data_5RK5 # _model_server_result.job_id klsGCyPuPJiGYVvXaJNtdw _model_server_result.datetime_utc '2024-10-19 21:19:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RK5 # _exptl.entry_id 5RK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 145.183 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(methoxymethyl)-1,3,4-thiadiazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.36 _cell.angle_gamma 90 _cell.entry_id 5RK5 _cell.length_a 81.659 _cell.length_b 27.527 _cell.length_c 55.667 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H7 N3 O S' _chem_comp.formula_weight 145.183 _chem_comp.id UVS _chem_comp.mon_nstd_flag . _chem_comp.name 5-(methoxymethyl)-1,3,4-thiadiazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O UVS sing 358 n n N1 N UVS sing 359 n y N1 C3 UVS doub 360 n y N C2 UVS doub 361 n y O C1 UVS sing 362 n n C3 N2 UVS sing 363 n n C3 S UVS sing 364 n y C2 C1 UVS sing 365 n n C2 S UVS sing 366 n y C H1 UVS sing 367 n n C H2 UVS sing 368 n n C H3 UVS sing 369 n n C1 H4 UVS sing 370 n n C1 H5 UVS sing 371 n n N2 H6 UVS sing 372 n n N2 H7 UVS sing 373 n n # _atom_sites.entry_id 5RK5 _atom_sites.fract_transf_matrix[1][1] 0.012246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002019 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UVS A 1 1501 1501 UVS LIG . C 3 HOH A 1 1601 7 HOH HOH . C 3 HOH A 2 1602 85 HOH HOH . C 3 HOH A 3 1603 128 HOH HOH . C 3 HOH A 4 1604 207 HOH HOH . C 3 HOH A 5 1605 84 HOH HOH . C 3 HOH A 6 1606 98 HOH HOH . C 3 HOH A 7 1607 3 HOH HOH . C 3 HOH A 8 1608 33 HOH HOH . C 3 HOH A 9 1609 194 HOH HOH . C 3 HOH A 10 1610 17 HOH HOH . C 3 HOH A 11 1611 18 HOH HOH . C 3 HOH A 12 1612 209 HOH HOH . C 3 HOH A 13 1613 1 HOH HOH . C 3 HOH A 14 1614 83 HOH HOH . C 3 HOH A 15 1615 50 HOH HOH . C 3 HOH A 16 1616 121 HOH HOH . C 3 HOH A 17 1617 176 HOH HOH . C 3 HOH A 18 1618 100 HOH HOH . C 3 HOH A 19 1619 187 HOH HOH . C 3 HOH A 20 1620 210 HOH HOH . C 3 HOH A 21 1621 89 HOH HOH . C 3 HOH A 22 1622 160 HOH HOH . C 3 HOH A 23 1623 4 HOH HOH . C 3 HOH A 24 1624 124 HOH HOH . C 3 HOH A 25 1625 37 HOH HOH . C 3 HOH A 26 1626 12 HOH HOH . C 3 HOH A 27 1627 143 HOH HOH . C 3 HOH A 28 1628 144 HOH HOH . C 3 HOH A 29 1629 135 HOH HOH . C 3 HOH A 30 1630 20 HOH HOH . C 3 HOH A 31 1631 60 HOH HOH . C 3 HOH A 32 1632 70 HOH HOH . C 3 HOH A 33 1633 129 HOH HOH . C 3 HOH A 34 1634 31 HOH HOH . C 3 HOH A 35 1635 74 HOH HOH . C 3 HOH A 36 1636 205 HOH HOH . C 3 HOH A 37 1637 32 HOH HOH . C 3 HOH A 38 1638 180 HOH HOH . C 3 HOH A 39 1639 25 HOH HOH . C 3 HOH A 40 1640 16 HOH HOH . C 3 HOH A 41 1641 140 HOH HOH . C 3 HOH A 42 1642 44 HOH HOH . C 3 HOH A 43 1643 182 HOH HOH . C 3 HOH A 44 1644 25 HOH HOH . C 3 HOH A 45 1645 94 HOH HOH . C 3 HOH A 46 1646 130 HOH HOH . C 3 HOH A 47 1647 177 HOH HOH . C 3 HOH A 48 1648 105 HOH HOH . C 3 HOH A 49 1649 9 HOH HOH . C 3 HOH A 50 1650 11 HOH HOH . C 3 HOH A 51 1651 164 HOH HOH . C 3 HOH A 52 1652 139 HOH HOH . C 3 HOH A 53 1653 71 HOH HOH . C 3 HOH A 54 1654 1 HOH HOH . C 3 HOH A 55 1655 204 HOH HOH . C 3 HOH A 56 1656 39 HOH HOH . C 3 HOH A 57 1657 14 HOH HOH . C 3 HOH A 58 1658 35 HOH HOH . C 3 HOH A 59 1659 113 HOH HOH . C 3 HOH A 60 1660 28 HOH HOH . C 3 HOH A 61 1661 122 HOH HOH . C 3 HOH A 62 1662 3 HOH HOH . C 3 HOH A 63 1663 55 HOH HOH . C 3 HOH A 64 1664 36 HOH HOH . C 3 HOH A 65 1665 108 HOH HOH . C 3 HOH A 66 1666 5 HOH HOH . C 3 HOH A 67 1667 137 HOH HOH . C 3 HOH A 68 1668 15 HOH HOH . C 3 HOH A 69 1669 206 HOH HOH . C 3 HOH A 70 1670 69 HOH HOH . C 3 HOH A 71 1671 44 HOH HOH . C 3 HOH A 72 1672 52 HOH HOH . C 3 HOH A 73 1673 145 HOH HOH . C 3 HOH A 74 1674 6 HOH HOH . C 3 HOH A 75 1675 64 HOH HOH . C 3 HOH A 76 1676 56 HOH HOH . C 3 HOH A 77 1677 77 HOH HOH . C 3 HOH A 78 1678 151 HOH HOH . C 3 HOH A 79 1679 45 HOH HOH . C 3 HOH A 80 1680 158 HOH HOH . C 3 HOH A 81 1681 12 HOH HOH . C 3 HOH A 82 1682 119 HOH HOH . C 3 HOH A 83 1683 48 HOH HOH . C 3 HOH A 84 1684 76 HOH HOH . C 3 HOH A 85 1685 43 HOH HOH . C 3 HOH A 86 1686 86 HOH HOH . C 3 HOH A 87 1687 23 HOH HOH . C 3 HOH A 88 1688 75 HOH HOH . C 3 HOH A 89 1689 80 HOH HOH . C 3 HOH A 90 1690 24 HOH HOH . C 3 HOH A 91 1691 138 HOH HOH . C 3 HOH A 92 1692 82 HOH HOH . C 3 HOH A 93 1693 19 HOH HOH . C 3 HOH A 94 1694 159 HOH HOH . C 3 HOH A 95 1695 184 HOH HOH . C 3 HOH A 96 1696 191 HOH HOH . C 3 HOH A 97 1697 49 HOH HOH . C 3 HOH A 98 1698 157 HOH HOH . C 3 HOH A 99 1699 91 HOH HOH . C 3 HOH A 100 1700 96 HOH HOH . C 3 HOH A 101 1701 29 HOH HOH . C 3 HOH A 102 1702 93 HOH HOH . C 3 HOH A 103 1703 58 HOH HOH . C 3 HOH A 104 1704 38 HOH HOH . C 3 HOH A 105 1705 65 HOH HOH . C 3 HOH A 106 1706 181 HOH HOH . C 3 HOH A 107 1707 208 HOH HOH . C 3 HOH A 108 1708 27 HOH HOH . C 3 HOH A 109 1709 37 HOH HOH . C 3 HOH A 110 1710 40 HOH HOH . C 3 HOH A 111 1711 67 HOH HOH . C 3 HOH A 112 1712 178 HOH HOH . C 3 HOH A 113 1713 136 HOH HOH . C 3 HOH A 114 1714 63 HOH HOH . C 3 HOH A 115 1715 40 HOH HOH . C 3 HOH A 116 1716 117 HOH HOH . C 3 HOH A 117 1717 54 HOH HOH . C 3 HOH A 118 1718 106 HOH HOH . C 3 HOH A 119 1719 88 HOH HOH . C 3 HOH A 120 1720 62 HOH HOH . C 3 HOH A 121 1721 123 HOH HOH . C 3 HOH A 122 1722 8 HOH HOH . C 3 HOH A 123 1723 183 HOH HOH . C 3 HOH A 124 1724 53 HOH HOH . C 3 HOH A 125 1725 15 HOH HOH . C 3 HOH A 126 1726 95 HOH HOH . C 3 HOH A 127 1727 116 HOH HOH . C 3 HOH A 128 1728 22 HOH HOH . C 3 HOH A 129 1729 125 HOH HOH . C 3 HOH A 130 1730 16 HOH HOH . C 3 HOH A 131 1731 127 HOH HOH . C 3 HOH A 132 1732 38 HOH HOH . C 3 HOH A 133 1733 72 HOH HOH . C 3 HOH A 134 1734 81 HOH HOH . C 3 HOH A 135 1735 175 HOH HOH . C 3 HOH A 136 1736 57 HOH HOH . C 3 HOH A 137 1737 174 HOH HOH . C 3 HOH A 138 1738 186 HOH HOH . C 3 HOH A 139 1739 35 HOH HOH . C 3 HOH A 140 1740 166 HOH HOH . C 3 HOH A 141 1741 118 HOH HOH . C 3 HOH A 142 1742 92 HOH HOH . C 3 HOH A 143 1743 34 HOH HOH . C 3 HOH A 144 1744 10 HOH HOH . C 3 HOH A 145 1745 131 HOH HOH . C 3 HOH A 146 1746 7 HOH HOH . C 3 HOH A 147 1747 126 HOH HOH . C 3 HOH A 148 1748 9 HOH HOH . C 3 HOH A 149 1749 109 HOH HOH . C 3 HOH A 150 1750 152 HOH HOH . C 3 HOH A 151 1751 90 HOH HOH . C 3 HOH A 152 1752 120 HOH HOH . C 3 HOH A 153 1753 13 HOH HOH . C 3 HOH A 154 1754 4 HOH HOH . C 3 HOH A 155 1755 43 HOH HOH . C 3 HOH A 156 1756 142 HOH HOH . C 3 HOH A 157 1757 22 HOH HOH . C 3 HOH A 158 1758 34 HOH HOH . C 3 HOH A 159 1759 31 HOH HOH . C 3 HOH A 160 1760 46 HOH HOH . C 3 HOH A 161 1761 185 HOH HOH . C 3 HOH A 162 1762 150 HOH HOH . C 3 HOH A 163 1763 32 HOH HOH . C 3 HOH A 164 1764 8 HOH HOH . C 3 HOH A 165 1765 11 HOH HOH . C 3 HOH A 166 1766 114 HOH HOH . C 3 HOH A 167 1767 27 HOH HOH . C 3 HOH A 168 1768 115 HOH HOH . C 3 HOH A 169 1769 190 HOH HOH . C 3 HOH A 170 1770 39 HOH HOH . C 3 HOH A 171 1771 107 HOH HOH . C 3 HOH A 172 1772 28 HOH HOH . C 3 HOH A 173 1773 41 HOH HOH . C 3 HOH A 174 1774 199 HOH HOH . C 3 HOH A 175 1775 112 HOH HOH . C 3 HOH A 176 1776 33 HOH HOH . C 3 HOH A 177 1777 170 HOH HOH . C 3 HOH A 178 1778 61 HOH HOH . C 3 HOH A 179 1779 2 HOH HOH . C 3 HOH A 180 1780 202 HOH HOH . C 3 HOH A 181 1781 42 HOH HOH . C 3 HOH A 182 1782 198 HOH HOH . C 3 HOH A 183 1783 172 HOH HOH . C 3 HOH A 184 1784 51 HOH HOH . C 3 HOH A 185 1785 30 HOH HOH . C 3 HOH A 186 1786 132 HOH HOH . C 3 HOH A 187 1787 110 HOH HOH . C 3 HOH A 188 1788 26 HOH HOH . C 3 HOH A 189 1789 45 HOH HOH . C 3 HOH A 190 1790 24 HOH HOH . C 3 HOH A 191 1791 196 HOH HOH . C 3 HOH A 192 1792 78 HOH HOH . C 3 HOH A 193 1793 41 HOH HOH . C 3 HOH A 194 1794 188 HOH HOH . C 3 HOH A 195 1795 102 HOH HOH . C 3 HOH A 196 1796 46 HOH HOH . C 3 HOH A 197 1797 5 HOH HOH . C 3 HOH A 198 1798 36 HOH HOH . C 3 HOH A 199 1799 68 HOH HOH . C 3 HOH A 200 1800 6 HOH HOH . C 3 HOH A 201 1801 23 HOH HOH . C 3 HOH A 202 1802 193 HOH HOH . C 3 HOH A 203 1803 20 HOH HOH . C 3 HOH A 204 1804 73 HOH HOH . C 3 HOH A 205 1805 134 HOH HOH . C 3 HOH A 206 1806 103 HOH HOH . C 3 HOH A 207 1807 201 HOH HOH . C 3 HOH A 208 1808 14 HOH HOH . C 3 HOH A 209 1809 29 HOH HOH . C 3 HOH A 210 1810 195 HOH HOH . C 3 HOH A 211 1811 13 HOH HOH . C 3 HOH A 212 1812 189 HOH HOH . C 3 HOH A 213 1813 21 HOH HOH . C 3 HOH A 214 1814 17 HOH HOH . C 3 HOH A 215 1815 149 HOH HOH . C 3 HOH A 216 1816 19 HOH HOH . C 3 HOH A 217 1817 111 HOH HOH . C 3 HOH A 218 1818 192 HOH HOH . C 3 HOH A 219 1819 200 HOH HOH . C 3 HOH A 220 1820 97 HOH HOH . C 3 HOH A 221 1821 87 HOH HOH . C 3 HOH A 222 1822 79 HOH HOH . C 3 HOH A 223 1823 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UVS . . . B 2 -21.106 11.761 25.335 0.62 12.96 ? N1 UVS 1501 A 1 HETATM 2 N N UVS . . . B 2 -19.81 12.06 25.468 0.62 12.54 ? N UVS 1501 A 1 HETATM 3 C C UVS . . . B 2 -17.969 14.569 24.577 0.62 16.47 ? C UVS 1501 A 1 HETATM 4 O O UVS . . . B 2 -17.927 14.647 25.993 0.62 15.72 ? O UVS 1501 A 1 HETATM 5 C C1 UVS . . . B 2 -18.109 13.412 26.708 0.62 14.58 ? C1 UVS 1501 A 1 HETATM 6 C C2 UVS . . . B 2 -19.511 12.9 26.446 0.62 13.2 ? C2 UVS 1501 A 1 HETATM 7 C C3 UVS . . . B 2 -21.851 12.398 26.287 0.62 13.79 ? C3 UVS 1501 A 1 HETATM 8 N N2 UVS . . . B 2 -23.183 12.256 26.339 0.62 14.45 ? N2 UVS 1501 A 1 HETATM 9 S S UVS . . . B 2 -20.917 13.395 27.367 0.62 13.73 ? S UVS 1501 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #