data_5RKC # _model_server_result.job_id 7BALe4p638JJCGOyHr57nw _model_server_result.datetime_utc '2024-10-11 06:16:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RKC # _exptl.entry_id 5RKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.192 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-methyl-1-([1,2,4]triazolo[4,3-a]pyridin-3-yl)methanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.29 _cell.angle_gamma 90 _cell.entry_id 5RKC _cell.length_a 81.83 _cell.length_b 27.4 _cell.length_c 55.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H10 N4' _chem_comp.formula_weight 162.192 _chem_comp.id UWD _chem_comp.mon_nstd_flag . _chem_comp.name N-methyl-1-([1,2,4]triazolo[4,3-a]pyridin-3-yl)methanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N UWD sing 358 n n N2 N1 UWD sing 359 n y N2 C3 UWD doub 360 n y N1 C2 UWD doub 361 n y C3 C4 UWD sing 362 n y C3 N3 UWD sing 363 n y N C1 UWD sing 364 n n C2 C1 UWD sing 365 n n C2 N3 UWD sing 366 n y C4 C5 UWD doub 367 n y N3 C7 UWD sing 368 n y C5 C6 UWD sing 369 n y C7 C6 UWD doub 370 n y C4 H1 UWD sing 371 n n C5 H2 UWD sing 372 n n C6 H3 UWD sing 373 n n C7 H4 UWD sing 374 n n N H5 UWD sing 375 n n C H7 UWD sing 376 n n C H8 UWD sing 377 n n C H9 UWD sing 378 n n C1 H10 UWD sing 379 n n C1 H11 UWD sing 380 n n # _atom_sites.entry_id 5RKC _atom_sites.fract_transf_matrix[1][1] 0.01222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002219 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UWD A 1 1501 1501 UWD LIG . C 3 HOH A 1 1601 197 HOH HOH . C 3 HOH A 2 1602 85 HOH HOH . C 3 HOH A 3 1603 89 HOH HOH . C 3 HOH A 4 1604 7 HOH HOH . C 3 HOH A 5 1605 151 HOH HOH . C 3 HOH A 6 1606 98 HOH HOH . C 3 HOH A 7 1607 17 HOH HOH . C 3 HOH A 8 1608 121 HOH HOH . C 3 HOH A 9 1609 65 HOH HOH . C 3 HOH A 10 1610 187 HOH HOH . C 3 HOH A 11 1611 183 HOH HOH . C 3 HOH A 12 1612 145 HOH HOH . C 3 HOH A 13 1613 33 HOH HOH . C 3 HOH A 14 1614 50 HOH HOH . C 3 HOH A 15 1615 83 HOH HOH . C 3 HOH A 16 1616 10 HOH HOH . C 3 HOH A 17 1617 25 HOH HOH . C 3 HOH A 18 1618 135 HOH HOH . C 3 HOH A 19 1619 105 HOH HOH . C 3 HOH A 20 1620 124 HOH HOH . C 3 HOH A 21 1621 47 HOH HOH . C 3 HOH A 22 1622 9 HOH HOH . C 3 HOH A 23 1623 12 HOH HOH . C 3 HOH A 24 1624 141 HOH HOH . C 3 HOH A 25 1625 184 HOH HOH . C 3 HOH A 26 1626 31 HOH HOH . C 3 HOH A 27 1627 74 HOH HOH . C 3 HOH A 28 1628 154 HOH HOH . C 3 HOH A 29 1629 20 HOH HOH . C 3 HOH A 30 1630 171 HOH HOH . C 3 HOH A 31 1631 70 HOH HOH . C 3 HOH A 32 1632 208 HOH HOH . C 3 HOH A 33 1633 16 HOH HOH . C 3 HOH A 34 1634 66 HOH HOH . C 3 HOH A 35 1635 172 HOH HOH . C 3 HOH A 36 1636 174 HOH HOH . C 3 HOH A 37 1637 36 HOH HOH . C 3 HOH A 38 1638 62 HOH HOH . C 3 HOH A 39 1639 140 HOH HOH . C 3 HOH A 40 1640 4 HOH HOH . C 3 HOH A 41 1641 12 HOH HOH . C 3 HOH A 42 1642 27 HOH HOH . C 3 HOH A 43 1643 176 HOH HOH . C 3 HOH A 44 1644 1 HOH HOH . C 3 HOH A 45 1645 130 HOH HOH . C 3 HOH A 46 1646 94 HOH HOH . C 3 HOH A 47 1647 14 HOH HOH . C 3 HOH A 48 1648 146 HOH HOH . C 3 HOH A 49 1649 84 HOH HOH . C 3 HOH A 50 1650 52 HOH HOH . C 3 HOH A 51 1651 45 HOH HOH . C 3 HOH A 52 1652 131 HOH HOH . C 3 HOH A 53 1653 76 HOH HOH . C 3 HOH A 54 1654 139 HOH HOH . C 3 HOH A 55 1655 101 HOH HOH . C 3 HOH A 56 1656 11 HOH HOH . C 3 HOH A 57 1657 92 HOH HOH . C 3 HOH A 58 1658 48 HOH HOH . C 3 HOH A 59 1659 182 HOH HOH . C 3 HOH A 60 1660 10 HOH HOH . C 3 HOH A 61 1661 3 HOH HOH . C 3 HOH A 62 1662 159 HOH HOH . C 3 HOH A 63 1663 60 HOH HOH . C 3 HOH A 64 1664 54 HOH HOH . C 3 HOH A 65 1665 59 HOH HOH . C 3 HOH A 66 1666 21 HOH HOH . C 3 HOH A 67 1667 63 HOH HOH . C 3 HOH A 68 1668 22 HOH HOH . C 3 HOH A 69 1669 35 HOH HOH . C 3 HOH A 70 1670 207 HOH HOH . C 3 HOH A 71 1671 77 HOH HOH . C 3 HOH A 72 1672 128 HOH HOH . C 3 HOH A 73 1673 5 HOH HOH . C 3 HOH A 74 1674 55 HOH HOH . C 3 HOH A 75 1675 39 HOH HOH . C 3 HOH A 76 1676 108 HOH HOH . C 3 HOH A 77 1677 119 HOH HOH . C 3 HOH A 78 1678 28 HOH HOH . C 3 HOH A 79 1679 157 HOH HOH . C 3 HOH A 80 1680 6 HOH HOH . C 3 HOH A 81 1681 64 HOH HOH . C 3 HOH A 82 1682 19 HOH HOH . C 3 HOH A 83 1683 71 HOH HOH . C 3 HOH A 84 1684 122 HOH HOH . C 3 HOH A 85 1685 113 HOH HOH . C 3 HOH A 86 1686 194 HOH HOH . C 3 HOH A 87 1687 167 HOH HOH . C 3 HOH A 88 1688 138 HOH HOH . C 3 HOH A 89 1689 24 HOH HOH . C 3 HOH A 90 1690 44 HOH HOH . C 3 HOH A 91 1691 29 HOH HOH . C 3 HOH A 92 1692 40 HOH HOH . C 3 HOH A 93 1693 144 HOH HOH . C 3 HOH A 94 1694 91 HOH HOH . C 3 HOH A 95 1695 42 HOH HOH . C 3 HOH A 96 1696 75 HOH HOH . C 3 HOH A 97 1697 173 HOH HOH . C 3 HOH A 98 1698 127 HOH HOH . C 3 HOH A 99 1699 158 HOH HOH . C 3 HOH A 100 1700 15 HOH HOH . C 3 HOH A 101 1701 82 HOH HOH . C 3 HOH A 102 1702 134 HOH HOH . C 3 HOH A 103 1703 129 HOH HOH . C 3 HOH A 104 1704 67 HOH HOH . C 3 HOH A 105 1705 116 HOH HOH . C 3 HOH A 106 1706 120 HOH HOH . C 3 HOH A 107 1707 90 HOH HOH . C 3 HOH A 108 1708 37 HOH HOH . C 3 HOH A 109 1709 23 HOH HOH . C 3 HOH A 110 1710 69 HOH HOH . C 3 HOH A 111 1711 178 HOH HOH . C 3 HOH A 112 1712 80 HOH HOH . C 3 HOH A 113 1713 7 HOH HOH . C 3 HOH A 114 1714 32 HOH HOH . C 3 HOH A 115 1715 58 HOH HOH . C 3 HOH A 116 1716 43 HOH HOH . C 3 HOH A 117 1717 49 HOH HOH . C 3 HOH A 118 1718 26 HOH HOH . C 3 HOH A 119 1719 155 HOH HOH . C 3 HOH A 120 1720 88 HOH HOH . C 3 HOH A 121 1721 204 HOH HOH . C 3 HOH A 122 1722 3 HOH HOH . C 3 HOH A 123 1723 142 HOH HOH . C 3 HOH A 124 1724 125 HOH HOH . C 3 HOH A 125 1725 20 HOH HOH . C 3 HOH A 126 1726 53 HOH HOH . C 3 HOH A 127 1727 38 HOH HOH . C 3 HOH A 128 1728 18 HOH HOH . C 3 HOH A 129 1729 2 HOH HOH . C 3 HOH A 130 1730 152 HOH HOH . C 3 HOH A 131 1731 22 HOH HOH . C 3 HOH A 132 1732 72 HOH HOH . C 3 HOH A 133 1733 81 HOH HOH . C 3 HOH A 134 1734 96 HOH HOH . C 3 HOH A 135 1735 132 HOH HOH . C 3 HOH A 136 1736 34 HOH HOH . C 3 HOH A 137 1737 137 HOH HOH . C 3 HOH A 138 1738 57 HOH HOH . C 3 HOH A 139 1739 175 HOH HOH . C 3 HOH A 140 1740 165 HOH HOH . C 3 HOH A 141 1741 161 HOH HOH . C 3 HOH A 142 1742 95 HOH HOH . C 3 HOH A 143 1743 126 HOH HOH . C 3 HOH A 144 1744 180 HOH HOH . C 3 HOH A 145 1745 117 HOH HOH . C 3 HOH A 146 1746 181 HOH HOH . C 3 HOH A 147 1747 109 HOH HOH . C 3 HOH A 148 1748 133 HOH HOH . C 3 HOH A 149 1749 123 HOH HOH . C 3 HOH A 150 1750 1 HOH HOH . C 3 HOH A 151 1751 118 HOH HOH . C 3 HOH A 152 1752 5 HOH HOH . C 3 HOH A 153 1753 13 HOH HOH . C 3 HOH A 154 1754 205 HOH HOH . C 3 HOH A 155 1755 153 HOH HOH . C 3 HOH A 156 1756 166 HOH HOH . C 3 HOH A 157 1757 177 HOH HOH . C 3 HOH A 158 1758 6 HOH HOH . C 3 HOH A 159 1759 150 HOH HOH . C 3 HOH A 160 1760 149 HOH HOH . C 3 HOH A 161 1761 185 HOH HOH . C 3 HOH A 162 1762 11 HOH HOH . C 3 HOH A 163 1763 8 HOH HOH . C 3 HOH A 164 1764 164 HOH HOH . C 3 HOH A 165 1765 114 HOH HOH . C 3 HOH A 166 1766 115 HOH HOH . C 3 HOH A 167 1767 198 HOH HOH . C 3 HOH A 168 1768 199 HOH HOH . C 3 HOH A 169 1769 2 HOH HOH . C 3 HOH A 170 1770 112 HOH HOH . C 3 HOH A 171 1771 136 HOH HOH . C 3 HOH A 172 1772 209 HOH HOH . C 3 HOH A 173 1773 107 HOH HOH . C 3 HOH A 174 1774 16 HOH HOH . C 3 HOH A 175 1775 61 HOH HOH . C 3 HOH A 176 1776 186 HOH HOH . C 3 HOH A 177 1777 15 HOH HOH . C 3 HOH A 178 1778 19 HOH HOH . C 3 HOH A 179 1779 190 HOH HOH . C 3 HOH A 180 1780 51 HOH HOH . C 3 HOH A 181 1781 41 HOH HOH . C 3 HOH A 182 1782 23 HOH HOH . C 3 HOH A 183 1783 9 HOH HOH . C 3 HOH A 184 1784 188 HOH HOH . C 3 HOH A 185 1785 210 HOH HOH . C 3 HOH A 186 1786 30 HOH HOH . C 3 HOH A 187 1787 201 HOH HOH . C 3 HOH A 188 1788 13 HOH HOH . C 3 HOH A 189 1789 14 HOH HOH . C 3 HOH A 190 1790 193 HOH HOH . C 3 HOH A 191 1791 168 HOH HOH . C 3 HOH A 192 1792 195 HOH HOH . C 3 HOH A 193 1793 170 HOH HOH . C 3 HOH A 194 1794 68 HOH HOH . C 3 HOH A 195 1795 46 HOH HOH . C 3 HOH A 196 1796 110 HOH HOH . C 3 HOH A 197 1797 17 HOH HOH . C 3 HOH A 198 1798 104 HOH HOH . C 3 HOH A 199 1799 99 HOH HOH . C 3 HOH A 200 1800 102 HOH HOH . C 3 HOH A 201 1801 18 HOH HOH . C 3 HOH A 202 1802 103 HOH HOH . C 3 HOH A 203 1803 73 HOH HOH . C 3 HOH A 204 1804 78 HOH HOH . C 3 HOH A 205 1805 8 HOH HOH . C 3 HOH A 206 1806 100 HOH HOH . C 3 HOH A 207 1807 196 HOH HOH . C 3 HOH A 208 1808 111 HOH HOH . C 3 HOH A 209 1809 200 HOH HOH . C 3 HOH A 210 1810 206 HOH HOH . C 3 HOH A 211 1811 189 HOH HOH . C 3 HOH A 212 1812 87 HOH HOH . C 3 HOH A 213 1813 192 HOH HOH . C 3 HOH A 214 1814 21 HOH HOH . C 3 HOH A 215 1815 97 HOH HOH . C 3 HOH A 216 1816 203 HOH HOH . C 3 HOH A 217 1817 79 HOH HOH . C 3 HOH A 218 1818 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UWD . . . B 2 -20.193 11.877 24.951 0.61 14.73 ? N1 UWD 1501 A 1 HETATM 2 N N3 UWD . . . B 2 -21.232 12.884 26.629 0.61 14.28 ? N3 UWD 1501 A 1 HETATM 3 C C4 UWD . . . B 2 -23.56 12.199 26.237 0.61 15.2 ? C4 UWD 1501 A 1 HETATM 4 C C5 UWD . . . B 2 -23.905 12.881 27.351 0.61 15.79 ? C5 UWD 1501 A 1 HETATM 5 C C6 UWD . . . B 2 -22.923 13.585 28.113 0.61 15.76 ? C6 UWD 1501 A 1 HETATM 6 C C7 UWD . . . B 2 -21.601 13.587 27.754 0.61 14.87 ? C7 UWD 1501 A 1 HETATM 7 N N UWD . . . B 2 -18.572 14.602 25.893 0.61 18.07 ? N UWD 1501 A 1 HETATM 8 C C UWD . . . B 2 -18.341 14.564 24.437 0.61 18.58 ? C UWD 1501 A 1 HETATM 9 C C1 UWD . . . B 2 -18.704 13.247 26.509 0.61 17.03 ? C1 UWD 1501 A 1 HETATM 10 C C2 UWD . . . B 2 -20 12.681 26.041 0.61 15.36 ? C2 UWD 1501 A 1 HETATM 11 C C3 UWD . . . B 2 -22.192 12.182 25.848 0.61 14.45 ? C3 UWD 1501 A 1 HETATM 12 N N2 UWD . . . B 2 -21.544 11.567 24.817 0.61 14.09 ? N2 UWD 1501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #