data_5RKB # _model_server_result.job_id c8_Vx8HFKIZ0BIe2wOpDfA _model_server_result.datetime_utc '2024-12-23 07:51:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RKB # _exptl.entry_id 5RKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S)-1-(1-cyclopentyl-1H-pyrazol-4-yl)ethan-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.73 _cell.angle_gamma 90 _cell.entry_id 5RKB _cell.length_a 81.961 _cell.length_b 27.088 _cell.length_c 55.643 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N2 O' _chem_comp.formula_weight 180.247 _chem_comp.id UWG _chem_comp.mon_nstd_flag . _chem_comp.name (1S)-1-(1-cyclopentyl-1H-pyrazol-4-yl)ethan-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 UWG sing 358 n n C7 C8 UWG sing 359 n n C6 C5 UWG sing 360 n n N C3 UWG doub 361 n y N N1 UWG sing 362 n y C3 C2 UWG sing 363 n y O C1 UWG sing 364 n n C8 C9 UWG sing 365 n n C5 N1 UWG sing 366 n n C5 C9 UWG sing 367 n n N1 C4 UWG sing 368 n y C2 C1 UWG sing 369 n n C2 C4 UWG doub 370 n y C1 C UWG sing 371 n n C4 H1 UWG sing 372 n n C5 H2 UWG sing 373 n n C6 H3 UWG sing 374 n n C6 H4 UWG sing 375 n n C7 H5 UWG sing 376 n n C7 H6 UWG sing 377 n n C8 H7 UWG sing 378 n n C8 H8 UWG sing 379 n n C H9 UWG sing 380 n n C H10 UWG sing 381 n n C H11 UWG sing 382 n n O H12 UWG sing 383 n n C1 H13 UWG sing 384 n n C3 H14 UWG sing 385 n n C9 H15 UWG sing 386 n n C9 H16 UWG sing 387 n n # _atom_sites.entry_id 5RKB _atom_sites.fract_transf_matrix[1][1] 0.012201 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002092 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UWG A 1 1501 1501 UWG LIG . C 3 HOH A 1 1601 41 HOH HOH . C 3 HOH A 2 1602 195 HOH HOH . C 3 HOH A 3 1603 84 HOH HOH . C 3 HOH A 4 1604 176 HOH HOH . C 3 HOH A 5 1605 16 HOH HOH . C 3 HOH A 6 1606 12 HOH HOH . C 3 HOH A 7 1607 33 HOH HOH . C 3 HOH A 8 1608 17 HOH HOH . C 3 HOH A 9 1609 151 HOH HOH . C 3 HOH A 10 1610 50 HOH HOH . C 3 HOH A 11 1611 160 HOH HOH . C 3 HOH A 12 1612 9 HOH HOH . C 3 HOH A 13 1613 205 HOH HOH . C 3 HOH A 14 1614 140 HOH HOH . C 3 HOH A 15 1615 60 HOH HOH . C 3 HOH A 16 1616 98 HOH HOH . C 3 HOH A 17 1617 89 HOH HOH . C 3 HOH A 18 1618 124 HOH HOH . C 3 HOH A 19 1619 83 HOH HOH . C 3 HOH A 20 1620 55 HOH HOH . C 3 HOH A 21 1621 121 HOH HOH . C 3 HOH A 22 1622 94 HOH HOH . C 3 HOH A 23 1623 139 HOH HOH . C 3 HOH A 24 1624 4 HOH HOH . C 3 HOH A 25 1625 187 HOH HOH . C 3 HOH A 26 1626 31 HOH HOH . C 3 HOH A 27 1627 21 HOH HOH . C 3 HOH A 28 1628 17 HOH HOH . C 3 HOH A 29 1629 10 HOH HOH . C 3 HOH A 30 1630 74 HOH HOH . C 3 HOH A 31 1631 56 HOH HOH . C 3 HOH A 32 1632 144 HOH HOH . C 3 HOH A 33 1633 25 HOH HOH . C 3 HOH A 34 1634 92 HOH HOH . C 3 HOH A 35 1635 59 HOH HOH . C 3 HOH A 36 1636 35 HOH HOH . C 3 HOH A 37 1637 184 HOH HOH . C 3 HOH A 38 1638 65 HOH HOH . C 3 HOH A 39 1639 9 HOH HOH . C 3 HOH A 40 1640 20 HOH HOH . C 3 HOH A 41 1641 3 HOH HOH . C 3 HOH A 42 1642 1 HOH HOH . C 3 HOH A 43 1643 62 HOH HOH . C 3 HOH A 44 1644 207 HOH HOH . C 3 HOH A 45 1645 6 HOH HOH . C 3 HOH A 46 1646 45 HOH HOH . C 3 HOH A 47 1647 28 HOH HOH . C 3 HOH A 48 1648 182 HOH HOH . C 3 HOH A 49 1649 191 HOH HOH . C 3 HOH A 50 1650 3 HOH HOH . C 3 HOH A 51 1651 108 HOH HOH . C 3 HOH A 52 1652 76 HOH HOH . C 3 HOH A 53 1653 36 HOH HOH . C 3 HOH A 54 1654 26 HOH HOH . C 3 HOH A 55 1655 77 HOH HOH . C 3 HOH A 56 1656 64 HOH HOH . C 3 HOH A 57 1657 5 HOH HOH . C 3 HOH A 58 1658 39 HOH HOH . C 3 HOH A 59 1659 70 HOH HOH . C 3 HOH A 60 1660 75 HOH HOH . C 3 HOH A 61 1661 63 HOH HOH . C 3 HOH A 62 1662 52 HOH HOH . C 3 HOH A 63 1663 158 HOH HOH . C 3 HOH A 64 1664 137 HOH HOH . C 3 HOH A 65 1665 130 HOH HOH . C 3 HOH A 66 1666 54 HOH HOH . C 3 HOH A 67 1667 71 HOH HOH . C 3 HOH A 68 1668 69 HOH HOH . C 3 HOH A 69 1669 131 HOH HOH . C 3 HOH A 70 1670 16 HOH HOH . C 3 HOH A 71 1671 29 HOH HOH . C 3 HOH A 72 1672 154 HOH HOH . C 3 HOH A 73 1673 23 HOH HOH . C 3 HOH A 74 1674 11 HOH HOH . C 3 HOH A 75 1675 82 HOH HOH . C 3 HOH A 76 1676 177 HOH HOH . C 3 HOH A 77 1677 40 HOH HOH . C 3 HOH A 78 1678 178 HOH HOH . C 3 HOH A 79 1679 122 HOH HOH . C 3 HOH A 80 1680 37 HOH HOH . C 3 HOH A 81 1681 48 HOH HOH . C 3 HOH A 82 1682 27 HOH HOH . C 3 HOH A 83 1683 19 HOH HOH . C 3 HOH A 84 1684 91 HOH HOH . C 3 HOH A 85 1685 145 HOH HOH . C 3 HOH A 86 1686 13 HOH HOH . C 3 HOH A 87 1687 116 HOH HOH . C 3 HOH A 88 1688 159 HOH HOH . C 3 HOH A 89 1689 138 HOH HOH . C 3 HOH A 90 1690 15 HOH HOH . C 3 HOH A 91 1691 105 HOH HOH . C 3 HOH A 92 1692 43 HOH HOH . C 3 HOH A 93 1693 88 HOH HOH . C 3 HOH A 94 1694 113 HOH HOH . C 3 HOH A 95 1695 157 HOH HOH . C 3 HOH A 96 1696 1 HOH HOH . C 3 HOH A 97 1697 67 HOH HOH . C 3 HOH A 98 1698 125 HOH HOH . C 3 HOH A 99 1699 128 HOH HOH . C 3 HOH A 100 1700 13 HOH HOH . C 3 HOH A 101 1701 119 HOH HOH . C 3 HOH A 102 1702 38 HOH HOH . C 3 HOH A 103 1703 49 HOH HOH . C 3 HOH A 104 1704 81 HOH HOH . C 3 HOH A 105 1705 24 HOH HOH . C 3 HOH A 106 1706 80 HOH HOH . C 3 HOH A 107 1707 106 HOH HOH . C 3 HOH A 108 1708 152 HOH HOH . C 3 HOH A 109 1709 175 HOH HOH . C 3 HOH A 110 1710 127 HOH HOH . C 3 HOH A 111 1711 86 HOH HOH . C 3 HOH A 112 1712 95 HOH HOH . C 3 HOH A 113 1713 22 HOH HOH . C 3 HOH A 114 1714 72 HOH HOH . C 3 HOH A 115 1715 129 HOH HOH . C 3 HOH A 116 1716 57 HOH HOH . C 3 HOH A 117 1717 134 HOH HOH . C 3 HOH A 118 1718 18 HOH HOH . C 3 HOH A 119 1719 90 HOH HOH . C 3 HOH A 120 1720 174 HOH HOH . C 3 HOH A 121 1721 118 HOH HOH . C 3 HOH A 122 1722 53 HOH HOH . C 3 HOH A 123 1723 4 HOH HOH . C 3 HOH A 124 1724 34 HOH HOH . C 3 HOH A 125 1725 96 HOH HOH . C 3 HOH A 126 1726 117 HOH HOH . C 3 HOH A 127 1727 123 HOH HOH . C 3 HOH A 128 1728 126 HOH HOH . C 3 HOH A 129 1729 109 HOH HOH . C 3 HOH A 130 1730 99 HOH HOH . C 3 HOH A 131 1731 181 HOH HOH . C 3 HOH A 132 1732 120 HOH HOH . C 3 HOH A 133 1733 58 HOH HOH . C 3 HOH A 134 1734 136 HOH HOH . C 3 HOH A 135 1735 150 HOH HOH . C 3 HOH A 136 1736 164 HOH HOH . C 3 HOH A 137 1737 173 HOH HOH . C 3 HOH A 138 1738 8 HOH HOH . C 3 HOH A 139 1739 202 HOH HOH . C 3 HOH A 140 1740 198 HOH HOH . C 3 HOH A 141 1741 146 HOH HOH . C 3 HOH A 142 1742 208 HOH HOH . C 3 HOH A 143 1743 115 HOH HOH . C 3 HOH A 144 1744 12 HOH HOH . C 3 HOH A 145 1745 199 HOH HOH . C 3 HOH A 146 1746 185 HOH HOH . C 3 HOH A 147 1747 8 HOH HOH . C 3 HOH A 148 1748 107 HOH HOH . C 3 HOH A 149 1749 14 HOH HOH . C 3 HOH A 150 1750 114 HOH HOH . C 3 HOH A 151 1751 166 HOH HOH . C 3 HOH A 152 1752 18 HOH HOH . C 3 HOH A 153 1753 112 HOH HOH . C 3 HOH A 154 1754 5 HOH HOH . C 3 HOH A 155 1755 61 HOH HOH . C 3 HOH A 156 1756 186 HOH HOH . C 3 HOH A 157 1757 156 HOH HOH . C 3 HOH A 158 1758 133 HOH HOH . C 3 HOH A 159 1759 190 HOH HOH . C 3 HOH A 160 1760 110 HOH HOH . C 3 HOH A 161 1761 2 HOH HOH . C 3 HOH A 162 1762 51 HOH HOH . C 3 HOH A 163 1763 172 HOH HOH . C 3 HOH A 164 1764 188 HOH HOH . C 3 HOH A 165 1765 170 HOH HOH . C 3 HOH A 166 1766 11 HOH HOH . C 3 HOH A 167 1767 15 HOH HOH . C 3 HOH A 168 1768 149 HOH HOH . C 3 HOH A 169 1769 78 HOH HOH . C 3 HOH A 170 1770 46 HOH HOH . C 3 HOH A 171 1771 102 HOH HOH . C 3 HOH A 172 1772 103 HOH HOH . C 3 HOH A 173 1773 68 HOH HOH . C 3 HOH A 174 1774 132 HOH HOH . C 3 HOH A 175 1775 196 HOH HOH . C 3 HOH A 176 1776 73 HOH HOH . C 3 HOH A 177 1777 200 HOH HOH . C 3 HOH A 178 1778 6 HOH HOH . C 3 HOH A 179 1779 201 HOH HOH . C 3 HOH A 180 1780 111 HOH HOH . C 3 HOH A 181 1781 189 HOH HOH . C 3 HOH A 182 1782 97 HOH HOH . C 3 HOH A 183 1783 87 HOH HOH . C 3 HOH A 184 1784 192 HOH HOH . C 3 HOH A 185 1785 14 HOH HOH . C 3 HOH A 186 1786 7 HOH HOH . C 3 HOH A 187 1787 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UWG . . . B 2 -19.844 12.59 26.176 0.25 16.31 ? N1 UWG 1501 A 1 HETATM 2 C C4 UWG . . . B 2 -20.935 13.108 26.864 0.25 15.65 ? C4 UWG 1501 A 1 HETATM 3 C C5 UWG . . . B 2 -18.474 13.12 26.165 0.25 17.02 ? C5 UWG 1501 A 1 HETATM 4 C C6 UWG . . . B 2 -18.105 13.486 24.717 0.25 17.31 ? C6 UWG 1501 A 1 HETATM 5 C C7 UWG . . . B 2 -18.41 14.951 24.583 0.25 17.21 ? C7 UWG 1501 A 1 HETATM 6 C C8 UWG . . . B 2 -18.09 15.554 25.929 0.25 17.28 ? C8 UWG 1501 A 1 HETATM 7 N N UWG . . . B 2 -20.186 11.544 25.373 0.25 15.62 ? N UWG 1501 A 1 HETATM 8 C C UWG . . . B 2 -23.704 12.301 28.26 0.25 14.9 ? C UWG 1501 A 1 HETATM 9 O O UWG . . . B 2 -24.365 12.069 25.863 0.25 13.27 ? O UWG 1501 A 1 HETATM 10 C C1 UWG . . . B 2 -23.446 12.645 26.795 0.25 14.55 ? C1 UWG 1501 A 1 HETATM 11 C C2 UWG . . . B 2 -22.031 12.383 26.437 0.25 15.19 ? C2 UWG 1501 A 1 HETATM 12 C C3 UWG . . . B 2 -21.533 11.405 25.518 0.25 15.31 ? C3 UWG 1501 A 1 HETATM 13 C C9 UWG . . . B 2 -18.388 14.449 26.938 0.25 17.13 ? C9 UWG 1501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 13 #