data_5RKE # _model_server_result.job_id W16QkTlqIQ5DU3gWffGz9Q _model_server_result.datetime_utc '2024-11-13 14:06:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5rke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 5RKE # _exptl.entry_id 5RKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.637 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloro-2-(propan-2-yl)pyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.4 _cell.angle_gamma 90 _cell.entry_id 5RKE _cell.length_a 81.647 _cell.length_b 26.998 _cell.length_c 55.916 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5RKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H10 Cl N3 O' _chem_comp.formula_weight 199.637 _chem_comp.id K2G _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloro-2-(propan-2-yl)pyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 K2G sing 173 n n C1 C2 K2G sing 174 n n C1 C3 K2G sing 175 n n N C3 K2G doub 176 n y N C4 K2G sing 177 n y C3 N1 K2G sing 178 n y C4 C5 K2G doub 179 n y N1 C6 K2G doub 180 n y C5 C6 K2G sing 181 n y C5 CL K2G sing 182 n n C6 C7 K2G sing 183 n n N2 C7 K2G sing 184 n n C7 O K2G doub 185 n n C4 H1 K2G sing 186 n n C H2 K2G sing 187 n n C H3 K2G sing 188 n n C H4 K2G sing 189 n n C1 H5 K2G sing 190 n n C2 H6 K2G sing 191 n n C2 H7 K2G sing 192 n n C2 H8 K2G sing 193 n n N2 H9 K2G sing 194 n n N2 H10 K2G sing 195 n n # _atom_sites.entry_id 5RKE _atom_sites.fract_transf_matrix[1][1] 0.012248 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002248 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K2G A 1 1501 1501 K2G LIG . C 3 HOH A 1 1601 195 HOH HOH . C 3 HOH A 2 1602 140 HOH HOH . C 3 HOH A 3 1603 183 HOH HOH . C 3 HOH A 4 1604 89 HOH HOH . C 3 HOH A 5 1605 7 HOH HOH . C 3 HOH A 6 1606 197 HOH HOH . C 3 HOH A 7 1607 121 HOH HOH . C 3 HOH A 8 1608 85 HOH HOH . C 3 HOH A 9 1609 144 HOH HOH . C 3 HOH A 10 1610 151 HOH HOH . C 3 HOH A 11 1611 10 HOH HOH . C 3 HOH A 12 1612 17 HOH HOH . C 3 HOH A 13 1613 1 HOH HOH . C 3 HOH A 14 1614 184 HOH HOH . C 3 HOH A 15 1615 33 HOH HOH . C 3 HOH A 16 1616 9 HOH HOH . C 3 HOH A 17 1617 41 HOH HOH . C 3 HOH A 18 1618 187 HOH HOH . C 3 HOH A 19 1619 141 HOH HOH . C 3 HOH A 20 1620 84 HOH HOH . C 3 HOH A 21 1621 83 HOH HOH . C 3 HOH A 22 1622 74 HOH HOH . C 3 HOH A 23 1623 98 HOH HOH . C 3 HOH A 24 1624 124 HOH HOH . C 3 HOH A 25 1625 25 HOH HOH . C 3 HOH A 26 1626 20 HOH HOH . C 3 HOH A 27 1627 75 HOH HOH . C 3 HOH A 28 1628 171 HOH HOH . C 3 HOH A 29 1629 65 HOH HOH . C 3 HOH A 30 1630 50 HOH HOH . C 3 HOH A 31 1631 9 HOH HOH . C 3 HOH A 32 1632 12 HOH HOH . C 3 HOH A 33 1633 31 HOH HOH . C 3 HOH A 34 1634 146 HOH HOH . C 3 HOH A 35 1635 160 HOH HOH . C 3 HOH A 36 1636 55 HOH HOH . C 3 HOH A 37 1637 26 HOH HOH . C 3 HOH A 38 1638 101 HOH HOH . C 3 HOH A 39 1639 16 HOH HOH . C 3 HOH A 40 1640 36 HOH HOH . C 3 HOH A 41 1641 39 HOH HOH . C 3 HOH A 42 1642 154 HOH HOH . C 3 HOH A 43 1643 139 HOH HOH . C 3 HOH A 44 1644 14 HOH HOH . C 3 HOH A 45 1645 3 HOH HOH . C 3 HOH A 46 1646 45 HOH HOH . C 3 HOH A 47 1647 4 HOH HOH . C 3 HOH A 48 1648 35 HOH HOH . C 3 HOH A 49 1649 182 HOH HOH . C 3 HOH A 50 1650 94 HOH HOH . C 3 HOH A 51 1651 1 HOH HOH . C 3 HOH A 52 1652 60 HOH HOH . C 3 HOH A 53 1653 108 HOH HOH . C 3 HOH A 54 1654 62 HOH HOH . C 3 HOH A 55 1655 52 HOH HOH . C 3 HOH A 56 1656 5 HOH HOH . C 3 HOH A 57 1657 28 HOH HOH . C 3 HOH A 58 1658 64 HOH HOH . C 3 HOH A 59 1659 138 HOH HOH . C 3 HOH A 60 1660 59 HOH HOH . C 3 HOH A 61 1661 54 HOH HOH . C 3 HOH A 62 1662 92 HOH HOH . C 3 HOH A 63 1663 2 HOH HOH . C 3 HOH A 64 1664 128 HOH HOH . C 3 HOH A 65 1665 77 HOH HOH . C 3 HOH A 66 1666 157 HOH HOH . C 3 HOH A 67 1667 82 HOH HOH . C 3 HOH A 68 1668 6 HOH HOH . C 3 HOH A 69 1669 66 HOH HOH . C 3 HOH A 70 1670 145 HOH HOH . C 3 HOH A 71 1671 106 HOH HOH . C 3 HOH A 72 1672 180 HOH HOH . C 3 HOH A 73 1673 21 HOH HOH . C 3 HOH A 74 1674 113 HOH HOH . C 3 HOH A 75 1675 137 HOH HOH . C 3 HOH A 76 1676 56 HOH HOH . C 3 HOH A 77 1677 29 HOH HOH . C 3 HOH A 78 1678 32 HOH HOH . C 3 HOH A 79 1679 70 HOH HOH . C 3 HOH A 80 1680 167 HOH HOH . C 3 HOH A 81 1681 69 HOH HOH . C 3 HOH A 82 1682 11 HOH HOH . C 3 HOH A 83 1683 63 HOH HOH . C 3 HOH A 84 1684 48 HOH HOH . C 3 HOH A 85 1685 71 HOH HOH . C 3 HOH A 86 1686 129 HOH HOH . C 3 HOH A 87 1687 19 HOH HOH . C 3 HOH A 88 1688 130 HOH HOH . C 3 HOH A 89 1689 40 HOH HOH . C 3 HOH A 90 1690 27 HOH HOH . C 3 HOH A 91 1691 152 HOH HOH . C 3 HOH A 92 1692 76 HOH HOH . C 3 HOH A 93 1693 176 HOH HOH . C 3 HOH A 94 1694 15 HOH HOH . C 3 HOH A 95 1695 44 HOH HOH . C 3 HOH A 96 1696 136 HOH HOH . C 3 HOH A 97 1697 90 HOH HOH . C 3 HOH A 98 1698 23 HOH HOH . C 3 HOH A 99 1699 119 HOH HOH . C 3 HOH A 100 1700 116 HOH HOH . C 3 HOH A 101 1701 43 HOH HOH . C 3 HOH A 102 1702 91 HOH HOH . C 3 HOH A 103 1703 178 HOH HOH . C 3 HOH A 104 1704 2 HOH HOH . C 3 HOH A 105 1705 127 HOH HOH . C 3 HOH A 106 1706 42 HOH HOH . C 3 HOH A 107 1707 131 HOH HOH . C 3 HOH A 108 1708 96 HOH HOH . C 3 HOH A 109 1709 37 HOH HOH . C 3 HOH A 110 1710 6 HOH HOH . C 3 HOH A 111 1711 88 HOH HOH . C 3 HOH A 112 1712 38 HOH HOH . C 3 HOH A 113 1713 132 HOH HOH . C 3 HOH A 114 1714 67 HOH HOH . C 3 HOH A 115 1715 134 HOH HOH . C 3 HOH A 116 1716 49 HOH HOH . C 3 HOH A 117 1717 105 HOH HOH . C 3 HOH A 118 1718 95 HOH HOH . C 3 HOH A 119 1719 81 HOH HOH . C 3 HOH A 120 1720 86 HOH HOH . C 3 HOH A 121 1721 24 HOH HOH . C 3 HOH A 122 1722 18 HOH HOH . C 3 HOH A 123 1723 125 HOH HOH . C 3 HOH A 124 1724 80 HOH HOH . C 3 HOH A 125 1725 109 HOH HOH . C 3 HOH A 126 1726 150 HOH HOH . C 3 HOH A 127 1727 122 HOH HOH . C 3 HOH A 128 1728 175 HOH HOH . C 3 HOH A 129 1729 72 HOH HOH . C 3 HOH A 130 1730 165 HOH HOH . C 3 HOH A 131 1731 22 HOH HOH . C 3 HOH A 132 1732 57 HOH HOH . C 3 HOH A 133 1733 120 HOH HOH . C 3 HOH A 134 1734 174 HOH HOH . C 3 HOH A 135 1735 58 HOH HOH . C 3 HOH A 136 1736 34 HOH HOH . C 3 HOH A 137 1737 53 HOH HOH . C 3 HOH A 138 1738 166 HOH HOH . C 3 HOH A 139 1739 123 HOH HOH . C 3 HOH A 140 1740 13 HOH HOH . C 3 HOH A 141 1741 181 HOH HOH . C 3 HOH A 142 1742 117 HOH HOH . C 3 HOH A 143 1743 118 HOH HOH . C 3 HOH A 144 1744 172 HOH HOH . C 3 HOH A 145 1745 158 HOH HOH . C 3 HOH A 146 1746 47 HOH HOH . C 3 HOH A 147 1747 126 HOH HOH . C 3 HOH A 148 1748 153 HOH HOH . C 3 HOH A 149 1749 133 HOH HOH . C 3 HOH A 150 1750 199 HOH HOH . C 3 HOH A 151 1751 8 HOH HOH . C 3 HOH A 152 1752 104 HOH HOH . C 3 HOH A 153 1753 202 HOH HOH . C 3 HOH A 154 1754 115 HOH HOH . C 3 HOH A 155 1755 30 HOH HOH . C 3 HOH A 156 1756 164 HOH HOH . C 3 HOH A 157 1757 8 HOH HOH . C 3 HOH A 158 1758 114 HOH HOH . C 3 HOH A 159 1759 185 HOH HOH . C 3 HOH A 160 1760 5 HOH HOH . C 3 HOH A 161 1761 107 HOH HOH . C 3 HOH A 162 1762 198 HOH HOH . C 3 HOH A 163 1763 61 HOH HOH . C 3 HOH A 164 1764 156 HOH HOH . C 3 HOH A 165 1765 112 HOH HOH . C 3 HOH A 166 1766 170 HOH HOH . C 3 HOH A 167 1767 186 HOH HOH . C 3 HOH A 168 1768 188 HOH HOH . C 3 HOH A 169 1769 51 HOH HOH . C 3 HOH A 170 1770 190 HOH HOH . C 3 HOH A 171 1771 93 HOH HOH . C 3 HOH A 172 1772 168 HOH HOH . C 3 HOH A 173 1773 78 HOH HOH . C 3 HOH A 174 1774 193 HOH HOH . C 3 HOH A 175 1775 110 HOH HOH . C 3 HOH A 176 1776 103 HOH HOH . C 3 HOH A 177 1777 68 HOH HOH . C 3 HOH A 178 1778 46 HOH HOH . C 3 HOH A 179 1779 102 HOH HOH . C 3 HOH A 180 1780 73 HOH HOH . C 3 HOH A 181 1781 3 HOH HOH . C 3 HOH A 182 1782 201 HOH HOH . C 3 HOH A 183 1783 196 HOH HOH . C 3 HOH A 184 1784 200 HOH HOH . C 3 HOH A 185 1785 4 HOH HOH . C 3 HOH A 186 1786 189 HOH HOH . C 3 HOH A 187 1787 111 HOH HOH . C 3 HOH A 188 1788 97 HOH HOH . C 3 HOH A 189 1789 148 HOH HOH . C 3 HOH A 190 1790 192 HOH HOH . C 3 HOH A 191 1791 87 HOH HOH . C 3 HOH A 192 1792 7 HOH HOH . C 3 HOH A 193 1793 203 HOH HOH . C 3 HOH A 194 1794 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 K2G . . . B 2 -20.95 13.193 27.073 0.48 15.58 ? N1 K2G 1501 A 1 HETATM 2 C C4 K2G . . . B 2 -21.794 11.415 25.074 0.48 13 ? C4 K2G 1501 A 1 HETATM 3 C C5 K2G . . . B 2 -22.758 12.019 25.951 0.48 13.46 ? C5 K2G 1501 A 1 HETATM 4 C C6 K2G . . . B 2 -22.276 12.866 26.971 0.48 15.02 ? C6 K2G 1501 A 1 HETATM 5 C C7 K2G . . . B 2 -23.2 13.458 28.041 0.48 15.27 ? C7 K2G 1501 A 1 HETATM 6 N N K2G . . . B 2 -20.451 11.746 25.189 0.48 14.42 ? N K2G 1501 A 1 HETATM 7 C C K2G . . . B 2 -18.229 13.975 27.285 0.48 17.16 ? C K2G 1501 A 1 HETATM 8 O O K2G . . . B 2 -24.411 13.242 28.117 0.48 13.98 ? O K2G 1501 A 1 HETATM 9 C C1 K2G . . . B 2 -18.676 13.211 26.045 0.48 17 ? C1 K2G 1501 A 1 HETATM 10 C C2 K2G . . . B 2 -18.6 14.118 24.821 0.48 17.28 ? C2 K2G 1501 A 1 HETATM 11 C C3 K2G . . . B 2 -20.097 12.652 26.147 0.48 16.09 ? C3 K2G 1501 A 1 HETATM 12 N N2 K2G . . . B 2 -22.57 14.242 28.962 0.48 16.79 ? N2 K2G 1501 A 1 HETATM 13 CL CL K2G . . . B 2 -24.395 11.842 25.629 0.48 13.31 ? CL K2G 1501 A 1 # _model_server_stats.io_time_ms 102 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #