HOH . D 3 HOH A 221 1821 32 HOH HOH . D 3 HOH A 222 1822 20 HOH HOH . D 3 HOH A 223 1823 78 HOH HOH . D 3 HOH A 224 1824 15 HOH HOH . D 3 HOH A 225 1825 103 HOH HOH . D 3 HOH A 226 1826 60 HOH HOH . D 3 HOH A 227 1827 56 HOH HOH . D 3 HOH A 228 1828 29 HOH HOH . D 3 HOH A 229 1829 17 HOH HOH . D 3 HOH A 230 1830 168 HOH HOH . D 3 HOH A 231 1831 9 HOH HOH . D 3 HOH A 232 1832 207 HOH HOH . D 3 HOH A 233 1833 200 HOH HOH . D 3 HOH A 234 1834 148 HOH HOH . D 3 HOH A 235 1835 169 HOH HOH . D 3 HOH A 236 1836 196 HOH HOH . D 3 HOH A 237 1837 37 HOH HOH . D 3 HOH A 238 1838 23 HOH HOH . D 3 HOH A 239 1839 42 HOH HOH . D 3 HOH A 240 1840 111 HOH HOH . D 3 HOH A 241 1841 14 HOH HOH . D 3 HOH A 242 1842 51 HOH HOH . D 3 HOH A 243 1843 36 HOH HOH . D 3 HOH A 244 1844 189 HOH HOH . D 3 HOH A 245 1845 87 HOH HOH . D 3 HOH A 246 1846 10 HOH HOH . D 3 HOH A 247 1847 192 HOH HOH . D 3 HOH A 248 1848 53 HOH HOH . D 3 HOH A 249 1849 97 HOH HOH . D 3 HOH A 250 1850 203 HOH HOH . D 3 HOH A 251 1851 79 HOH HOH . D 3 HOH A 252 1852 41 HOH HOH . D 3 HOH A 253 1853 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 HH8 . . . B 2 -20.776 12.574 25.611 0.59 11.56 ? C4 HH8 1501 A 1 HETATM 2 C C5 HH8 . . . B 2 -18.698 13.529 26.059 0.59 13.32 ? C5 HH8 1501 A 1 HETATM 3 C C6 HH8 . . . B 2 -19.171 14.104 27.289 0.59 13.28 ? C6 HH8 1501 A 1 HETATM 4 C C7 HH8 . . . B 2 -20.476 13.883 27.651 0.59 12.78 ? C7 HH8 1501 A 1 HETATM 5 C C8 HH8 . . . B 2 -21.313 13.106 26.8 0.59 11.94 ? C8 HH8 1501 A 1 HETATM 6 N N1 HH8 . . . B 2 -21.537 11.824 24.697 0.59 10.48 ? N1 HH8 1501 A 1 HETATM 7 N N2 HH8 . . . B 2 -19.448 12.773 25.252 0.59 12.38 ? N2 HH8 1501 A 1 HETATM 8 C C3 HH8 . . . B 2 -22.795 11.625 24.992 0.59 11.02 ? C3 HH8 1501 A 1 HETATM 9 BR BR1 HH8 . . . B 2 -23.498 13.338 28.667 0.59 17.51 ? BR1 HH8 1501 A 1 HETATM 10 C C1 HH8 . . . B 2 -22.672 12.805 27.033 0.59 13.02 ? C1 HH8 1501 A 1 HETATM 11 C C2 HH8 . . . B 2 -23.434 12.102 26.169 0.59 11.96 ? C2 HH8 1501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 11 #