data_5RK3 # _model_server_result.job_id DI0e4VZlteUAREcVYwl6HA _model_server_result.datetime_utc '2024-10-19 22:33:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RK3 # _exptl.entry_id 5RK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 138.167 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-amino-1,6-dimethylpyridin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.33 _cell.angle_gamma 90 _cell.entry_id 5RK3 _cell.length_a 81.886 _cell.length_b 27.135 _cell.length_c 55.912 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H10 N2 O' _chem_comp.formula_weight 138.167 _chem_comp.id UVV _chem_comp.mon_nstd_flag . _chem_comp.name 3-amino-1,6-dimethylpyridin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C5 UVV doub 358 n n N C4 UVV sing 359 n n C5 C4 UVV sing 360 n n C5 N1 UVV sing 361 n n C6 N1 UVV sing 362 n n C4 C3 UVV doub 363 n n N1 C1 UVV sing 364 n n C3 C2 UVV sing 365 n n C1 C2 UVV doub 366 n n C1 C UVV sing 367 n n C6 H1 UVV sing 368 n n C6 H2 UVV sing 369 n n C6 H3 UVV sing 370 n n N H4 UVV sing 371 n n N H5 UVV sing 372 n n C H6 UVV sing 373 n n C H7 UVV sing 374 n n C H8 UVV sing 375 n n C2 H9 UVV sing 376 n n C3 H10 UVV sing 377 n n # _atom_sites.entry_id 5RK3 _atom_sites.fract_transf_matrix[1][1] 0.012212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002226 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UVV A 1 1501 1501 UVV LIG . C 3 HOH A 1 1601 195 HOH HOH . C 3 HOH A 2 1602 7 HOH HOH . C 3 HOH A 3 1603 89 HOH HOH . C 3 HOH A 4 1604 141 HOH HOH . C 3 HOH A 5 1605 85 HOH HOH . C 3 HOH A 6 1606 183 HOH HOH . C 3 HOH A 7 1607 47 HOH HOH . C 3 HOH A 8 1608 17 HOH HOH . C 3 HOH A 9 1609 98 HOH HOH . C 3 HOH A 10 1610 151 HOH HOH . C 3 HOH A 11 1611 140 HOH HOH . C 3 HOH A 12 1612 33 HOH HOH . C 3 HOH A 13 1613 197 HOH HOH . C 3 HOH A 14 1614 121 HOH HOH . C 3 HOH A 15 1615 1 HOH HOH . C 3 HOH A 16 1616 187 HOH HOH . C 3 HOH A 17 1617 7 HOH HOH . C 3 HOH A 18 1618 176 HOH HOH . C 3 HOH A 19 1619 160 HOH HOH . C 3 HOH A 20 1620 20 HOH HOH . C 3 HOH A 21 1621 50 HOH HOH . C 3 HOH A 22 1622 65 HOH HOH . C 3 HOH A 23 1623 124 HOH HOH . C 3 HOH A 24 1624 10 HOH HOH . C 3 HOH A 25 1625 12 HOH HOH . C 3 HOH A 26 1626 74 HOH HOH . C 3 HOH A 27 1627 25 HOH HOH . C 3 HOH A 28 1628 9 HOH HOH . C 3 HOH A 29 1629 62 HOH HOH . C 3 HOH A 30 1630 171 HOH HOH . C 3 HOH A 31 1631 101 HOH HOH . C 3 HOH A 32 1632 66 HOH HOH . C 3 HOH A 33 1633 184 HOH HOH . C 3 HOH A 34 1634 84 HOH HOH . C 3 HOH A 35 1635 144 HOH HOH . C 3 HOH A 36 1636 162 HOH HOH . C 3 HOH A 37 1637 1 HOH HOH . C 3 HOH A 38 1638 179 HOH HOH . C 3 HOH A 39 1639 172 HOH HOH . C 3 HOH A 40 1640 4 HOH HOH . C 3 HOH A 41 1641 83 HOH HOH . C 3 HOH A 42 1642 64 HOH HOH . C 3 HOH A 43 1643 75 HOH HOH . C 3 HOH A 44 1644 123 HOH HOH . C 3 HOH A 45 1645 92 HOH HOH . C 3 HOH A 46 1646 14 HOH HOH . C 3 HOH A 47 1647 31 HOH HOH . C 3 HOH A 48 1648 94 HOH HOH . C 3 HOH A 49 1649 16 HOH HOH . C 3 HOH A 50 1650 6 HOH HOH . C 3 HOH A 51 1651 36 HOH HOH . C 3 HOH A 52 1652 54 HOH HOH . C 3 HOH A 53 1653 128 HOH HOH . C 3 HOH A 54 1654 60 HOH HOH . C 3 HOH A 55 1655 28 HOH HOH . C 3 HOH A 56 1656 35 HOH HOH . C 3 HOH A 57 1657 45 HOH HOH . C 3 HOH A 58 1658 3 HOH HOH . C 3 HOH A 59 1659 26 HOH HOH . C 3 HOH A 60 1660 70 HOH HOH . C 3 HOH A 61 1661 56 HOH HOH . C 3 HOH A 62 1662 138 HOH HOH . C 3 HOH A 63 1663 182 HOH HOH . C 3 HOH A 64 1664 5 HOH HOH . C 3 HOH A 65 1665 11 HOH HOH . C 3 HOH A 66 1666 154 HOH HOH . C 3 HOH A 67 1667 120 HOH HOH . C 3 HOH A 68 1668 147 HOH HOH . C 3 HOH A 69 1669 108 HOH HOH . C 3 HOH A 70 1670 177 HOH HOH . C 3 HOH A 71 1671 59 HOH HOH . C 3 HOH A 72 1672 82 HOH HOH . C 3 HOH A 73 1673 159 HOH HOH . C 3 HOH A 74 1674 130 HOH HOH . C 3 HOH A 75 1675 139 HOH HOH . C 3 HOH A 76 1676 76 HOH HOH . C 3 HOH A 77 1677 52 HOH HOH . C 3 HOH A 78 1678 191 HOH HOH . C 3 HOH A 79 1679 27 HOH HOH . C 3 HOH A 80 1680 55 HOH HOH . C 3 HOH A 81 1681 44 HOH HOH . C 3 HOH A 82 1682 122 HOH HOH . C 3 HOH A 83 1683 69 HOH HOH . C 3 HOH A 84 1684 21 HOH HOH . C 3 HOH A 85 1685 131 HOH HOH . C 3 HOH A 86 1686 39 HOH HOH . C 3 HOH A 87 1687 6 HOH HOH . C 3 HOH A 88 1688 23 HOH HOH . C 3 HOH A 89 1689 106 HOH HOH . C 3 HOH A 90 1690 167 HOH HOH . C 3 HOH A 91 1691 77 HOH HOH . C 3 HOH A 92 1692 42 HOH HOH . C 3 HOH A 93 1693 152 HOH HOH . C 3 HOH A 94 1694 119 HOH HOH . C 3 HOH A 95 1695 161 HOH HOH . C 3 HOH A 96 1696 113 HOH HOH . C 3 HOH A 97 1697 63 HOH HOH . C 3 HOH A 98 1698 145 HOH HOH . C 3 HOH A 99 1699 127 HOH HOH . C 3 HOH A 100 1700 19 HOH HOH . C 3 HOH A 101 1701 91 HOH HOH . C 3 HOH A 102 1702 194 HOH HOH . C 3 HOH A 103 1703 29 HOH HOH . C 3 HOH A 104 1704 88 HOH HOH . C 3 HOH A 105 1705 129 HOH HOH . C 3 HOH A 106 1706 15 HOH HOH . C 3 HOH A 107 1707 2 HOH HOH . C 3 HOH A 108 1708 49 HOH HOH . C 3 HOH A 109 1709 157 HOH HOH . C 3 HOH A 110 1710 40 HOH HOH . C 3 HOH A 111 1711 58 HOH HOH . C 3 HOH A 112 1712 90 HOH HOH . C 3 HOH A 113 1713 116 HOH HOH . C 3 HOH A 114 1714 142 HOH HOH . C 3 HOH A 115 1715 38 HOH HOH . C 3 HOH A 116 1716 48 HOH HOH . C 3 HOH A 117 1717 71 HOH HOH . C 3 HOH A 118 1718 43 HOH HOH . C 3 HOH A 119 1719 86 HOH HOH . C 3 HOH A 120 1720 18 HOH HOH . C 3 HOH A 121 1721 67 HOH HOH . C 3 HOH A 122 1722 80 HOH HOH . C 3 HOH A 123 1723 32 HOH HOH . C 3 HOH A 124 1724 37 HOH HOH . C 3 HOH A 125 1725 105 HOH HOH . C 3 HOH A 126 1726 96 HOH HOH . C 3 HOH A 127 1727 72 HOH HOH . C 3 HOH A 128 1728 136 HOH HOH . C 3 HOH A 129 1729 81 HOH HOH . C 3 HOH A 130 1730 125 HOH HOH . C 3 HOH A 131 1731 22 HOH HOH . C 3 HOH A 132 1732 2 HOH HOH . C 3 HOH A 133 1733 95 HOH HOH . C 3 HOH A 134 1734 137 HOH HOH . C 3 HOH A 135 1735 57 HOH HOH . C 3 HOH A 136 1736 173 HOH HOH . C 3 HOH A 137 1737 5 HOH HOH . C 3 HOH A 138 1738 24 HOH HOH . C 3 HOH A 139 1739 135 HOH HOH . C 3 HOH A 140 1740 53 HOH HOH . C 3 HOH A 141 1741 134 HOH HOH . C 3 HOH A 142 1742 175 HOH HOH . C 3 HOH A 143 1743 117 HOH HOH . C 3 HOH A 144 1744 165 HOH HOH . C 3 HOH A 145 1745 34 HOH HOH . C 3 HOH A 146 1746 93 HOH HOH . C 3 HOH A 147 1747 109 HOH HOH . C 3 HOH A 148 1748 174 HOH HOH . C 3 HOH A 149 1749 132 HOH HOH . C 3 HOH A 150 1750 133 HOH HOH . C 3 HOH A 151 1751 158 HOH HOH . C 3 HOH A 152 1752 146 HOH HOH . C 3 HOH A 153 1753 13 HOH HOH . C 3 HOH A 154 1754 150 HOH HOH . C 3 HOH A 155 1755 118 HOH HOH . C 3 HOH A 156 1756 126 HOH HOH . C 3 HOH A 157 1757 166 HOH HOH . C 3 HOH A 158 1758 8 HOH HOH . C 3 HOH A 159 1759 153 HOH HOH . C 3 HOH A 160 1760 199 HOH HOH . C 3 HOH A 161 1761 202 HOH HOH . C 3 HOH A 162 1762 164 HOH HOH . C 3 HOH A 163 1763 8 HOH HOH . C 3 HOH A 164 1764 115 HOH HOH . C 3 HOH A 165 1765 185 HOH HOH . C 3 HOH A 166 1766 114 HOH HOH . C 3 HOH A 167 1767 107 HOH HOH . C 3 HOH A 168 1768 181 HOH HOH . C 3 HOH A 169 1769 112 HOH HOH . C 3 HOH A 170 1770 198 HOH HOH . C 3 HOH A 171 1771 30 HOH HOH . C 3 HOH A 172 1772 204 HOH HOH . C 3 HOH A 173 1773 61 HOH HOH . C 3 HOH A 174 1774 186 HOH HOH . C 3 HOH A 175 1775 41 HOH HOH . C 3 HOH A 176 1776 51 HOH HOH . C 3 HOH A 177 1777 170 HOH HOH . C 3 HOH A 178 1778 190 HOH HOH . C 3 HOH A 179 1779 4 HOH HOH . C 3 HOH A 180 1780 201 HOH HOH . C 3 HOH A 181 1781 193 HOH HOH . C 3 HOH A 182 1782 3 HOH HOH . C 3 HOH A 183 1783 104 HOH HOH . C 3 HOH A 184 1784 156 HOH HOH . C 3 HOH A 185 1785 110 HOH HOH . C 3 HOH A 186 1786 188 HOH HOH . C 3 HOH A 187 1787 168 HOH HOH . C 3 HOH A 188 1788 102 HOH HOH . C 3 HOH A 189 1789 68 HOH HOH . C 3 HOH A 190 1790 103 HOH HOH . C 3 HOH A 191 1791 46 HOH HOH . C 3 HOH A 192 1792 99 HOH HOH . C 3 HOH A 193 1793 78 HOH HOH . C 3 HOH A 194 1794 73 HOH HOH . C 3 HOH A 195 1795 196 HOH HOH . C 3 HOH A 196 1796 200 HOH HOH . C 3 HOH A 197 1797 111 HOH HOH . C 3 HOH A 198 1798 148 HOH HOH . C 3 HOH A 199 1799 189 HOH HOH . C 3 HOH A 200 1800 87 HOH HOH . C 3 HOH A 201 1801 192 HOH HOH . C 3 HOH A 202 1802 97 HOH HOH . C 3 HOH A 203 1803 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UVV . . . B 2 -21.225 12.202 25.834 0.41 14.02 ? N1 UVV 1501 A 1 HETATM 2 C C4 UVV . . . B 2 -19.238 13.624 25.571 0.41 14.55 ? C4 UVV 1501 A 1 HETATM 3 C C5 UVV . . . B 2 -20.163 12.604 25.04 0.41 13.95 ? C5 UVV 1501 A 1 HETATM 4 C C6 UVV . . . B 2 -22.155 11.205 25.239 0.41 12.74 ? C6 UVV 1501 A 1 HETATM 5 N N UVV . . . B 2 -18.306 14.114 24.681 0.41 15.17 ? N UVV 1501 A 1 HETATM 6 C C UVV . . . B 2 -22.47 12.31 28.021 0.41 15.12 ? C UVV 1501 A 1 HETATM 7 O O UVV . . . B 2 -20.02 12.092 23.939 0.41 13.42 ? O UVV 1501 A 1 HETATM 8 C C1 UVV . . . B 2 -21.37 12.746 27.137 0.41 14.47 ? C1 UVV 1501 A 1 HETATM 9 C C2 UVV . . . B 2 -20.48 13.651 27.613 0.41 14.8 ? C2 UVV 1501 A 1 HETATM 10 C C3 UVV . . . B 2 -19.391 14.111 26.837 0.41 14.93 ? C3 UVV 1501 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #